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Zeitschriftenartikel (199)

1.
Zeitschriftenartikel
Sageman-Furnas, K.; Duarte, G. T.; Laitinen, R. A.E.: Detailing early shoot growth arrest in Kro-0 x BG-5 hybrids of Arabidopsis thaliana. Plant and Cell Physiology, pcad167 (2023)
2.
Zeitschriftenartikel
Karakas, E.; Ferrante, P.; Schafleitner, R.; Giuliano, G.; Fernie, A. R.; Alseekh, S.: Plant Sample Collection and Shipment for Multi-omic Analyses and Phytosanitary Evaluation. Current Protocols 3 (12), e952 (2023)
3.
Zeitschriftenartikel
Murik, O.; Geffen, O.; Shotland, Y.; Fernandez-Pozo, N.; Ullrich, K. K.; Walther, D.; Rensing, S. A.; Treves, H.: Genomic imprints of unparalleled growth. New Phytologist 241 (3), S. 1144 - 1160 (2023)
4.
Zeitschriftenartikel
Lai, D.; Zhang, K.; He, Y.; Fan, Y.; Li, W.; Shi, Y.; Gao, Y.; Huang, X.; He, J.; Zhao, H. et al.; Lu, X.; Xiao, Y.; Cheng, J.; Ruan, J.; Georgiev, M. I.; Fernie, A. R.; Zhou, M.: Multi-omics identification of a key glycosyl hydrolase gene FtGH1 involved in rutin hydrolysis in Tartary buckwheat (Fagopyrum tataricum). Plant Biotechnology Journal (2023)
5.
Zeitschriftenartikel
Bradamante, G.; Nguyen, V. H.; Incarbone, M.; Meir, Z.; Bente, H.; Donà, M.; Lettner, N.; Mittelsten Scheid, O.; Gutzat, R.: Two ARG ONAUTE proteins loaded with transposon-derived small RNAs are associated with the reproductive cell lineage in Arabidopsis. The Plant Cell, koad295 (2023)
6.
Zeitschriftenartikel
Xu, W.; Li, S.; Bock, R.; Zhang, J.: A heat-inducible expression system for external control of gene expression in plastids. Plant Biotechnology Journal (2023)
7.
Zeitschriftenartikel
Zhang, Y.; Wiese, L.; Fang, H.; Alseekh, S.; de Souza, L. P.; Scossa, F.; Molloy, J.; Christmann, M.; Fernie, A. R.: Synthetic biology identifies the minimal gene set required for Paclitaxel biosynthesis in a plant chassis. Molecular Plant 16 (12), S. 1951 - 1961 (2023)
8.
Zeitschriftenartikel
Arend, M.; Yuan, Y.; Ruiz-Sola, M.Á.; Omranian, N.; Nikoloski, Z.; Petroutsos, D.: Widening the landscape of transcriptional regulation of green algal photoprotection. Nature Communications 14 (1), 2687 (2023)
9.
Zeitschriftenartikel
Artins, A.; Fernie, A. R.: FCS-like zinc finger proteins maintain energy homeostasis during stresses. Trends in Plant Science 28 (12), S. 1347 - 1349 (2023)
10.
Zeitschriftenartikel
Back, G.; Walther, D.: Predictions of DNA mechanical properties at a genomic scale reveal potentially new functional roles of DNA flexibility. NAR: genomics and bioinformatics 5 (4), lqad097 (2023)
11.
Zeitschriftenartikel
Barros, J.A.S.; Cavalcanti, J.H.F.; Pimentel, K.G.; Magen, S.; Soroka, Y.; Weiss, S.; Medeiros, D.B.; Nunes-Nesi, A.; Fernie, A. R.; Avin-Wittenberg, T. et al.; Araújo, W.L.: The interplay between autophagy and chloroplast vesiculation pathways under dark-induced senescence. Plant, Cell and Environment 46 (12), S. 3721 - 3736 (2023)
12.
Zeitschriftenartikel
Bulut, M.; Nunes-Nesi, A.; Fernie, A. R.; Alseekh, S.: Characterization of PetM cytochrome b6f subunit 7 domain-containing protein in tomato. Horticulture Research 10 (12), uhad224 (2023)
13.
Zeitschriftenartikel
Duque-Jaramillo, A.; Ulmer, N.; Alseekh, S.; Bezrukov, I.; Fernie, A. R.; Skirycz, A.; Karasov, T.L.; Weigel, D.: The genetic and physiological basis of Arabidopsis thaliana tolerance to Pseudomonas viridiflava. New Phytologist 240 (5), S. 1961 - 1975 (2023)
14.
Zeitschriftenartikel
Fernie, A. R.: If you go down to the woods today you're in for a big surprise: mapping the diverse phenotypes of the European woodland strawberry. The Plant Journal 116 (5), S. 1199 - 1200 (2023)
15.
Zeitschriftenartikel
Giese, J.; Eirich, J.; Walther, D.; Zhang, Y.; Lassowskat, I.; Fernie, A. R.; Elsässer, M.; Maurino, V. G.; Schwarzländer, M.; Finkemeier, I.: The interplay of post-translational protein modifications in Arabidopsis leaves during photosynthesis induction. The Plant Journal 116 (4), S. 1172 - 1193 (2023)
16.
Zeitschriftenartikel
Gyuzeleva, D.; Benina, M.; Ivanova, V.; Vatov, E.; Alseekh, S.; Mladenova, T.; Mladenov, R.; Todorov, K.; Bivolarska, A.; Stoyanov, P.: Metabolome Profiling of Marrubium peregrinum L. and Marrubium friwaldskyanum Boiss Reveals Their Potential as Sources of Plant-Based Pharmaceuticals. International Journal of Molecular Sciences 24 (23), 17035 (2023)
17.
Zeitschriftenartikel
Langary, D.; Küken, A.; Nikoloski, Z.: The unraveling of balanced complexes in metabolic networks. Scientific Reports 13 (1), 5712 (2023)
18.
Zeitschriftenartikel
Nattermann, M.; Wenk, S.; Pfister, P.; He, H.; Lee, S.H.; Szymanski, W.; Guntermann, N.; Zhu, F.; Nickel, L.; Wallner, C. et al.; Zarzycki, J.; Paczia, N.; Gaißert, N.; Franciò, G.; Leitner, W.; Gonzalez, R.; Erb, T.J.: Engineering a new-to-nature cascade for phosphate-dependent formate to formaldehyde conversion in vitro and in vivo. Nature Communications 14 (1), 2682 (2023)
19.
Zeitschriftenartikel
Pinsorn, P.; Sanachai, K.; Rungrotmongkol, T.; Hoefgen, R.; Watanabe, M.; Brückner, F.; Nakabayashi, R.; Mori, T.; Oikawa, A.; Sasaki, R. et al.; Sucharitakul, J.; Saito, K.; Sirikantaramas, S.: Sulfur metabolism in durian pulps: Factors contributing to the production of volatile sulfur compounds during fruit ripening. Postharvest Biology and Technology 206, 112533 (2023)
20.
Zeitschriftenartikel
Qian, D.; Xi, J.; Nie, Y.; Zou, M.; Zhang, J.; Alseekh, S.; Fernie, A. R.; Chen, J.; Huang, L.: Chemical characterization of dicaffeoyl polyamine derivatives to understand specific secondary metabolites in goji berry. Journal of Food Composition and Analysis 122, 105434 (2023)
21.
Zeitschriftenartikel
Qiu, H.; Zhang, X.; Zhang, Y.; Jiang, X.; Ren, Y.; Gao, D.; Zhu, X.; Usadel, B.; Fernie, A. R.; Wen, W.: Depicting the genetic and metabolic panorama of chemical diversity in the tea plant. Plant Biotechnology Journal (2023)
22.
Zeitschriftenartikel
Tan, Q.W.; Lim, P.K.; Chen, Z.; Pasha, A.; Provart, N.; Arend, M.; Nikoloski, Z.; Mutwil, M.: Cross-stress gene expression atlas of Marchantia polymorpha reveals the hierarchy and regulatory principles of abiotic stress responses. Nature Communications 14 (1), 986 (2023)
23.
Zeitschriftenartikel
Vicente, M. H.; MacLeod, K.; Zhu, F.; Rafael, D. D.; Figueira, A.; Fernie, A. R.; Mohareb, F.; Kevei, Z.; Thompson, A. J.; Zsögön, A. et al.; Peres, L. E. P.: The ORGAN SIZE (ORG) locus modulates both vegetative and reproductive gigantism in domesticated tomato. Annals of Botany 132 (7), S. 1233 - 1248 (2023)
24.
Zeitschriftenartikel
Youssef, W.A.; Feil, R.; Saint-Sorny, M.; Johnson, X.; Lunn, J. E.; Grimm, B.; Brzezowski, P.: Singlet oxygen-induced signalling depends on the metabolic status of the Chlamydomonas reinhardtii cell. Communications Biology 6, 529 (2023)
25.
Zeitschriftenartikel
Bao, Y.-J.; Chen, J.-X.; Zhang, Y.; Fernie, A. R.; Zhang, J.; Huang, B.-X.; Zhu, F.-Y.; Cao, F.-L.: Emerging role of jasmonic acid in woody plant development. Advanced Agrochem (2023)
26.
Zeitschriftenartikel
Aarabi, F.; Ghigi, A.; Wijesingha Ahchige, M.; Bulut, M.; Geigenberger, P.; Neuhaus, H. E.; Sampathkumar, A.; Alseekh, S.; Fernie, A. R.: Genome-Wide Association Study unveils ascorbate regulation by PAS/LOV PROTEIN during high light acclimation. Plant Physiology 193 (3), S. 2037 - 2054 (2023)
27.
Zeitschriftenartikel
Bulut, M.; Wendenburg, R.; Bitocchi, E.; Bellucci, E.; Kroc, M.; Gioia, T.; Susek, K.; Papa, R.; Fernie, A. R.; Alseekh, S.: A Comprehensive Metabolomics and Lipidomics Atlas for the Legumes Common Bean, Chickpea, Lentil and Lupin. The Plant Journal 116 (4), S. 1152 - 1171 (2023)
28.
Zeitschriftenartikel
Bysani, V. R.; Alam, A. S.M.; Bar-Even, A.; Machens, F.: Engineering and evolution of the complete Reductive Glycine Pathway in Saccharomyces cerevisiae for formate and CO2 assimilation. Metabolic Engineering 81, S. 167 - 181 (2023)
29.
Zeitschriftenartikel
El-Azaz, J.; Moore, B.; Takeda-Kimura, Y.; Yokoyama, R.; Wijesingha Ahchige, M.; Chen, X.; Schneider, M.; Maeda, H.A.: Coordinated regulation of the entry and exit steps of aromatic amino acid biosynthesis supports the dual lignin pathway in grasses. Nature Communications 14, 7242 (2023)
30.
Zeitschriftenartikel
Fernie, A. R.; Yan, J.; Aharoni, A.; Ma, J.: Editorial: The past, present and future of The Plant Journal Resource Articles. The Plant Journal 116 (4), S. 967 - 973 (2023)
31.
Zeitschriftenartikel
Keller, J.-M.; Frieboes, M. J.; Jödecke, L.; Kappel, S.; Wulff, N.; Rindfleisch, T.; Sandoval-Ibanez, O.; Gerlach, I.; Thiele, W.; Bock, R. et al.; Eirich, J.; Finkemeier, I.; Schünemann, D.; Zoschke, R.; Schöttler, M. A.; Armbruster, U.: Eukaryote-specific assembly factor DEAP2 mediates an early step of photosystem II assembly in Arabidopsis. Plant Physiology 193 (3), S. 1970 - 1986 (2023)
32.
Zeitschriftenartikel
Kudo, S. N.; Monte Bello, C.C.; Artins, A.; Caldana, C.; Satake, A.: Assessing the impacts of genetic defects on starch metabolism in Arabidopsis plants using the carbon homeostasis model. Journal of the Royal Society Interface 20 (208), 20230426 (2023)
33.
Zeitschriftenartikel
Küken, A.; Treves, H.; Nikoloski, Z.: A simulation-free constrained regression approach for flux estimation in isotopically nonstationary metabolic flux analysis with applications in microalgae. Frontiers in Plant Science 14, 1140829 (2023)
34.
Zeitschriftenartikel
Li, C.; Huang, W.; Han, X.; Zhao, G.; Zhang, W.; He, W.; Nie, B.; Chen, X.; Zhang, T.; Bai, W. et al.; Zhang, X.; He, J.; Zhao, C.; Fernie, A. R.; Tschaplinski, T.J.; Yang, X.; Yan, S.; Wang, L.: Diel dynamics of multi-omics in elkhorn fern provide new insights into weak CAM photosynthesis. Plant Communications 4 (5), 100594 (2023)
35.
Zeitschriftenartikel
Moura Ferreira, M.A.D.; Wendering, P.; Arend, M.; Batista da Silveira, W.; Nikoloski, Z.: Accurate prediction of in vivo protein abundances by coupling constraint-based modelling and machine learning. Metabolic Engineering 80, S. 184 - 192 (2023)
36.
Zeitschriftenartikel
Pratx, L.; Wendering, P.; Kappel, C.; Nikoloski, Z.; Bäurle, I.: Histone retention preserves epigenetic marks during heat stress-induced transcriptional memory in plants. The EMBO Journal 42, e113595 (2023)
37.
Zeitschriftenartikel
Shen, S.; Wang, S.; Yang, C.; Wang, C.; Zhou, Q.; Zhou, S.; Zhang, R.; Li, Y.; Wang, Z.; Dai, L. et al.; Peng, W.; Hao, Y.; Guo, H.; Cao, G.; Liu, X.; Yao, F.; Xu, Q.; Fernie, A. R.; Luo, J.: Elucidation of the melitidin biosynthesis pathway in pummelo. Journal of Integrative Plant Biology 65 (11), S. 2505 - 2518 (2023)
38.
Zeitschriftenartikel
Su, C.; Kokosza, A.; Xie, X.; Pěnčík, A.; Zhang, Y.; Raumonen, P.; Shi, X.; Muranen, S.; Topcu, M. K.; Immanen, J. et al.; Hagqvist, R.; Safronov, O.; Alonso-Serra, J.; Eswaran, G.; Venegas, M. P.; Ljung, K.; Ward, S.; Mähönen, A. P.; Himanen, K.; Salojärvi, J.; Fernie, A. R.; Novák, O.; Leyser, O.; Pałubicki, W.; Helariutta, Y.; Nieminen, K.: Tree architecture: A strigolactone-deficient mutant reveals a connection between branching order and auxin gradient along the tree stem. Proceedings of the National Academy of Sciences of the United States of America 120 (48), e2308587120 (2023)
39.
Zeitschriftenartikel
Székely, A.; Gulyás, Z.; Balogh, E.; Payet, R.; Dalmay, T.; Kocsy, G.; Kalapos, B.: Identification of ascorbate- and salicylate-responsive miRNAs and verification of the spectral control of miR395 in Arabidopsis. Physiologia Plantarum 175 (6), e14070 (2023)
40.
Zeitschriftenartikel
von Bismarck, T.; Wendering, P.; de Souza, L. P.; Ruß, J.; Strandberg, L.; Heyneke, E.; Walker, B. J.; Schöttler, M. A.; Fernie, A. R.; Nikoloski, Z. et al.; Armbruster, U.: Growth in fluctuating light buffers plants against photorespiratory perturbations. Nature Communications 14 (1), 7052 (2023)
41.
Zeitschriftenartikel
Zemach, I.; Alseekh, S.; Tadmor-Levi, R.; Fisher, J.; Torgeman, S.; Trigerman, S.; Nauen, J.; Hayut, S. F.; Mann, V.; Rochsar, E. et al.; Finkers, R.; Wendenburg, R.; Osorio, S.; Bergmann, S.; Lunn, J. E.; Semel, Y.; Hirschberg, J.; Fernie, A. R.; Zamir, D.: Multi-year field trials provide a massive repository of trait data on a highly diverse population of tomato and uncover novel determinants of tomato productivity. The Plant Journal 116 (4), S. 1136 - 1151 (2023)
42.
Zeitschriftenartikel
Zhang, Y.; Martinez-Jaime, S.; Bulut, M.; Graf, A.; Fernie, A. R.: The conditional mitochondrial protein complexome in Arabidopsis thaliana root and shoot. Plant Communications 4 (5), 100635 (2023)
43.
Zeitschriftenartikel
Buelbuel, S.; Sakuraba, Y.; Sedaghatmehr, M.; Watanabe, M.; Hoefgen, R.; Balazadeh, S.; Mueller-Roeber, B.: Arabidopsis BBX14 negatively regulates nitrogen starvation- and dark-induced leaf senescence. The Plant Journal 116 (1), S. 251 - 268 (2023)
44.
Zeitschriftenartikel
Chung, K. P.; Loiacono, F.V.; Neupert, J.; Wu, M.; Bock, R.: An RNA thermometer in the chloroplast genome of Chlamydomonas facilitates temperature-controlled gene expression. Nucleic Acids Research 51 (20), S. 11386 - 11400 (2023)
45.
Zeitschriftenartikel
Fernie, A. R.; Zhang, Y.: Observations and implication of thermal tolerance in the Arabidopsis proteome. Cell Systems 14 (10), S. 819 - 821 (2023)
46.
Zeitschriftenartikel
Ferreira, M. A. d. M.; Silveira, W. B. d.; Nikoloski, Z.: PARROT: Prediction of enzyme abundances using protein-constrained metabolic models. PLoS Computational Biology 19 (10), e1011549 (2023)
47.
Zeitschriftenartikel
Forner, J.; Kleinschmidt, D.; Meyer, E. H.; Gremmels, J.; Morbitzer, R.; Lahaye, T.; Schöttler, M. A.; Bock, R.: Targeted knockout of a conserved plant mitochondrial gene by genome editing. Nature Plants 9, S. 1818 - 1831 (2023)
48.
Zeitschriftenartikel
Heinze, J.; Werger, L.; Ogden, M.; Heinken, T.; Hoefgen, R.; Weber, E.: Short wind pulses consistently change the morphology of roots, but not of shoots, across young plants of different growth forms. Stress-the International Journal on the Biology of Stress 3, 43 (2023)
49.
Zeitschriftenartikel
Incarbone, M.; Bradamante, G.; Pruckner, F.; Wegscheider, T.; Rozhon, W.; Nguyen, V.; Gutzat, R.; Mérai, Z.; Lendl, T.; MacFarlane, S. et al.; Nodine, M.; Scheid, O. M.: Salicylic acid and RNA interference mediate antiviral immunity of plant stem cells. Proceedings of the National Academy of Sciences of the United States of America 120 (42), e2302069120 (2023)
50.
Zeitschriftenartikel
Lamm, C. E.; Rabbi, I. Y.; Medeiros, D.B.; Rosado-Souza, L.; Pommerrenig, B.; Dahmani, I.; Rüscher, D.; Hofmann, J.; van Doorn; M., A. et al.; Schlereth, A.; Neuhaus, H. E.; Fernie, A. R.; Sonnewald, U.; Zierer, W.: Efficient sugar utilization and transition from oxidative to substrate-level phosphorylation in high starch storage roots of African cassava genotypes. The Plant Journal 116 (1), S. 38 - 57 (2023)
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