Journal Article (94)
51.
Journal Article
1306, pp. 177 - 194 (2015)
Computational phosphorylation network reconstruction: methods and resources. Methods in Molecular Biology 52.
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2, 51 (2015)
Physicochemical characteristics of structurally determined metabolite-protein and drug-protein binding events with respect to binding specificity. Frontiers in molecular biosciences 53.
Journal Article
15, 137 (2015)
Substantial reprogramming of the Eutrema salsugineum (Thellungiella salsuginea) transcriptome in response to UV and silver nitrate challenge. BMC Plant Biology 54.
Journal Article
42 (7), pp. 655 - 667 (2015)
Assessment of drought tolerance and its potential yield penalty in potato. Functional Plant Biology 55.
Journal Article
10 (3), p. e0120533 - e0120533 (2015)
Multiple RNA Processing Defects and Impaired Chloroplast Function in Plants Deficient in the Organellar Protein-Only RNase P Enzyme. PLoS One 56.
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164 (1), pp. 181 - 200 (2014)
Characterization and Identification of cis-Regulatory Elements in Arabidopsis Based on Single-Nucleotide Polymorphism Information. Plant Physiology 57.
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26 (6), pp. 2367 - 2389 (2014)
Meta-Analysis of Arabidopsis thaliana Phospho-Proteomics Data Reveals Compartmentalization of Phosphorylation Motifs. Plant Cell 58.
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65 (4), pp. 1051 - 1068 (2014)
The sucrose–trehalose 6-phosphate (Tre6P) nexus: specificity and mechanisms of sucrose signalling by Tre6P. Journal of Experimental Botany 59.
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4, 540 (2013)
Reconstruction and analysis of nutrient-induced phosphorylation networks in Arabidopsis thaliana. Frontiers in Plant Science 60.
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3 (1), pp. 1 - 23 (2013)
The Metabolic Interplay between Plants and Phytopathogens. Metabolites 61.
Journal Article
39 (10-11), pp. 948 - 957 (2012)
Data management pipeline for plant phenotyping in a multisite project. Functional Plant Biology 62.
Journal Article
158 (4), pp. 1534 - 1541 (2012)
Matapax: An Online High-Throughput Genome-Wide Association Study Pipeline. Plant Physiology 63.
Journal Article
3, p. 207 (2012)
Characterization and Prediction of Protein Phosphorylation Hotspots in Arabidopsis thaliana. Frontiers in Plant Science 64.
Journal Article
3, p. 272 (2012)
Give It AGO: The Search for miRNA-Argonaute Sorting Signals in Arabidopsis thaliana Indicates a Relevance of Sequence Positions Other than the 5'-Position Alone. Frontiers in plant science 65.
Journal Article
4, p. 483 (2011)
Comparative analysis of miRNAs and their targets across four plant species. BMC Research Notes 66.
Journal Article
7 (6), p. e1002155 (2011)
Local Absence of Secondary Structure Permits Translation of mRNAs that Lack Ribosome-Binding Sites. PLoS Genetics 67.
Journal Article
17 (7), pp. 1247 - 1257 (2011)
The influence of the local sequence environment on RNA loop structures. Rna-a Publication of the Rna Society 68.
Journal Article
11, p. 188 (2010)
Single feature polymorphism (SFP)-based selective sweep identification and association mapping of growth-related metabolic traits in Arabidopsis thaliana. BMC Genomics 69.
Journal Article
6 (2), pp. 322 - 333 (2010)
Decision tree supported substructure prediction of metabolites from GC-MS profiles. Metabolomics 70.
Journal Article
153 (2), pp. 642 - 651 (2010)
Robin: An Intuitive Wizard Application for R-Based Expression Microarray Quality Assessment and Analysis. Plant Physiology 71.
Journal Article
11, p. 411 (2010)
Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana. BMC Genomics 72.
Journal Article
38 (3), pp. 970 - 980 (2010)
Sequence-structure relationships in RNA loops: establishing the basis for loop homology modeling. Nucleic Acids Research 73.
Journal Article
26 (13), pp. 1671 - 1672 (2010)
Modeling RNA loops using sequence homology and geometric constraints. Bioinformatics 74.
Journal Article
14 (3), pp. 249 - 259 (2010)
Dynamic Transcriptional and Metabolic Responses in Yeast Adapting to Temperature Stress. Omics-a Journal of Integrative Biology 75.
Journal Article
11, p. 607 (2010)
The complexity of gene expression dynamics revealed by permutation entropy. BMC Bioinformatics 76.
Journal Article
14 (3), pp. 261 - 274 (2010)
Metabolic Pathway Relationships Revealed by an Integrative Analysis of the Transcriptional and Metabolic Temperature Stress-Response Dynamics in Yeast. OMICS: A Journal of Integrative Biology 77.
Journal Article
37 (9), p. e66 (2009)
Identification and classification of ncRNA molecules using graph properties. Nucleic Acids Research 78.
Journal Article
69 (1-2), pp. 133 - 153 (2009)
Expression profiling of rice cultivars differing in their tolerance to long-term drought stress. Plant Molecular Biology 79.
Journal Article
10, p. 117 (2009)
Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins. BMC Bioinformatics 80.
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9 (7), pp. 1916 - 1924 (2009)
Ratio-dependent significance thresholds in reciprocal N-15-labeling experiments as a robust tool in detection of candidate proteins responding to biological treatment. Proteomics 81.
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150 (3), pp. 1541 - 1555 (2009)
Identification of Nutrient-Responsive Arabidopsis and Rapeseed MicroRNAs by Comprehensive Real-Time Polymerase Chain Reaction Profiling and Small RNA Sequencing. Plant Physiology 82.
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2, p. 100 (2008)
The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles. BMC Systems Biology 83.
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36 (Database issue), pp. D1015 - D1021 (2008)
PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Research 84.
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4, p. 11 (2008)
A plant resource and experiment management system based on the Golm Plant Database as a basic tool for omics research. Plant Methods 85.
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3, pp. 16 - 17 (2008)
Robin - Microarray Experimentanalyse leicht gemacht. GenomXPress: Informationen aus der Deutschen Genomforschung 86.
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179 (1), pp. 157 - 166 (2008)
Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii. Genetics 87.
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8, p. 216 (2007)
ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites. BMC Bioinformatics 88.
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23 (9), pp. 1164 - 1167 (2007)
pcaMethods - a bioconductor package providing PCA methods for incomplete data. Bioinformatics 89.
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3 (2), p. e11 (2007)
The Regulatory Code for Transcriptional Response Diversity and Its Relation to Genome Structural Properties in A. thaliana. PLoS Genetics 90.
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6 (1), pp. 150 - 160 (2006)
Noninvasive discrimination of rejection in cardiac allograft recipients using gene expression profiling. American Journal of Transplantation 91.
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114 (1 Suppl), pp. I21 - I26 (2006)
Gene expression profiles and B-type natriuretic peptide elevation in heart transplantation more than a hemodynamic marker. Circulation 92.
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279 (14), pp. 14179 - 14183 (2004)
Serine 171, a conserved residue in the gamma-aminobutyric acid type A (GABA(A)) receptor gamma 2 subunit, mediates subunit interaction and cell surface localization. Journal of Biological Chemistry 93.
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31 (13), pp. 3349 - 3351 (2003)
MolSurfer: a macromolecular interface navigator. Nucleic Acids Research 94.
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113 (3), pp. 369 - 381 (2003)
Closing the folding chamber of the eukaryotic chaperonin requires the transition state of ATP hydrolysis. Cell Book Chapter (9)
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Specifics of Metabolite-Protein Interactions and Their Computational Analysis and Prediction. In: Methods in Molecular Biology (Ed. Walker, J. M.) (2023)
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The combinatorics of cis-regulatory elements: from cooperatively acting motifs to gene regulatory networks. In: The analysis of cis-elements: Current developments, knowledge and applications to gene networking, pp. 176 - 188 (Eds. Berendzen, K.; Wanke, D.). Bentham Books, AG Bussum (2013)
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Mass spectral search and analysis using the Golm Metabolome Database. In: The Handbook of Plant Metabolomics, pp. 321 - 343 (Ed. 98.
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Conducting molecular biomarker discovery studies in plants. In: High Throughput Phenotyping in Plants, 10 (Ed. Normanly, J.). Humana Press Inc., Totowa, NJ, USA (2012)
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Progress in chemometrics and biostatistics for plant applications: Or a good red wine is a bad white wine. In: The biology of plant metabolomics, 10, 2011/05/03 Ed., pp. 317 - 342 (Ed. Hall, R. D.). Blackwell-Wiley, London, UK (2011)
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Integration of proteomic and metabolomic profiling as well as metabolic modeling for the functional analysis of metabolic networks. In: Bioinformatics for Comparative Proteomics, 21, 2010/12/01 Ed., pp. 341 - 363 (Eds. Wu, C. H.; Chen, C.). Humana Press Inc., Totowa, NJ, USA (2011)