Publications of the Group

Salem, M.; El-Shiekh, R.; Aborehab, N.; Al-Karmalawy, A.; Ezzat, S.; Alseekh, S.; Fernie, A. R.: Metabolomics driven analysis of Nigella sativa seeds identifies the impact of roasting on the chemical composition and immunomodulatory activity. Food Chemistry 398, 133906 (2023)

Apriyanto, A.; Compart, J.; Zimmermann, V.; Alseekh, S.; Fernie, A. R.; Fettke, J.: Indication that starch and sucrose are biomarkers for oil yield in oil palm (Elaeis guineensis Jacq.). FOOD CHEMISTRY 393, 133361 (2022)

Balparda, M.; Schmitz, J.; Duemmel, M.; Wuthenow, I. C.; Schmidt, M.; Alseekh, S.; Fernie, A. R.; Lercher, M. J.; Maurino, V. G.: Two plant glyoxalase systems with different evolutionary origins detoxify diverse reactive carbonyl species. Plant Physiology, kiac526 (2022)

Mehring, A.; Zayed, A.; Salem, M.A.; Alseekh, S.; Fernie, A.; Ulber, R.: Time-dependent behaviour of methyl jasmonate elicited cell suspension cultures of Ocimum species via untargeted mass spectrometry-based metabolomics. Industrial Crops and Products 187 (Part A), 115414 (2022)

Sayed, S.M.A.; Alseekh, S.; Siems, K.; Fernie, A. R.; Luyten, W.; Schmitz-Linneweber, C.; Saul, N.: Identification of a Hydroxygallic Acid Derivative, Zingibroside R1 and a Sterol Lipid as Potential Active Ingredients of Cuscuta chinensis Extract That Has Neuroprotective and Antioxidant Effects in Aged Caenorhabditis elegans. Nutrients 14 (19), 4199 (2022)

Ahouvi, Y.; Haber, Z.; Zach, Y. Y.; Rosental, L.; Toubiana, D.; Sharma, D.; Alseekh, S.; Tajima, H.; Fernie, A. R.; Brotman, Y. et al.; Blumwald, E.; Sade, N.: The Alteration Of Tomato CHLOROPLAST VESICULATION Positively Affects Whole-Plant Source–Sink Relations And Fruit Metabolism Under Stress Conditions. Plant and Cell Physiology (2022)

Sun, Y.; Alseekh, S.; Fernie, A. R.: Plant secondary metabolic responses to global climate change: A meta-analysis in medicinal and aromatic plants. GCB Bioenergy (2022)

Zhu, F.; Jadhav, S. S.; Tohge, T.; Salem, M. A.; Li, J. M.; Giovannoni, J. J.; Cheng, Y.; Alseekh, S.; Fernie, A. R.: A comparative transcriptomics and eQTL approach identifies SlWD40 as a tomato fruit ripening regulator. Plant Physiology 190 (1), pp. 250 - 266 (2022)

Zhang, J.; Chi, X.; Zhong, J.; Fernie, A. R.; Alseekh, S.; Huang, L.; Qian, D.: Extensive nrDNA ITS polymorphism in Lycium: Non-concerted evolution and the identification of pseudogenes. Frontiers in Plant Science 13, 984579 (2022)

Ishihara, H.; Alseekh, S.; Feil, R.; Perera, P.; George, G. M.; Niedzwiecki, P.; Arrivault, S.; Zeeman, S. C.; Fernie, A. R.; Lunn, J. E. et al.; Smith, A. M.; Stitt, M.: Rising rates of starch degradation during daytime and trehalose 6-phosphate optimize carbon availability. Plant Physiology 189 (4), pp. 1976 - 2000 (2022)

Rivas, F.J.M.; Blanco-Portales, R.; Molina-Hidalgo, F.; Caballero, J.; de Souza, L. P.; Alseekh, S.; Fernie, A. R.; Munoz-Blanco, J.; Rodriguez-Franco, A.: Azacytidine arrests ripening in cultivated strawberry (Fragaria x ananassa) by repressing key genes and altering hormone contents. BMC Plant Biology 22 (1), 278 (2022)

Rivas, F.J.M.; Blanco-Portales, R.; Moyano, E.; Alseekh, S.; Caballero, J. L.; Schwab, W.; Fernie, A. R.; Muñoz-Blanco, J.; Molina-Hidalgo, F. J.: Strawberry fruit FanCXE1 carboxylesterase is involved in the catabolism of volatile esters during the ripening process. Horticulture Research 9, uhac095 (2022)

Sageman-Furnas, K.; Nurmi, M.; Contag, M.; Plötner, B.; Alseekh, S.; Wiszniewski, A.A.G.; Fernie, A. R.; Smith, L. M.; Laitinen, R. A.: A. thaliana Hybrids Develop Growth Abnormalities Through Integration of Stress, Hormone and Growth Signalling. Plant and Cell Physiology 63 (7), pp. 944 - 954 (2022)

Tabatabaei, I.; Alseekh, S.; Shahid, M.; Leniak, E.; Wagner, M.; Mahmoudi, H.; Thushar, S.; Fernie, A. R.; Murphy, K. M.; Schmöckel, S. M. et al.; Tester, M.; Mueller-Roeber, B.; Skirycz, A.; Balazadeh, S.: The diversity of quinoa morphological traits and seed metabolic composition. Scientific Data 9 (1), 323 (2022)

Salem, M.A.; El-Shiekh, R. A.; Fernie, A. R.; Alseekh, S.; Zayed, A.: Metabolomics-based profiling for quality assessment and revealing the impact of drying of Turmeric (Curcuma longa L.). Scientific Reports 12 (1), 10288 (2022)

Yokoyama, R.; de Oliveira, M.V.V.; Takeda-Kimura, Y.; Ishihara, H.; Alseekh, S.; Arrivault, S.; Kukshal, V.; Jez, J.M.; Stitt, M.; Fernie, A. R. et al.; Maeda, H.A.: Point mutations that boost aromatic amino acid production and CO2 assimilation in plants. Science Advances 8 (23), eabo3416 (2022)

Alseekh, S.; Zhu, F.; Vallarino, J. G.; Sokolowska, E.; Yoshida, T.; Bergmann, S.; Wendenburg, R.; Bolze, A.; Skirycz, A.; Avin-Wittenberg, T. et al.; Fernie, A. R.: Autophagy modulates the metabolism and growth of tomato fruit during development. Horticulture Research 9, uhac129 (2022)

Powell, A. F.; Feder, A.; Li, J.; Schmidt, M. H.-W.; Courtney, L.; Alseekh, S.; Jobson, E. M.; Vogel, A.; Xu, Y.; Lyon, D. et al.; Dumschott, K.; McHale, M.; Sulpice, R.; Bao, K.; Lal, R.; Duhan, A.; Hallab, A.; Denton, A. K.; Bolger, M. E.; Fernie, A. R.; Hind, S. R.; Mueller, L. A.; Martin, G. B.; Fei, Z.; Martin, C.; Giovannoni, J. J.; Strickler, S. R.; Usadel, B.: A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity. The Plant Journal 110 (6), pp. 1791 - 1810 (2022)

Zhu, F.; Wijesingha Ahchige, M.; Brotman, Y.; Alseekh, S.; Zsögön, A.; Fernie, A. R.: Bringing more players into play: Leveraging stress in genome wide association studies. Journal of Plant Physiology 271, 153657 (2022)

Fernie, A. R.; Alseekh, S.: Metabolomic selection–based machine learning improves fruit taste prediction. Proceedings of the National Academy of Sciences of the United States of America 199 (9), e2201078119 (2022)