Publications of the Group

Blaesing, O. E.; Gibon, Y.; Guenther, M.; Hoehne, M.; Morcuende, R.; Osuna, D.; Thimm, O.; Usadel, B.; Scheible, W.-R.; Stitt, M.: Sugars and circadian regulation make major contributions to the global regulation of diurnal gene expression in Arabidopsis. Plant Cell 17 (12), pp. 3257 - 3281 (2005)

Carrari, F.; Coll-Garcia, D.; Schauer, N.; Lytovchenko, A.; Palacios-Rojas, N.; Balbo, I.; Rosso, M.; Fernie, A. R.: Deficiency of a plastidial adenylate kinase in Arabidopsis results in elevated photosynthetic amino acid biosynthesis and enhanced growth. Plant Physiology 137 (1), pp. 70 - 82 (2005)

Czechowski, T.; Stitt, M.; Altmann, T.; Udvardi, M. K.; Scheible, W.-R.: Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiology 139 (1), pp. 5 - 17 (2005)

Fernie, A. R.; Geigenberger, P.; Stitt, M.: Flux an important, but neglected, component of functional glenomics. Current Opinion in Plant Biology 8 (2), pp. 174 - 182 (2005)

Fieulaine, S.; Lunn, J. E.; Borel, F.; Ferrer, J. L.: The structure of a cyanobacterial sucrose-phosphatase reveals the sugar tongs that release free sucrose in the cell. Plant Cell 17 (7), pp. 2049 - 2058 (2005)

Kanter, U.; Usadel, B.; Guerineau, F.; Li, Y.; Pauly, M.; Tenhaken, R.: The inositol oxygenase gene family of Arabidopsis is involved in the biosynthesis of nucleotide sugar precursors for cell-wall matrix polysaccharides. Planta 221 (2), pp. 243 - 254 (2005)

Kopka, J.; Schauer, N.; Krueger, S.; Birkemeyer, C.; Usadel, B.; Bergmueller, E.; Doermann, P.; Weckwerth, W.; Gibon, Y.; Stitt, M. et al.; Willmitzer, L.; Fernie, A. R.; Steinhauser, D.: GMD@CSB.DB: the Golm Metabolome Database. Bioinformatics 21 (8), pp. 1635 - 1638 (2005)

Repsilber, D.; Fink, L.; Jacobsen, M.; Blasing, O.; Ziegler, A.: Sample selection for microarray gene expression studies. Methods of Information in Medicine 44 (3), pp. 461 - 467 (2005)

Studart-Guimaraes, C.; Gibon, Y.; Frankel, N.; Wood, C. C.; Zanor, M. I.; Fernie, A. R.; Carrari, F.: Identification and characterisation of the alpha and beta subunits of succinyl CoA ligase of tomato. Plant Molecular Biology 59 (5), pp. 781 - 791 (2005)

Usadel, B.; Kuschinsky, A. M.; Steinhauser, D.; Pauly, M.: Transcriptional co-response analysis as a tool to identify new components of the wall biosynthetic machinery. Plant Biosystems 139 (1), pp. 69 - 73 (2005)

Harmer, S.; Covington, M.; Blaesing, O. E.; Stitt, M.: Circadian regulation of global gene expression and metabolism. In: Endogenous Plant Rhythms., pp. 133 - 166 (Eds. Hall, A. J. W.; McWaters, H. G.). Blackwell Publ., Oxford, UK (2005)

Thimm, O.; Blaesing, O.; Usadel, B.; Gibon, Y.: Evaluation of the transcriptome and genome to inform the study of metabolic control in plants. In: Advances in Plant Research - Control of Primary Metabolism in Plants (Eds. Plaxton, W.; MacManus, M.). Blackwell Publ., Oxford, UK (2005)

Fluck, J.; Stitt, M.; Selbig, J.; Hofmann, M.; Thimm, O.: Using named entity recognition for ontology annotation: An experimental approach for Arabidopsis functional genome annotation. In: ECCB'05 Workshop on Biomedical Ontologies and Text Processing. ECCB'05 Workshop on Biomedical Ontologies and Text Processing, Madrid, ESP. (2005)

Stitt, M.: Multilevel genomics analysis of carbon-nutrient interactions in arabidopsis. In FEBS Journal, 272, p. 460 - 460. (2005)

Usadel, B.; Nagel, A.; Thimm, O.; Redestig, H.; Bläsing, O. E.; Palacios-Rojas, N.; Selbig, J.; Hannemann, J.; Piques, M. C.; Steinhauser, D. et al.; Scheible, W.-R.; Gibon, Y.; Morcuende, R.; Weicht, D.; Meyer, S.; Stitt, M.: Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of coresponding genes, and comparison with known responses. Plant Physiology 138 (3), pp. 1195 - 1204 (2005)