Publications of the Group

Ainsworth, E. A.; Beier, C.; Calfapietra, C.; Ceulemans, R.; Durand-Tardif, M.; Farquhar, G. D.; Godbold, D. L.; Hendrey, G. R.; Hickler, T.; Kaduk, J. et al.; Karnosky, D. F.; Kimball, B. A.; Koerner, C.; Koornneef, M.; Lafarge, T.; Leakey, A. D. B.; Lewin, K. F.; Long, S. P.; Manderscheid, R.; Mcneil, D. L.; Mies, T. A.; Miglietta, F.; Morgan, J. A.; Nagy, J.; Norby, R. J.; Norton, R. M.; Percy, K. E.; Rogers, A.; Soussana, J. F.; Stitt, M.; Weigel, H. J.; White, J. W.: Next generation of elevated [CO2] experiments with crops: a critical investment for feeding the future world. Plant, Cell and Environment 31 (9), pp. 1317 - 1324 (2008)

Bieniawska, Z.; Espinoza, C.; Schlereth, A.; Sulpice, R.; Hincha, D. K.; Hannah, M. A.: Disruption of the Arabidopsis circadian clock is responsible for extensive variation in the cold-responsive transcriptome. Plant Physiology 147 (1), pp. 263 - 279 (2008)

Chincinska, I. A.; Liesche, J.; Krugel, U.; Michalska, J.; Geigenberger, P.; Grimm, B.; Kuhn, C.: Sucrose transporter StSUT4 from potato affects flowering, tuberization, and shade avoidance response. Plant Physiology 146 (2), pp. 515 - 528 (2008)

Crowhurst, R. N.; Gleave, A. P.; MacRae, E. A.; Ampomah-Dwamena, C.; Atkinson, R. G.; Beuning, L. L.; Bulley, S. M.; Chagne, D.; Marsh, K. B.; Matich, A. J. et al.; Montefiori, M.; Newcomb, R. D.; Schaffer, R. J.; Usadel, B.; Allan, A. C.; Boldingh, H. L.; Bowen, J. H.; Davy, M. W.; Eckloff, R.; Ferguson, A. R.; Fraser, L. G.; Gera, E.; Hellens, R. P.; Janssen, B. J.; Klages, K.; Lo, K. R.; MacDiarmid, R. M.; Nain, B.; McNeilage, M. A.; Rassam, M.; Richardson, A. C.; Rikkerink, E. H. A.; Ross, G. S.; Schroeder, R.; Snowden, K. C.; Souleyre, E. J. F.; Templeton, M. D.; Walton, E. F.; Wang, D.; Wang, M. Y.; Wang, Y. Y.; Wood, M.; Wu, R. M.; Yauk, Y. K.; Laing, W. A.: Analysis of expressed sequence tags from Actinidia: Applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening. BMC Genomics 9, p. 351 (2008)

Doehlemann, G.; Wahl, R.; Horst, R. J.; Voll, L. M.; Usadel, B.; Poree, F.; Stitt, M.; Pons-Kuhnemann, J.; Sonnewald, U.; Kahmann, R. et al.; Kamper, J.: Reprogramming a maize plant: transcriptional and metabolic changes induced by the fungal biotroph Ustilago maydis. Plant Journal 56 (2), pp. 181 - 195 (2008)

Ensminger, I.; Schmidt, L.; Lloyd, J.: Soil temperature and intermittent frost modulate the rate of recovery of photosynthesis in Scots pine under simulated spring conditions. New Phytologist 177 (2), pp. 428 - 442 (2008)

Grigston, J. C.; Osuna, D.; Scheible, W.-R.; Liu, C.; Stitt, M.; Jones, A. M.: D-Glucose sensing by a plasma membrane regulator of G signaling protein, AtRGS1. FEBS Letters 582 (25-26), pp. 3577 - 3584 (2008)

Hoehenwarter, W.; van Dongen, J. T.; Wienkoop, S.; Steinfath, M.; Hummel, J.; Erban, A.; Sulpice, R.; Regierer, B.; Kopka, J.; Geigenberger, P. et al.; Weckwerth, W.: A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment. Proteomics 8 (20), pp. 4214 - 4225 (2008)

Kakar, K.; Wandrey, M.; Czechowski, T.; Gaertner, T.; Scheible, W.-R.; Stitt, M.; Torres-Jerez, I.; Xiao, Y.; Redman, J. C.; Wu, H. C. et al.; Cheung, F.; Town, C. D.; Udvardi, M. K.: A community resource for high-throughput quantitative RT-PCR analysis of transcription factor gene expression in Medicago truncatula. Plant Methods 4, p. 18 (2008)

Keurentjes, J. J. B.; Sulpice, R.; Gibon, Y.; Steinhauser, M.-C.; Fu, J. Y.; Koornneef, M.; Stitt, M.; Vreugdenhil, D.: Integrative analyses of genetic variation in enzyme activities of primary carbohydrate metabolism reveal distinct modes of regulation in Arabidopsis thaliana. Genome Biology 9 (8), p. R129 (2008)

Leboeuf, E.; Immerzeel, P.; Gibon, Y.; Steup, M.; Pauly, M.: High-throughput functional assessment of polysaccharide-active enzymes using matrix-assisted laser desorption/ionization-time-of-flight mass spectrometry as exemplified on plant cell wall polysaccharides. Analytical Biochemistry 373 (1), pp. 9 - 17 (2008)

Lehmann, U.; Wienkoop, S.; Tschoep, H.; Weckwerth, W.: If the antibody fails - a mass Western approach. The Plant Journal 55 (6), pp. 1039 - 1046 (2008)

Lein, W.; Usadel, B.; Stitt, M.; Reindl, A.; Ehrhardt, T.; Sonnewald, U.; Boernke, F.: Large-scale phenotyping of transgenic tobacco plants (Nicotiana tabacum) to identify essential leaf functions. Plant Biotechnology Journal 6 (3), pp. 246 - 263 (2008)

Lejay, L.; Wirth, J.; Pervent, M.; Cross, J. M. F.; Tillard, P.; Gojon, A.: Oxidative pentose phosphate pathway-dependent sugar sensing as a mechanism for regulation of root ion transporters by photosynthesis. Plant Physiology 146 (4), pp. 2036 - 2053 (2008)

Lohse, M.; Krueger, P.; Hannemann, J.; Nagel, A.; Stitt, M.; Walther, D.; Usadel, B.: Robin - Microarray Experimentanalyse leicht gemacht. GenomXPress: Informationen aus der Deutschen Genomforschung 3, pp. 16 - 17 (2008)

May, P.; Wienkoop, S.; Kempa, S.; Usadel, B.; Christian, N.; Rupprecht, J.; Weiss, J.; Recuenco-Munoz, L.; Ebenhoeh, O.; Weckwerth, W. et al.; Walther, D.: Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii. Genetics 179 (1), pp. 157 - 166 (2008)

Nunes-Nesi, A.; Sulpice, R.; Gibon, Y.; Fernie, A. R.: The enigmatic contribution of mitochondrial function in photosynthesis. Journal of Experimental Botany 59 (7), pp. 1675 - 1684 (2008)

Oliver, S. N.; Lunn, J. E.; Urbanczyk-Wochniak, E.; Lytovchenko, A.; van Dongen, J. T.; Faix, B.; Schmalzlin, E.; Fernie, A. R.; Geigenberger, P.: Decreased Expression of Cytosolic Pyruvate Kinase in Potato Tubers Leads to a Decline in Pyruvate Resulting in an in Vivo Repression of the Alternative Oxidase. Plant Physiology 148 (3), pp. 1640 - 1654 (2008)

Rautengarten, C.; Usadel, B.; Neumetzler, L.; Hartmann, J.; Buessis, D.; Altmann, T.: A subtilisin-like serine protease essential for mucilage release from Arabidopsis seed coats. Plant Journal 54 (3), pp. 466 - 480 (2008)

Sienkiewicz-Porzucek, A.; Nunes-Nesi, A.; Sulpice, R.; Lisec, J.; Centeno, D. C.; Carillo, P.; Leisse, A.; Urbanczyk-Wochniak, E.; Fernie, A. R.: Mild reductions in mitochondrial citrate synthase activity result in a compromised nitrate assimilation and reduced leaf pigmentation but have no effect on photosynthetic performance or growth. Plant Physiology 147 (1), pp. 115 - 127 (2008)

Sreenivasulu, N.; Usadel, B.; Winter, A.; Radchuk, V.; Scholz, U.; Stein, N.; Weschke, W.; Strickert, M.; Close, T. J.; Stitt, M. et al.; Graner, A.; Wobus, U.: Barley grain maturation and germination: Metabolic pathway and regulatory network commonalities and differences highlighted by new MapMan/PageMan profiling tools. Plant Physiology 146 (4), pp. 1738 - 1758 (2008)

Usadel, B.; Blaesing, O. E.; Gibon, Y.; Retzlaff, K.; Hoehne, M.; Guenther, M.; Stitt, M.: Global transcript levels respond to small changes of the carbon status during progressive exhaustion of carbohydrates in Arabidopsis rosettes. Plant Physiology 146 (4), pp. 1834 - 1861 (2008)

Verdier, J.; Kakar, K.; Gallardo, K.; Le Signor, C.; Aubert, G.; Schlereth, A.; Town, C. D.; Udvardi, M. K.; Thompson, R. D.: Gene expression profiling of M-truncatula transcription factors identifies putative regulators of grain legume seed filling. Plant Molecular Biology 67 (6), pp. 567 - 580 (2008)

Lunn, J.: Sucrose metabolism. In: Encyclopedia of Life Science. Wiley & Sons, Chichester, UK (2008)

Steinhauser, D.; Krall, L.; Müssig, C.; Büssis, D.; Usadel, B.: Correlation Networks. In: Analysis of Biological Networks, 13 (Eds. Junker, B. H.; Schreiber, F.; Zomaya, A. Y.). Wiley (2008)

Usadel, B.; Blaesing, O. E.; Gibon, Y.; Poree, F.; Hoehne, M.; Guenter, M.; Trethewey, R.; Kamlage, B.; Poorter, H.; Stitt, M.: Multilevel genomic analysis of the response of transcripts, enzyme activities and metabolites in Arabidopsis rosettes to a progressive decrease of temperature in the non-freezing range. (2008)

Wilkinson, M. D.; Senger, M.; Kawas, E.; Bruskiewich, R.; Gouzy, J.; Noirot, C.; Bardou, P.; Ng, A.; Haase, D.; Saiz, E. D. et al.; Wang, D.; Gibbons, F.; Gordon, P. M. K.; Sensen, C. W.; Carrasco, J. M. R.; Fernandez, J. M.; Shen, L.; Links, M.; Ng, M.; Opushneva, N.; Neerincx, P. B. T.; Leunissen, J. A. M.; Ernst, R.; Twigger, S.; Usadel, B.; Good, B.; Wong, Y.; Stein, L.; Crosby, W.; Karlsson, J.; Royo, R.; Parraga, I.; Ramirez, S.; Gelpi, J. L.; Trelles, O.; Pisano, D. G.; Jimenez, N.; Kerhornou, A.; Rosset, R.; Zamacola, L.; Tarraga, J.; Huerta-Cepas, J.; Carazo, J. M.; Dopazo, J.; Guigo, R.; Navarro, A.; Orozco, M.; Valencia, A.; Claros, M. G.; Perez, A. J.; Aldana, J.; Rojano, M. M.; Cruz, R. F. S.; Navas, I.; Schiltz, G.; Farmer, A.; Gessler, D.; Schoof, H.; Groscurth, A.; Consortium, B.: Interoperability with Moby 1.0 - Its better than sharing your toothbrush. (2008)