Publications of Dirk Walther
Journal Article (85)
1.
Journal Article
4 (2), lqac027 (2022)
Graph-based models of the Oenothera mitochondrial genome capture the enormous complexity of higher plant mitochondrial DNA organization. NAR: genomics and bioinformatics 2.
Journal Article
13, 849329 (2022)
PRI: Re-analysis of a public mass cytometry dataset reveals patterns of effective tumor treatments. Frontiers in immunology 3.
Journal Article
2 (1), vbac001 (2022)
Biclique extension as an effective approach to identify missing links in metabolic compound-protein interaction networks. Bioinformatics advances 4.
Journal Article
22, 605 (2021)
COSNet(i): ComplexOme-Structural Network Interpreter used to study spatial enrichment in metazoan ribosomes. BMC Bioinformatics 5.
Journal Article
Tyr-Asp inhibition of glyceraldehyde 3-phosphate dehydrogenase affects plant redox metabolism. EMBO Journal, e106800 (2021)
6.
Journal Article
22 (1), 390 (2021)
Identification of cis-regulatory motifs in first introns and the prediction of intron-mediated enhancement of gene expression in Arabidopsis thaliana. BMC Genomics 7.
Journal Article
19 (3), pp. 477 - 489 (2021)
Deciphering Transcriptional Regulators of Banana Fruit Ripening by Regulatory Network Analysis. Plant Biotechnology Journal 8.
Journal Article
22 (11), 6160 (2021)
Spatially enriched paralog rearrangements argue functionally diverse ribosomes arise during cold acclimation in arabidopsis. International Journal of Molecular Sciences 9.
Journal Article
22 (11), 6123 (2021)
Genome-wide approach to identify quantitative trait loci for drought tolerance in tetraploid potato (Solanum tuberosum L.). International Journal of Molecular Sciences 10.
Journal Article
48 (20), pp. 11347 - 11369 (2020)
Determinants of correlated expression of transcription factors and their target genes. Nucleic Acids Research 11.
Journal Article
10 (1), 7202 (2020)
Polymorphisms in miRNA binding sites involved in metabolic diseases in mice and humans. Scientific Reports 12.
Journal Article
11, 1071 (2020)
Can Metabolite- and Transcript-Based Selection for Drought Tolerance in Solanum tuberosum Replace Selection on Yield in Arid Environments? Frontiers in Plant Science 13.
Journal Article
9 (3), 319 (2020)
Growth under fluctuating light reveals large trait variation in a panel of arabidopsis accessions. Plants 14.
Journal Article
21 (8), 2794 (2020)
Similar yet different–structural and functional diversity among arabidopsis thaliana LEA_4 proteins. International Journal of Molecular Sciences 15.
Journal Article
77, pp. 705 - 718 (2020)
A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana. Cellular and Molecular Life Sciences 16.
Journal Article
43 (9), pp. 2066 - 2079 (2020)
Metabolomic markers and physiological adaptations for high phosphate utilization efficiency in rice. Plant, Cell and Environment 17.
Journal Article
180 (1), pp. 654 - 681 (2019)
Highly Resolved Systems Biology to Dissect the Etioplast-to-Chloroplast Transition in Tobacco Leaves. Plant Physiology 18.
Journal Article
9 (6), 305 (2019)
Effect of Senescence Phenotypes and Nitrate Availability on Wheat Leaf Metabolome during Grain Filling. Agronomy 19.
Journal Article
116 (12), pp. 5665 - 5674 (2019)
Chloroplast competition is controlled by lipid biosynthesis in evening primroses. Proceedings of the National Academy of Sciences of the United States of America 20.
Journal Article
5 (5), pp. 525 - 538 (2019)
Control of retrograde signalling by protein import and cytosolic folding stress. Nature Plants 21.
Journal Article
176 (3), pp. 2251 - 2276 (2018)
Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs. Plant Physiology 22.
Journal Article
46 (16), pp. 8114 - 8132 (2018)
A genome-wide scan for correlated mutations detects macromolecular and chromatin interactions in Arabidopsis thaliana. Nucleic Acids Research 23.
Journal Article
16 (4), pp. 939 - 950 (2018)
Metabolite and transcript markers for the prediction of potato drought tolerance. Plant Biotechnology Journal 24.
Journal Article
10, 51 (2018)
Promising Metabolite Profiles in the Plasma and CSF of Early Clinical Parkinson's Disease. Frontiers in Aging Neuroscience 25.
Journal Article
12, 226 (2018)
Metabolomic Profiles for Primary Progressive Multiple Sclerosis Stratification and Disease Course Monitoring. Frontiers in Human Neuroscience 26.
Journal Article
8, 2048 (2017)
Characterization of the Wheat Leaf Metabolome during Grain Filling and under Varied N-Supply. Frontiers in Plant Science 27.
Journal Article
85 (1), pp. 78 - 92 (2017)
Towards understanding the crosstalk between protein post-translational modifications: Homo- and heterotypic PTM pair distances on protein surfaces are not random. Proteins: Structure, Function, and Bioinformatics 28.
Journal Article
91 (2), pp. 251 - 262 (2017)
Chlorosis caused by two recessively interacting genes reveals a role of RNA helicase in hybrid breakdown in Arabidopsis thaliana. The Plant Journal 29.
Journal Article
8, 1831 (2017)
Metabolic Pathway Assignment of Plant Genes based on Phylogenetic Profiling-A Feasibility Study. Frontiers in Plant Science 30.
Journal Article
84 (5), pp. 565 - 579 (2016)
Spatial proximity statistics suggest a regulatory role of protein phosphorylation on compound binding. Proteins-Structure Function and Bioinformatics 31.
Journal Article
2 (4), 16040 (2016)
Mobile RNAs convey the message. Nature Plants 32.
Journal Article
The Identification of Cis-Regulatory Sequence Motifs in Gene Promoters Based on SNP Information. PLANT SYNTHETIC PROMOTERS: METHODS AND PROTOCOLS, pp. 31 - 47 (2016)
33.
Journal Article
17, 185 (2016)
The orientation of transcription factor binding site motifs in gene promoter regions: does it matter? BMC Genomics 34.
Journal Article
39 (11), pp. 2370 - 2389 (2016)
The drought response of potato reference cultivars with contrasting tolerance. Plant Cell Environment 35.
Journal Article
28 (6), pp. 1237 - 1249 (2016)
tRNA-Related Sequences Trigger Systemic mRNA Transport in Plants. Plant Cell 36.
Journal Article
11 (6), pp. 1587 - 1597 (2015)
COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access. Metabolomics 37.
Journal Article
1, 15025 (2015)
Endogenous Arabidopsis messenger RNAs transported to distant tissues. Nature Plants 38.
Journal Article
11 (2), e1004049 (2015)
The Roles of Post-translational Modifications in the Context of Protein Interaction Networks. PLoS Computational Biology 39.
Journal Article
1306, pp. 177 - 194 (2015)
Computational phosphorylation network reconstruction: methods and resources. Methods in Molecular Biology 40.
Journal Article
2, 51 (2015)
Physicochemical characteristics of structurally determined metabolite-protein and drug-protein binding events with respect to binding specificity. Frontiers in molecular biosciences 41.
Journal Article
15, 137 (2015)
Substantial reprogramming of the Eutrema salsugineum (Thellungiella salsuginea) transcriptome in response to UV and silver nitrate challenge. BMC Plant Biology 42.
Journal Article
42 (7), pp. 655 - 667 (2015)
Assessment of drought tolerance and its potential yield penalty in potato. Functional Plant Biology 43.
Journal Article
10 (3), p. e0120533 - e0120533 (2015)
Multiple RNA Processing Defects and Impaired Chloroplast Function in Plants Deficient in the Organellar Protein-Only RNase P Enzyme. PLoS One 44.
Journal Article
164 (1), pp. 181 - 200 (2014)
Characterization and Identification of cis-Regulatory Elements in Arabidopsis Based on Single-Nucleotide Polymorphism Information. Plant Physiology 45.
Journal Article
26 (6), pp. 2367 - 2389 (2014)
Meta-Analysis of Arabidopsis thaliana Phospho-Proteomics Data Reveals Compartmentalization of Phosphorylation Motifs. Plant Cell 46.
Journal Article
65 (4), pp. 1051 - 1068 (2014)
The sucrose–trehalose 6-phosphate (Tre6P) nexus: specificity and mechanisms of sucrose signalling by Tre6P. Journal of Experimental Botany 47.
Journal Article
4, 540 (2013)
Reconstruction and analysis of nutrient-induced phosphorylation networks in Arabidopsis thaliana. Frontiers in Plant Science 48.
Journal Article
3 (1), pp. 1 - 23 (2013)
The Metabolic Interplay between Plants and Phytopathogens. Metabolites 49.
Journal Article
39 (10-11), pp. 948 - 957 (2012)
Data management pipeline for plant phenotyping in a multisite project. Functional Plant Biology 50.
Journal Article
158 (4), pp. 1534 - 1541 (2012)
Matapax: An Online High-Throughput Genome-Wide Association Study Pipeline. Plant Physiology