Weiwei, W.; Li, K.; Alseekh, S.; Omranian, N.; Zhao, L.; Zhou, Y.; Xiao, Y.; Jin, M.; Yang, N.; Liu, H. et al.; Florian, A.; Li, W.; Pan, Q.; Nikoloski, Z.; Yan, J.; Fernie, A. R.: Genetic Determinants of the Network of Primary Metabolism and Their Relationships to Plant Performance in a Maize Recombinant Inbred Line Population. The Plant Cell 27 (7), pp. 1839 - 1856 (2015)

Zhang, Y.; Butelli, E.; Alseekh, S.; Tohge, T.; Rallapalli, G.; Luo, J.; Kawar, P. G.; Hill, L.; Santino, A.; Fernie, A. R. et al.; Martin, C.: Multi-level engineering facilitates the production of phenylpropanoid compounds in tomato. Nature communications 6, 8635 (2015)

Bolger, A. M.; Scossa, F.; Bolger, A. M.; Lanz, C.; Maumus, F.; Tohge, T.; Quesneville, H.; Alseekh, S.; Sorensen, I.; Lichtenstein, G. et al.; Fich, E. A.; Conte, M.; Keller, H.; Schneeberger, K.; Schwacke, R.; Ofner, I.; Vrebalov, J.; Xu, Y.; Osorio, S.; Aflitos, S. A.; Schijlen, E.; Jimenez-Gomez, J. M.; Ryngajllo, M.; Kimura, S.; Kumar, R.; Koenig, D.; Headland, L. R.; Maloof, J. N.; Sinha, N.; van Ham, R. C. H. J.; Lankhorst, R. K.; Mao, L.; Vogel, A.; Arsova, B.; Panstruga, R.; Fei, Z.; Rose, J. K. C.; Zamir, D.; Carrari, F. F.; Giovannoni, J. J.; Weigel, D.; Usadel, B.; Fernie, A. R.: The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Genetics 46 (9), pp. 1034 - 1038 (2014)

Malinova, I.; Mahlow, S.; Alseekh, S.; Orawetz, T.; Fernie, A. R.; Baumann, O.; Steup, M.; Fettke, J.: Double Knockout Mutants of Arabidopsis Grown under Normal Conditions Reveal that the Plastidial Phosphorylase Isozyme Participates in Transitory Starch Metabolism. Plant Physiology 164 (2), pp. 907 - 921 (2014)

Malinova, I.; Kunz, H.-H.; Alseekh, S.; Herbst, K.; Fernie, A. R.; Gierth, M.; Fettke, J.: Reduction of the Cytosolic Phosphoglucomutase in Arabidopsis Reveals Impact on Plant Growth, Seed and Root Development, and Carbohydrate Partitioning. PLoS One 9 (11), e112468 (2014)

Malinova, I.; Mahlow, S.; Alseekh, S.; Orawetz, T.; Fernie, A. R.; Baumann, O.; Steup, M.; Fettke, J.: Double knock-out mutants of Arabidopsis thaliana grown under normal conditions reveal that the plastidial phosphorylase isozyme (PHS1) participates in transitory starch metabolism. Plant Physiology 164 (2), pp. 907 - 921 (2013)

Toujani, W.; Munoz-Bertomeu, J.; Flores-Tornero, M.; Rosa-Tellez, S.; Anoman, A. D.; Alseekh, S.; Fernie, A. R.; Ros, R.: Functional Characterization of the Plastidial 3-Phosphoglycerate Dehydrogenase Family in Arabidopsis. Plant Physiology 163 (3), pp. 1164 - 1178 (2013)

de Godoy, F.; Bermudez, L.; Lira, B. S.; de Souza, A. P.; Elbl, P.; Demarco, D.; Alseekh, S.; Insani, M.; Buckeridge, M.; Almeida, J. et al.; Grigioni, G.; Fernie, A. R.; Carrari, F.; Rossi, M.: Galacturonosyltransferase 4 silencing alters pectin composition and carbon partitioning in tomato. Journal of Experimental Botany 64 (8), pp. 2449 - 2466 (2013)

Zhu, F.; Bulut, M.; Cheng, Y.; Alseekh, S.; Fernie, A. R.: Metabolite-Based Genome-Wide Association Studies of Large-Scale Metabolome Analysis to Illustrate Alterations in the Metabolite Landscape of Plants upon Responses to Stresses. In: Methods in Molecular Biology, Vol. 2642, pp. 241 - 255 (2023)

Alseekh, S.; Fernie, A. R.: Using Metabolomics to Assist Plant Breeding. In: Crop Breeding: Genetic Improvement Methods, Vol. 2264, pp. 33 - 46 (Ed. Tripodi, P.). Springer US, New York, NY (2021)

Wu, S.; Alseekh, S.; Brotman, Y.; Fernie, A. R.: Metabolomic Analysis of Natural Variation in Arabidopsis. In: ARABIDOPSIS PROTOCOLS, 4 EDITION, Vol. 2200, pp. 393 - 411 (Eds. Sanchez-Serrano, J.; Salinas, J.) (2021)

Alseekh, S.; Wu, S.; Brotman, Y.; Fernie, A. R.: Guidelines for Sample Normalization to Minimize Batch Variation for Large-Scale Metabolic Profiling of Plant Natural Genetic Variance. In: Methods in Molecular Biology, Vol. 1778, pp. 33 - 46 (Ed. António, C.). Humana Press, Clifton, N.J. (2018)

Yu, Y.; Alseekh, S.; Zhu, Z.; Zhou , K.; Fernie, A. R.: Multiomics and biotechnologies for understanding and influencing cadmium accumulation and stress response in plants. Plant Biotechnology Journal 22 (10), pp. 2641 - 2659 (2024)

Li, X.; Tieman, D.; Alseekh, S.; Fernie, A. R.; Klee, H. J.: Natural variations in the Sl-AKR9 aldo/keto reductase gene impact fruit flavor volatile and sugar contents. The Plant Journal 115 (4), pp. 1134 - 1150 (2023)

Sreenivasulu, N.; Alseekh, S.; Tiozon, R. N.; Graner, A.; Martin, C.; Fernie, A. R.: Metabolic Signatures from Genebank Collections: An Underexploited Resource for Human Health? Annual Review of Food Science and Technology 14, pp. 183 - 202 (2023)

Zhu, F.; Wen, W.; Cheng, Y.; Alseekh, S.; Fernie, A. R.: Integrating multiomics data accelerates elucidation of plant primary and secondary metabolic pathways. aBIOTECH 4, pp. 47 - 56 (2023)

Alamillo, J.M.; López, C.M.; Martinez Rivas, F.J.; Torralbo, F.; Bulut, M.; Alseekh, S.: Clustered regularly interspaced short palindromic repeats/CRISPR-associated protein and hairy roots: a perfect match for gene functional analysis and crop improvement. Current Opinion in Biotechnology 79, 102876 (2023)

Hayashi , K.; Alseekh, S.; Fernie, A. R.: Genetic and epigenetic control of the plant metabolome. Proteomics 23 (13-14), 2200104 (2023)

Alseekh, S.; Scossa, F.; Wen, W.; Luo, J.; Yan, J.; Beleggia, R.; Klee, H. J.; Huang, S.; Papa, R.; Fernie, A. R.: Domestication of Crop Metabolomes: Desired and Unintended Consequences. Trends in Plant Science 26 (6), pp. 650 - 661 (2021)

de Souza, L. P.; Alseekh, S.; Brotman, Y.; Fernie, A. R.: Network based strategies in metabolomics data analysis and interpretation: from molecular networking to biological interpretation. Expert Review of Proteomics 17 (4), pp. 243 - 255 (2020)