Publications of Z. Nikoloski

Journal Article (174)

61.
Journal Article
Breuer, D.; Nowak, J.; Ivako, A.; Somssich, M.; Persson, S.; Nikoloski, Z.: System-wide organization of actin cytoskeleton determines organelle transport in hypocotyl plant cells. Proceedings of the National Academy of Sciences of the United States of America 114 (28), pp. E5741 - E5749 (2017)
62.
Journal Article
de Abreu e Lima, F.; Westhues, M.; Cuadros-Inostroza, Á.; Willmitzer, L.; Melchinger, A. E.; Nikoloski, Z.: Metabolic robustness in young roots underpins a predictive model of maize hybrid performance in the field. The Plant Journal 90 (2), pp. 319 - 329 (2017)
63.
Journal Article
Estevez, S.; Nikoloski, Z.: On the effects of alternative optima in context-specific metabolic model predictions. PLoS Computational Biology 13 (5), e1005568 (2017)
64.
Journal Article
Gago, J.; Fernie, A. R.; Nikoloski, Z.; Tohge, T.; Martorell, S.; Mariano Escalona, J.; Ribas-Carbo, M.; Flexas, J.; Medrano, H.: Integrative field scale phenotyping for investigating metabolic components of water stress within a vineyard. Plant Methods 13, 90 (2017)
65.
Journal Article
Robaina-Estévez, S.; Daloso, D. M.; Zhang, Y.; Fernie, A. R.; Nikoloski, Z.: Resolving the central metabolism of Arabidopsis guard cells. Scientific Reports 7, 8307 (2017)
66.
Journal Article
Ruprecht, C.; Lohaus, R.; Vanneste, K.; Mutwil, M.; Nikoloski, Z.; Van de Peer, Y.; Persson, S.: Revisiting ancestral polyploidy in plants. Science Advances 3 (7), e1603195 (2017)
67.
Journal Article
Schwahn, K.; Beleggia, R.; Omranian, N.; Nikoloski, Z.: Stoichiometric Correlation Analysis: Principles of Metabolic Functionality from Metabolomics Data. Frontiers in Plant Science 8, 2152 (2017)
68.
Journal Article
Swiadek, M.; Proost, S.; Sieh, D.; Yu, J.; Todesco, M.; Jorzig, C.; Cubillos, A.; Plötner, B.; Nikoloski, Z.; Chae, E. et al.; Giavalisco, P.; Fischer, A.; Schröder, F.; Kim, S.-T.; Weigel, D.; Laitinen, R.: Novel allelic variants in ACD6 cause hybrid necrosis in local collection of Arabidopsis thaliana. New Phytologist 213 (2), pp. 900 - 915 (2017)
69.
Journal Article
Westhues, M.; Schrag, T. A.; Heuer, C.; Thaller, G.; Utz, H. F.; Schipprack, W.; Thiemann, A.; Seifert, F.; Ehret, A.; Schlereth, A. et al.; Stitt, M.; Nikoloski, Z.; Willmitzer, L.; Schoen, C. C.; Scholten, S.; Melchinger, A. E.: Omics-based hybrid prediction in maize. Theoretical and Applied Genetics 130 (9), pp. 1927 - 1939 (2017)
70.
Journal Article
Zhang, Y.; Beard, K. F. M.; Swart, C.; Bergmann, S.; Krahnert, I.; Nikoloski, Z.; Graf, A.; Ratcliffe, R. G.; Sweetlove, L. J.; Fernie, A. R. et al.; Obata, T.: Protein-protein interactions and metabolite channelling in the plant tricarboxylic acid cycle. Nature Communications 8, 15212 (2017)
71.
Journal Article
Gago, J.; Daloso, D. M.; Figueroa, C. M.; Flexas, J.; Fernie, A. R.; Nikoloski, Z.: Relationships of Leaf Net Photosynthesis, Stomatal Conductance, and Mesophyll Conductance to Primary Metabolism: A Multispecies Meta-Analysis Approach. Plant Physiology 171 (1), pp. 265 - 279 (2016)
72.
Journal Article
Omranian, N.; Eloundou-Mbebi, J. M. O.; Mueller-Roeber, B.; Nikoloski, Z.: Gene regulatory network inference using fused LASSO on multiple data sets. Scientific Reports 6, 20533 (2016)
73.
Journal Article
Basler, G.; Küken, A.; Fernie, A. R.; Nikoloski, Z.: Photorespiratory Bypasses Lead to Increased Growth in Arabidopsis thaliana: Are Predictions Consistent with Experimental Evidence? Frontiers in Bioengineering and Biotechnology 4, 31 (2016)
74.
Journal Article
Basler, G.; Nikoloski, Z.; Larhlimi, A.; Barabasi, A.-L.; Liu, Y.-Y.: Control of fluxes in metabolic networks. Genome Research 26 (7), pp. 956 - 968 (2016)
75.
Journal Article
Beleggia, R.; Rau, D.; Laido, G.; Platani, C.; Nigro, F.; Fragasso, M.; De Vita, P.; Scossa, F.; Fernie, A. R.; Nikoloski, Z. et al.; Papa, R.: Evolutionary Metabolomics Reveals Domestication-Associated Changes in Tetraploid Wheat Kernels. Molecular Biology and Evolution 33 (7), pp. 1740 - 1753 (2016)
76.
Journal Article
Eloundou-Mbebi, J. M. O.; Küken, A.; Omranian, N.; Kleessen, S.; Neigenfind, J.; Basler, G.; Nikoloski, Z.: A network property necessary for concentration robustness. Nature Communications 7, 13255 (2016)
77.
Journal Article
Estevez, S.; Nikoloski, Z.: Metabolic Network Constrains Gene Regulation of C4 Photosynthesis: The Case of Maize. Plant & Cell Physiology 57 (5), pp. 933 - 943 (2016)
78.
Journal Article
Florez-Sarasa, I. D.; Ribas-Carbo, M.; Fernandez Del-Saz, N.; Schwahn, K.; Nikoloski, Z.; Fernie, A. R.; Flexas, J.: Unravelling the invivo regulation and metabolic role of the alternative oxidase pathway in C-3 species under photoinhibitory conditions. New Phytologist 212 (1), pp. 66 - 79 (2016)
79.
Journal Article
Liu, Z.; Omranian, N.; Neumetzler, L.; Wang, T.; Herter, T.; Usadel, B.; Demura, T.; Giavalisco, P.; Nikoloski, Z.; Persson, S.: A transcriptional and metabolic framework for secondary wall formation in arabidopsis. Plant Physiology 172 (2), pp. 1334 - 1351 (2016)
80.
Journal Article
Orf, I.; Timm, S.; Bauwe, H.; Fernie, A. R.; Hagemann, M.; Kopka, J.; Nikoloski, Z.: Can cyanobacteria serve as a model of plant photorespiration? - a comparative meta-analysis of metabolite profiles. Journal of Experimental Botany 67 (10), pp. 2941 - 2952 (2016)
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