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Zeitschriftenartikel (4012)

1.
Zeitschriftenartikel
Arend, M.; Yuan, Y.; Ruiz-Sola, M.Á.; Omranian, N.; Nikoloski, Z.; Petroutsos, D.: Widening the landscape of transcriptional regulation of green algal photoprotection. Nature Communications 14 (1), 2687 (2023)
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2.
Zeitschriftenartikel
Artins, A.; Fernie, A. R.: FCS-like zinc finger proteins maintain energy homeostasis during stresses. Trends in Plant Science 28 (12), S. 1347 - 1349 (2023)
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3.
Zeitschriftenartikel
Back, G.; Walther, D.: Predictions of DNA mechanical properties at a genomic scale reveal potentially new functional roles of DNA flexibility. NAR: genomics and bioinformatics 5 (4), lqad097 (2023)
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4.
Zeitschriftenartikel
Barros, J.A.S.; Cavalcanti, J.H.F.; Pimentel, K.G.; Magen, S.; Soroka, Y.; Weiss, S.; Medeiros, D.B.; Nunes-Nesi, A.; Fernie, A. R.; Avin-Wittenberg, T. et al.; Araújo, W.L.: The interplay between autophagy and chloroplast vesiculation pathways under dark-induced senescence. Plant, Cell and Environment 46 (12), S. 3721 - 3736 (2023)
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5.
Zeitschriftenartikel
Duque-Jaramillo, A.; Ulmer, N.; Alseekh, S.; Bezrukov, I.; Fernie, A. R.; Skirycz, A.; Karasov, T.L.; Weigel, D.: The genetic and physiological basis of Arabidopsis thaliana tolerance to Pseudomonas viridiflava. New Phytologist 240 (5), S. 1961 - 1975 (2023)
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6.
Zeitschriftenartikel
Giese, J.; Eirich, J.; Walther, D.; Zhang, Y.; Lassowskat, I.; Fernie, A. R.; Elsässer, M.; Maurino, V. G.; Schwarzländer, M.; Finkemeier, I.: The interplay of post-translational protein modifications in Arabidopsis leaves during photosynthesis induction. The Plant Journal 116 (4), S. 1172 - 1193 (2023)
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7.
Zeitschriftenartikel
Langary, D.; Küken, A.; Nikoloski, Z.: The unraveling of balanced complexes in metabolic networks. Scientific Reports 13 (1), 5712 (2023)
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8.
Zeitschriftenartikel
Nattermann, M.; Wenk, S.; Pfister, P.; He, H.; Lee, S.H.; Szymanski, W.; Guntermann, N.; Zhu, F.; Nickel, L.; Wallner, C. et al.; Zarzycki, J.; Paczia, N.; Gaißert, N.; Franciò, G.; Leitner, W.; Gonzalez, R.; Erb, T.J.: Engineering a new-to-nature cascade for phosphate-dependent formate to formaldehyde conversion in vitro and in vivo. Nature Communications 14 (1), 2682 (2023)
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9.
Zeitschriftenartikel
Pinsorn, P.; Sanachai, K.; Rungrotmongkol, T.; Hoefgen, R.; Watanabe, M.; Brückner, F.; Nakabayashi, R.; Mori, T.; Oikawa, A.; Sasaki, R. et al.; Sucharitakul, J.; Saito, K.; Sirikantaramas, S.: Sulfur metabolism in durian pulps: Factors contributing to the production of volatile sulfur compounds during fruit ripening. Postharvest Biology and Technology 206, 112533 (2023)
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10.
Zeitschriftenartikel
Qian, D.; Xi, J.; Nie, Y.; Zou, M.; Zhang, J.; Alseekh, S.; Fernie, A. R.; Chen, J.; Huang, L.: Chemical characterization of dicaffeoyl polyamine derivatives to understand specific secondary metabolites in goji berry. Journal of Food Composition and Analysis 122, 105434 (2023)
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11.
Zeitschriftenartikel
Tan, Q.W.; Lim, P.K.; Chen, Z.; Pasha, A.; Provart, N.; Arend, M.; Nikoloski, Z.; Mutwil, M.: Cross-stress gene expression atlas of Marchantia polymorpha reveals the hierarchy and regulatory principles of abiotic stress responses. Nature Communications 14 (1), 986 (2023)
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12.
Zeitschriftenartikel
Youssef, W.A.; Feil, R.; Saint-Sorny, M.; Johnson, X.; Lunn, J. E.; Grimm, B.; Brzezowski, P.: Singlet oxygen-induced signalling depends on the metabolic status of the Chlamydomonas reinhardtii cell. Communications Biology 6, 529 (2023)
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13.
Zeitschriftenartikel
Aarabi, F.; Ghigi, A.; Wijesingha Ahchige, M.; Bulut, M.; Geigenberger, P.; Neuhaus, H. E.; Sampathkumar, A.; Alseekh, S.; Fernie, A. R.: Genome-Wide Association Study unveils ascorbate regulation by PAS/LOV PROTEIN during high light acclimation. Plant Physiology 193 (3), S. 2037 - 2054 (2023)
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14.
Zeitschriftenartikel
Bortlik, J.; Lühle, J.; Alseekh, S.; Weiste, C.; Fernie, A. R.; Dröge-Laser, W.; Börnke, F.: DOMAIN OF UNKNOWN FUNCTION581-9 negatively regulates SnRK1 kinase activity. Plant Physiology, kiad594 (2023)
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15.
Zeitschriftenartikel
Bulut, M.; Nunes-Nesi, A.; Fernie, A. R.; Alseekh, S.: Characterization of PetM cytochrome b6f subunit 7 domain-containing protein in tomato. Horticulture Research (2023)
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16.
Zeitschriftenartikel
Bulut, M.; Wendenburg, R.; Bitocchi, E.; Bellucci, E.; Kroc, M.; Gioia, T.; Susek, K.; Papa, R.; Fernie, A. R.; Alseekh, S.: A Comprehensive Metabolomics and Lipidomics Atlas for the Legumes Common Bean, Chickpea, Lentil and Lupin. The Plant Journal 116 (4), S. 1152 - 1171 (2023)
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17.
Zeitschriftenartikel
El-Azaz, J.; Moore, B.; Takeda-Kimura, Y.; Yokoyama, R.; Wijesingha Ahchige, M.; Chen, X.; Schneider, M.; Maeda, H.A.: Coordinated regulation of the entry and exit steps of aromatic amino acid biosynthesis supports the dual lignin pathway in grasses. Nature Communications 14, 7242 (2023)
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18.
Zeitschriftenartikel
Fernie, A. R.; Yan, J.; Aharoni, A.; Ma, J.: Editorial: The past, present and future of The Plant Journal Resource Articles. The Plant Journal 116 (4), S. 967 - 973 (2023)
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19.
Zeitschriftenartikel
John, S.; Apelt, F.; Kumar, A.; Acosta, I.; Bents, D.; Annunziata, M. G.; Fichtner, F.; Gutjahr, C.; Mueller-Roeber, B.; Olas, J. J.: Transcription factor HSFA7b controls thermomemory at the shoot apical meristem by regulating ethylene biosynthesis and signaling in Arabidopsis. Plant Communications, 100743 (2023)
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20.
Zeitschriftenartikel
Keller, J.-M.; Frieboes, M. J.; Jödecke, L.; Kappel, S.; Wulff, N.; Rindfleisch, T.; Sandoval-Ibanez, O.; Gerlach, I.; Thiele, W.; Bock, R. et al.; Eirich, J.; Finkemeier, I.; Schünemann, D.; Zoschke, R.; Schöttler, M. A.; Armbruster, U.: Eukaryote-specific assembly factor DEAP2 mediates an early step of photosystem II assembly in Arabidopsis. Plant Physiology 193 (3), S. 1970 - 1986 (2023)
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21.
Zeitschriftenartikel
Küken, A.; Treves, H.; Nikoloski, Z.: A simulation-free constrained regression approach for flux estimation in isotopically nonstationary metabolic flux analysis with applications in microalgae. Frontiers in Plant Science 14, 1140829 (2023)
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22.
Zeitschriftenartikel
Laskowski, J.; Ruf, S.; Bock, R.; Zoschke, R.: Chloroplasten: kleine Zellorganellen mit großem Potenzial. Biospektrum 29 (7), S. 803 - 805 (2023)
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23.
Zeitschriftenartikel
Li, C.; Huang, W.; Han, X.; Zhao, G.; Zhang, W.; He, W.; Nie, B.; Chen, X.; Zhang, T.; Bai, W. et al.; Zhang, X.; He, J.; Zhao, C.; Fernie, A. R.; Tschaplinski, T.J.; Yang, X.; Yan, S.; Wang, L.: Diel dynamics of multi-omics in elkhorn fern provide new insights into weak CAM photosynthesis. Plant Communications 4 (5), 100594 (2023)
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24.
Zeitschriftenartikel
Moura Ferreira, M.A.D.; Wendering, P.; Arend, M.; Batista da Silveira, W.; Nikoloski, Z.: Accurate prediction of in vivo protein abundances by coupling constraint-based modelling and machine learning. Metabolic Engineering 80, S. 184 - 192 (2023)
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25.
Zeitschriftenartikel
Pratx, L.; Wendering, P.; Kappel, C.; Nikoloski, Z.; Bäurle, I.: Histone retention preserves epigenetic marks during heat stress-induced transcriptional memory in plants. The EMBO Journal, e113595 (2023)
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26.
Zeitschriftenartikel
Shen, S.; Wang, S.; Yang, C.; Wang, C.; Zhou, Q.; Zhou, S.; Zhang, R.; Li, Y.; Wang, Z.; Dai, L. et al.; Peng, W.; Hao, Y.; Guo, H.; Cao, G.; Liu, X.; Yao, F.; Xu, Q.; Fernie, A. R.; Luo, J.: Elucidation of the melitidin biosynthesis pathway in pummelo. Journal of Integrative Plant Biology 65 (11), S. 2505 - 2518 (2023)
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27.
Zeitschriftenartikel
Su, C.; Kokosza, A.; Xie, X.; Pěnčík, A.; Zhang, Y.; Raumonen, P.; Shi, X.; Muranen, S.; Topcu, M. K.; Immanen, J. et al.; Hagqvist, R.; Safronov, O.; Alonso-Serra, J.; Eswaran, G.; Venegas, M. P.; Ljung, K.; Ward, S.; Mähönen, A. P.; Himanen, K.; Salojärvi, J.; Fernie, A. R.; Novák, O.; Leyser, O.; Pałubicki, W.; Helariutta, Y.; Nieminen, K.: Tree architecture: A strigolactone-deficient mutant reveals a connection between branching order and auxin gradient along the tree stem. Proceedings of the National Academy of Sciences of the United States of America 120 (48), e2308587120 (2023)
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28.
Zeitschriftenartikel
Székely, A.; Gulyás, Z.; Balogh, E.; Payet, R.; Dalmay, T.; Kocsy, G.; Kalapos, B.: Identification of ascorbate- and salicylate-responsive miRNAs and verification of the spectral control of miR395 in Arabidopsis. Physiologia Plantarum 175 (6), e14070 (2023)
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29.
Zeitschriftenartikel
Tóth, D.; Kuntam, S.; Ferenczi, Á.; Vidal-Meireles, A.; Kovács, L.; Wang, L.; Sarkadi, Z.; Migh, E.; Szentmihályi, K.; Tengölics, R. et al.; Neupert, J.; Bock, R.; Jonikas, M. C.; Molnar, A.; Tóth, S. Z.: Chloroplast phosphate transporter CrPHT4-7 regulates phosphate homeostasis and photosynthesis in Chlamydomonas. Plant Physiology, kiad607 (2023)
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30.
Zeitschriftenartikel
von Bismarck, T.; Wendering, P.; de Souza, L. P.; Ruß, J.; Strandberg, L.; Heyneke, E.; Walker, B. J.; Schöttler, M. A.; Fernie, A. R.; Nikoloski, Z. et al.; Armbruster, U.: Growth in fluctuating light buffers plants against photorespiratory perturbations. Nature Communications 14 (1), 7052 (2023)
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31.
Zeitschriftenartikel
Zemach, I.; Alseekh, S.; Tadmor-Levi, R.; Fisher, J.; Torgeman, S.; Trigerman, S.; Nauen, J.; Hayut, S. F.; Mann, V.; Rochsar, E. et al.; Finkers, R.; Wendenburg, R.; Osorio, S.; Bergmann, S.; Lunn, J. E.; Semel, Y.; Hirschberg, J.; Fernie, A. R.; Zamir, D.: Multi-year field trials provide a massive repository of trait data on a highly diverse population of tomato and uncover novel determinants of tomato productivity. The Plant Journal 116 (4), S. 1136 - 1151 (2023)
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32.
Zeitschriftenartikel
Zhang, Y.; Martinez-Jaime, S.; Bulut, M.; Graf, A.; Fernie, A. R.: The conditional mitochondrial protein complexome in Arabidopsis thaliana root and shoot. Plant Communications 4 (5), 100635 (2023)
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33.
Zeitschriftenartikel
Buelbuel, S.; Sakuraba, Y.; Sedaghatmehr, M.; Watanabe, M.; Hoefgen, R.; Balazadeh, S.; Mueller-Roeber, B.: Arabidopsis BBX14 negatively regulates nitrogen starvation- and dark-induced leaf senescence. The Plant Journal 116 (1), S. 251 - 268 (2023)
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34.
Zeitschriftenartikel
Chung, K. P.; Loiacono, F.V.; Neupert, J.; Wu, M.; Bock, R.: An RNA thermometer in the chloroplast genome of Chlamydomonas facilitates temperature-controlled gene expression. Nucleic Acids Research 51 (20), S. 11386 - 11400 (2023)
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35.
Zeitschriftenartikel
Dziubek, D.; Poeker, L.; Siemiatkowska, B.; Graf, A.; Marino, G.; Alseekh, S.; Arrivault, S.; Fernie, A. R.; Armbruster, U.; Geigenberger, P.: NTRC and thioredoxins m1/m2 underpin the light acclimation of plants on proteome and metabolome levels. Plant Physiology (2023)
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36.
Zeitschriftenartikel
Fernie, A. R.; Zhang, Y.: Observations and implication of thermal tolerance in the Arabidopsis proteome. Cell Systems 14 (10), S. 819 - 821 (2023)
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37.
Zeitschriftenartikel
Ferreira, M. A. d. M.; Silveira, W. B. d.; Nikoloski, Z.: PARROT: Prediction of enzyme abundances using protein-constrained metabolic models. PLoS Computational Biology 19 (10), e1011549 (2023)
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38.
Zeitschriftenartikel
Forner, J.; Kleinschmidt, D.; Meyer, E. H.; Gremmels, J.; Morbitzer, R.; Lahaye, T.; Schöttler, M. A.; Bock, R.: Targeted knockout of a conserved plant mitochondrial gene by genome editing. Nature Plants 9, S. 1818 - 1831 (2023)
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39.
Zeitschriftenartikel
Fuchs, P.; Feixes-Prats, E.; Arruda, P.; Feitosa-Araújo, E.; Fernie, A. R.; Grefen, C.; Lichtenauer, S.; Linka, N.; de Godoy Maia, I.; Meyer, A. J. et al.; Schilasky, S.; Sweetlove, L. J.; Wege, S.; Weber, A. P. M.; Millar, A. H.; Keech, O.; Florez-Sarasa, I.; Barreto, P.; Schwarzländer, M.: PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 2 localizes to the Golgi. Plant Physiology, kiad540 (2023)
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40.
Zeitschriftenartikel
Heinze, J.; Werger, L.; Ogden, M.; Heinken, T.; Hoefgen, R.; Weber, E.: Short wind pulses consistently change the morphology of roots, but not of shoots, across young plants of different growth forms. Stress-the International Journal on the Biology of Stress 3, 43 (2023)
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41.
Zeitschriftenartikel
Incarbone, M.; Bradamante, G.; Pruckner, F.; Wegscheider, T.; Rozhon, W.; Nguyen, V.; Gutzat, R.; Mérai, Z.; Lendl, T.; MacFarlane, S. et al.; Nodine, M.; Scheid, O. M.: Salicylic acid and RNA interference mediate antiviral immunity of plant stem cells. Proceedings of the National Academy of Sciences of the United States of America 120 (42), e2302069120 (2023)
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42.
Zeitschriftenartikel
Lamm, C. E.; Rabbi, I. Y.; Medeiros, D.B.; Rosado-Souza, L.; Pommerrenig, B.; Dahmani, I.; Rüscher, D.; Hofmann, J.; van Doorn; M., A. et al.; Schlereth, A.; Neuhaus, H. E.; Fernie, A. R.; Sonnewald, U.; Zierer, W.: Efficient sugar utilization and transition from oxidative to substrate-level phosphorylation in high starch storage roots of African cassava genotypes. The Plant Journal 116 (1), S. 38 - 57 (2023)
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43.
Zeitschriftenartikel
Martinez Rivas, F.J.; Fernie, A. R.: The use of metabolomics to understand aspects of metabolic regulation underpinning fruit ripening, development, and quality. Journal of Experimental Botany (2023)
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44.
Zeitschriftenartikel
Nicolas, P.; Pattison, R. J.; Zheng, Y.; Lapidot-Cohen, T.; Brotman, Y.; Osorio, S.; Fernie, A. R.; Fei, Z.; Catalá, C.: Starch deficiency in tomato causes transcriptional reprogramming that modulates fruit development, metabolism, and stress responses. Journal of Experimental Botany 74 (20), S. 6331 - 6348 (2023)
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45.
Zeitschriftenartikel
Ogden, M.; Whitcomb, S. J.; Khan, G. A.; Roessner, U.; Hoefgen, R.; Persson, S.: Cellulose biosynthesis inhibitor isoxaben causes nutrient-dependent and tissue-specific Arabidopsis phenotypes. Plant Physiology, kiad538 (2023)
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46.
Zeitschriftenartikel
Pereira-Lima, Í.A.; Batista-Silva, W.; Siqueira, J.A.; Silva, M.F.; Medeiros, D.B.; Cavalcanti, J.H.; Gonçalves, J.F.D.C.; Ribeiro, D.M.; Fernie, A. R.; Nunes-Nesi, A. et al.; Araújo, W.L.: Differential Aluminum tolerance in Arabidopsis thaliana ecotypes is seemingly related to metabolite changes. Environmental and Experimental Botany 214, 105472 (2023)
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47.
Zeitschriftenartikel
Rosa-Téllez, S.; Alcántara-Enguídanos, A.; Martinez-Seidel, F.; Casatejada-Anchel, R.; Saeheng, S.; Bailes, C. L.; Erban, A.; Medeiros, D.B.; Alepúz, P.; Matus, J. T. et al.; Kopka, J.; Muñoz-Bertomeu, J.; Krueger, S.; Roje, S.; Fernie, A. R.; Ros, R.: The serine-glycine-one carbon metabolic network orchestrates changes in nitrogen and sulfur metabolism and shapes plant development. The Plant Cell, koad256 (2023)
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48.
Zeitschriftenartikel
Sarmiento-Mañús, R.; Fontcuberta-Cervera, S.; González-Bayón, R.; Hannah, M. A.; Álvarez-Martínez, F. J.; Barrajón-Catalán, E.; Micol, V.; Quesada, V.; Ponce, M. R.; Micol, J. L.: Analysis of the Arabidopsis venosa4-0 Mutant Supports the Role of VENOSA4 in dNTP Metabolism. Plant Science 335, 111819 (2023)
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49.
Zeitschriftenartikel
Segarra-Medina, C.; Alseekh, S.; Fernie, A. R.; Rambla, J. L.; Pérez-Clemente, R. M.; Gómez-Cádenas, A.; Zandalinas, S. I.: Abscisic acid promotes plant acclimation to the combination of salinity and high light stress. Plant Physiology and Biochemistry 203, 108008 (2023)
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50.
Zeitschriftenartikel
Shan, N.; Zhang, Y.; Guo, Y.; Zhang, W.; Nie, J.; Fernie, A. R.; Sui, X.: Cucumber malate decarboxylase, CsNADP-ME2, functions in the balance of carbon and amino acid metabolism in fruit. Horticulture Research, uhad216 (2023)
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