Publications of H. Redestig

Cuadros-Inostroza, A.; Caldana, C.; Redestig, H.; Kusano, M.; Lisec, J.; Pena-Cortes, H.; Willmitzer, L.; Hannah, M. A.: TargetSearch - a Bioconductor package for the efficient preprocessing of GC-MS metabolite profiling data. BMC Bioinformatics 10, p. 428 (2009)

Lisec, J.; Meyer, R. C.; Steinfath, M.; Redestig, H.; Becher, M.; Witucka-Wall, H.; Fiehn, O.; Torjek, O.; Selbig, J.; Altmann, T. et al.; Willmitzer, L.: Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations. Plant Journal 53 (6), pp. 960 - 972 (2008)

Sanchez, D. H.; Lippold, F.; Redestig, H.; Hannah, M. A.; Erban, A.; Kraemer, U.; Kopka, J.; Udvardi, M. K.: Integrative functional genomics of salt acclimatization in the model legume Lotus japonicus. Plant Journal 53 (6), pp. 973 - 987 (2008)

Sanchez, D. H.; Redestig, H.; Kraemer, U.; Udvardi, M. K.; Kopka, J.: Metabolome-ionome-biomass interactions: What can we learn about salt stress by multiparallel phenotyping? Plant Signaling & Behavior 3 (8), pp. 598 - 600 (2008)

Baxter, C. J.; Redestig, H.; Schauer, N.; Repsilber, D.; Patil, K. R.; Nielsen, J.; Selbig, J.; Liu, J. L.; Fernie, A. R.; Sweetlove, L. J.: The metabolic response of heterotrophic Arabidopsis cells to oxidative stress. Plant Physiology 143 (1), pp. 312 - 325 (2007)

Redestig, H.; Repsilber, D.; Sohler, F.; Selbig, J.: Integrating functional knowledge during sample clustering for microarray data using unsupervised decision trees. Biometrical Journal 49 (2), pp. 214 - 229 (2007)

Redestig, H.; Weicht, D.; Selbig, J.; Hannah, M. A.: Transcription factor target prediction using multiple short expression time series from Arabidopsis thaliana. BMC Bioinformatics 8, p. 454 (2007)

Stacklies, W.; Redestig, H.; Scholz, M.; Walther, D.; Selbig, J.: pcaMethods - a bioconductor package providing PCA methods for incomplete data. Bioinformatics 23 (9), pp. 1164 - 1167 (2007)

Redestig, H.; Szymanski, J.; Hirai, M. Y.; Selbig, J.; Willmitzer, L.; Saito, K.; Nikoloski, Z.: Data integration, Metabolic Networks and Systems Biology. In: Biology of Plant Metabolomics, 9 (Ed. Hall, R. D.). Wiley-Blackwell, Oxford, UK (2011)

Redestig, H.; Sohler, F.; Zimmer, R.; Selbig, J.: Unsupervised Decision Trees Structured by Gene Ontology (GO-UDTs) for the Interpretation of Microarray Data. In: Advances in Data Analysis, pp. 585 - 592 (Eds. Decker, R.; Lenz, H. -.). Springer-Verlag, Berlin, Heidelberg (2007)

Willmitzer, L.; Caldana, C.; Fernie, A. R.; Giavalisco, P.; MA, H.; Redestig, H.; Steinhauser, D.: Integrative Analysis of Transcriptome and Metabolome Data. In: Proceedings of the German Conference on Bioinformatics, Vol. 01. Proceedings of the German Conference on Bioinformatics, GCB 2007, Potsdam, Germany, September 26, 2007 - September 28, 2007. (2007)

Hannah, M. A.; Redestig, H.; Leisse, A.; Willmitzer, L.: Global mRNA changes in microarray experiments, Nature Biotechnology 26, pp. 741 - 742 (2008)

Usadel, B.; Nagel, A.; Steinhauser, D.; Gibon, Y.; Blaesing, O. E.; Redestig, H.; Sreenivasulu, N.; Krall, L.; Hannah, M. A.; Poree, F. et al.; Fernie, A. R.; Stitt, M.: PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments. BMC Bioinformatics 7, p. 535 (2006)

Usadel, B.; Nagel, A.; Thimm, O.; Redestig, H.; Bläsing, O. E.; Palacios-Rojas, N.; Selbig, J.; Hannemann, J.; Piques, M. C.; Steinhauser, D. et al.; Scheible, W.-R.; Gibon, Y.; Morcuende, R.; Weicht, D.; Meyer, S.; Stitt, M.: Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of coresponding genes, and comparison with known responses. Plant Physiology 138 (3), pp. 1195 - 1204 (2005)