Publications of J. Kopka

Lehr, P.; Erban, A.; Hartwig, R.; Wimmer, M.; Kopka, J.; Zörb, C.: Guard Cell-Specific Metabolic Responses to Drought Stress in Maize. Journal of Environmental Quality 211 (2), e70049 (2025)

Martinez-Seidel, F.; Suwanchaikasem, P.; Gentry-Torfer, D.; Rajarathinam, Y.; Ebert, A.; Erban, A.; Firmino, A.; Nie, S.; Leeming, M.; Williamson, N. et al.; Roessner, U.; Kopka, J.; Boughton, B. A.: Remodelled ribosomal populations synthesize a specific proteome in proliferating plant tissue during cold. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 380 (1921), 20230384 (2025)

Murillo, E.; Martinez-Seidel, F.; Atanasov, K. E.; Gentry-Torfer, D.; Firmino, A.; Augusto, A.; Erban, A.; Nie, S.; Leeming, M. G.; Suwanchaikasem, P. et al.; Boughton, B. A.; Williamson, N. A.; Roessner, U.; Kopka, J.; Alcázar , R.: Polyamines and flg22 reshape the ribosomal protein composition of actively translating ribosomes in plants. Plant Physiology and Biochemistry 220, 109585 (2025)

Rajarathinam, Y.; Wittemeier, L.; Gutekunst, K.; Hagemann, M.; Kopka, J.: Dynamic photosynthetic labeling and carbon-positional mass spectrometry monitor in vivo Rubisco carbon assimilation rates. Plant Physiology 197 (2), kiaf020 (2025)

Lehr, P.P.; Erban, A.; Hartwig, R.P.; Wimmer, M.A.; Kopka, J.; Zörb, C.: Grapevine and maize: Two guard cell shaped strategies to cope with repeated drought stress. Plant Physiology and Biochemistry 217, 109262 (2024)

Li, B.; Armarego-Marriott, T.; Kowalewska, Ł.; Thiele, W.; Erban, A.; Ruf, S.; Kopka, J.; Schöttler, M. A.; Bock, R.: Membrane protein provision controls prothylakoid biogenesis in tobacco etioplasts. The Plant Cell 36 (12), pp. 4862 - 4880 (2024)

Weiller, F.; Diniz, I.; Pimentel, D.; Erban, A.; Reis, P.; Soares, F.; Rego, C.; Kopka, J.; Fortes, A.M.: Metabolomic analysis of grapes and leaves from symptomatic and asymptomatic Vitis vinifera grapevines with Esca disease. Current Opinion in Plant Biology 40, 100378 (2024)

Ebert, A.; Alseekh, S.; D´Andrea, L.; Roessner, U.; Bock, R.; Kopka, J.: Detailed Profiling of 17-Hydroxygeranyllinalool Diterpene Glycosides from Nicotiana Species Reveals Complex Reaction Networks of Conjugation Isomers. Metabolites 14 (10), 562 (2024)

Woźniak, N.J.; Sartori, K.; Kappel, C.; Tran, T.C.; Zhao, L.; Erban, A.; Gallinger, J.; Fehrle, I.; Jantzen, F.; Orsucci, M. et al.; Ninkovic, V.; Rosa, S.; Lenhard, M.; Kopka, J.; Sicard, A.: Convergence and molecular evolution of floral fragrance after independent transitions to self-fertilization. Current Biology 34 (12), pp. 2702 - 2711.e6 (2024)

Gentry-Torfer, D.; Murillo, E.; Barrington, C. L.; Nie, S.; Leeming, M. G.; Suwanchaikasem, P.; Williamson, N. A.; Roessner, U.; Boughton, B. A.; Kopka, J. et al.; Martinez-Seidel, F.: Streamlining Protein Fractional Synthesis Rates Using SP3 Beads and Stable Isotope Mass Spectrometry: A Case Study on the Plant Ribosome. Bio-protocol 14 (9), e4981 (2024)

Rosa-Téllez, S.; Alcántara-Enguídanos, A.; Martinez-Seidel, F.; Casatejada-Anchel, R.; Saeheng, S.; Bailes, C. L.; Erban, A.; Medeiros, D.B.; Alepúz, P.; Matus, J. T. et al.; Kopka, J.; Muñoz-Bertomeu, J.; Krueger, S.; Roje, S.; Fernie, A. R.; Ros, R.: The serine-glycine-one carbon metabolic network orchestrates changes in nitrogen and sulfur metabolism and shapes plant development. The Plant Cell 36 (2), koad256, pp. 404 - 426 (2024)

Daubermann, A. G.; Lima, V. F.; Erban, A.; Kopka, J.; Fernie, A. R.; Schwarzländer, M.; dos Anjos, L.; Daloso, D. M.: Novel guard cell sink characteristics revealed by a multi-species/cell-types meta-analysis of 13C-labelling experiments. Theoretical and Experimental Plant Physiology (2024)

Schilling, F.; Schumacher, C.; Koehl, K. I.; Sprenger, H.; Kopka, J.; Peters, R.; Haas, M.; Zuther, E.; Horn, R.: Whole-genome sequencing of tetraploid potato varieties reveals different strategies for drought tolerance. Scientific Reports 14 (1), 5476 (2024)

Zuther, E.; Erban, A.; Kopka, J.; Pagter, M.: Different metabolic adaptation strategies after overwintering in Eutrema sp. and Arabidopsis accessions under field conditions in Germany. Physiologia Plantarum 176 (1), e14201 (2024)

Siodmak, A.; Martinez-Seidel, F.; Rayapuram, N.; Bazin, J.; Alhoraibi, H.; Gentry-Torfer, D.; Tabassum, N.; Sheikh, A. H.; Kise, J.; Blilou, I. et al.; Crespi, M.; Kopka, J.; Hirt, H.: Dynamics of ribosome composition and ribosomal protein phosphorylation in immune signaling in Arabidopsis thaliana. Nucleic Acids Research 51 (21), pp. 11876 - 11892 (2023)

Lima, V.F.; Freire, F.B.S.; Cândido-Sobrinho, S.A.; Porto, N.P.; Medeiros, D.B.; Erban, A.; Kopka, J.; Schwarzländer, M.; Fernie, A. R.; Daloso, D.M.: Unveiling the dark side of guard cell metabolism. Plant Physiology and Biochemistry 201, 107862 (2023)

Soltani, F.; Nouri, M.; Shokrpour, M.; Alabboud, M.; Erban, A.; Fehrle, I.; Kopka, J.: Breeding of Persian melon: Purpose to increase volatile compounds in melon (Cucumis melo) intergroup F1 cross population. Plant Breeding 142 (3), pp. 372 - 387 (2023)

Soares, F.; Pimentel, D.; Erban, A.; Neves, C.; Reis, P.; Pereira, M.; Rego, C.; Gama-Carvalho, M.; Kopka, J.; Fortes, A. M.: Virulence-related metabolism is activated in Botrytis cinerea mostly in the interaction with tolerant green grapes that remain largely unaffected in contrast with susceptible green grapes. Horticulture Research 9, uhac217 (2022)

Brigante, F. I.; Lucini Mas, A.; Erban, A.; Fehrle, I.; Martinez-Seidel, F.; Kopka, J.; Wunderlin, D. A.; Baroni, M. V.: Authenticity assessment of commercial bakery products with chia, flax and sesame seeds: Application of targeted and untargeted metabolomics results from seeds and lab-scale cookies. Food control 140, 109114 (2022)

Vyse, K.; Fischer, A.; Zajancauskaite, G.; Erban, A.; Kopka, J.; Balazadeh, S.; Zuther, E.: Co-expression networks of deacclimation-impaired transcription factor mutants identified complex regulation of the cold stress release response. Physiologia Plantarum 174 (4), e13746 (2022)