Publications of Z. Nikoloski

van Dongen, J. T.; Nikoloski, Z.: Modeling alternatives for interpreting the change in oxygen-consumption rates during hypoxic conditions, New Phytologist 190, pp. 273 - 276 (2011)

Dellero, Y.; Nikoloski, Z.: Editorial: Isotopic Labeling Approaches for Exploring Plant Metabolism Dynamics. Frontiers in Plant Science 14, 1356153 (2023)

Hanson, A.D.; Millar, A.H.; Nikoloski, Z.; Way, D.A.: Focus on respiration. Plant Physiology 191 (4), pp. 2067 - 2069 (2023)

Arend, M.; Paulitz, E.; Hsieh, Y.; Nikoloski, Z.: Scaling metabolic model reconstruction up to the pan-genome level: A systematic review and prospective applications to photosynthetic organisms. Metabolic Engineering 90, pp. 67 - 77 (2025)

Marzban, N.; Psarianos, M.; Herrmann, C.; Schulz-Nielsen, L.; Olszewska-Widdrat, A.; Arefi, A.; Pecenka, R.; Grundmann, P.; Schlüter, O. K.; Hoffmann, T. et al.; Rotter, V. S.; Nikoloski, Z.; Sturm, B.: Smart integrated biorefineries in bioeconomy: A concept toward zero-waste, emission reduction, and self-sufficient energy production. Biofuel Research Journal 12 (1), pp. 2319 - 2349 (2025)

Ferreira, M.A.D.M.; Silveira, W.B.D.; Nikoloski, Z.: Protein constraints in genome-scale metabolic models: Data integration, parameter estimation, and prediction of metabolic phenotypes. Biotechnology and Bioengineering 121 (3), pp. 915 - 930 (2024)

Wendering, P.; Nikoloski, Z.: Model-driven insights into the effects of temperature on metabolism. Biotechnology Advances 67, 108203 (2023)

Huß, S.; Nikoloski, Z.: Systematic comparison of local approaches for isotopically nonstationary metabolic flux analysis. Frontiers in Plant Science 14, 1178239 (2023)

Østerlund, I.; Persson, S.; Nikoloski, Z.: Tracing and tracking filamentous structures across scales: A systematic review. Computational and Structural Biotechnology Journal 21, pp. 452 - 462 (2023)

Omranian, S.; Nikoloski, Z.; Grimm, D.: Computational identification of protein complexes from network interactions: Present state, challenges, and the way forward. Computational and Structural Biotechnology Journal 20, pp. 2699 - 2712 (2022)

Tong, H.; Küken, A.; Razaghi-Moghadam, Z.; Nikoloski, Z.: Characterization of effects of genetic variants via genome-scale metabolic modelling. Cellular and Molecular Life Sciences 78, pp. 5123 - 5138 (2021)

Medeiros, D. B.; Daloso, D. M.; Fernie, A. R.; Nikoloski, Z.; Araujo, W. L.: Utilizing systems biology to unravel stomatal function and the hierarchies underpinning its control. Plant, Cell and Environment 38 (8), pp. 1457 - 1470 (2015)

Toepfer, N.; Kleessen, S.; Nikoloski, Z.: Integration of metabolomics data into metabolic networks. Frontiers in Plant Science 6, 49 (2015)

Estevez, S.; Nikoloski, Z.: Generalized framework for context-specific metabolic model extraction methods. Frontiers in Plant Science 5, p. 491 - 491 (2014)

Arnold, A.; Nikoloski, Z.: Comprehensive classification and perspective for modelling photorespiratory metabolism. Plant Biology 15 (4), pp. 667 - 675 (2013)

Fernie, A. R.; Bauwe, H.; Eisenhut, M.; Florian, A.; Hanson, D. T.; Hagemann, M.; Keech, O.; Mielewczik, M.; Nikoloski, Z.; Peterhansel, C. et al.; Roje, S.; Sage, R.; Timm, S.; von Cammerer, S.; Weber, A. P.; Westhoff, P.: Perspectives on plant photorespiratory metabolism. Plant Biology 15 (4), pp. 748 - 753 (2013)

Toubiana, D.; Fernie, A. R.; Nikoloski, Z.; Fait, A.: Network analysis: tackling complex data to study plant metabolism. Trends in Biotechnology 31 (1), pp. 29 - 36 (2013)

Klie, S.; Mutwil, M.; Persson, S.; Nikoloski, Z.: Inferring gene functions through dissection of relevance networks: interleaving the intra- and inter-species views. Molecular BioSystems 8 (9), pp. 2233 - 2241 (2012)

Larhlimi, A.; Blachon, S.; Selbig, J.; Nikoloski, Z.: Robustness of metabolic networks: A review of existing definitions. Biosystems 106 (1), pp. 1 - 8 (2011)

Arnold, A.; Nikoloski, Z.: A quantitative comparison of CalvinBenson cycle models. Trends in Plant Science 16 (12), pp. 676 - 683 (2011)