Urbanczyk-Wochniak, E.; Willmitzer, L.; Fernie, A. R.: Integrating profiling data: using linear correlation to reveal coregulation of transcript and metabolites. In: Metabolomics: Methods and Protocols, pp. 77 - 85 (Ed. Weckwerth, W.). Humana Press Inc., Totowa, NJ, USA (2007)

Carrari, F.; Schauer, N.; Willmitzer, L.; Fernie, A. R.: Systems biology: A renaissance of the Top-down approach for plant analysis. In: Plant Metabolomics, pp. 185 - 198 (Eds. Nagata, T.; Lörz, H.; Widholm, J. M.). Springer-Verlag, Heidelberg, GER (2006)

Geigenberger, P.; Fernie, A. R.: Starch biosynthesis in the potato tuber. In: Food Biochemistry and Food Processing, pp. 253 - 270 (Eds. Hui, Y. H.; Corke, H.; DeLeyn, I.; Nip, W.-K.; Cross, N.). Blackwell Publ., Ames, IA, USA (2006)

Lytovchenko, A.; Geigenberger, P.; Willmitzer, L.; Fernie, A. R.: Starch content in plant tissues. In: Plant Genetic Engineering: Improving the Nutritional & Therapeutic Qualities of Plants, pp. 1 - 29 (Ed. Jaiwal, P. K.). Studium Press LLC, Houston, TX, USA (2006)

Fernie, A. R.; Sweetlove, L. J.: Broad range metabolite analysis: integration into genomics programs. In: Experimental standardization of classification of enzyme characteristics (Eds. Ketner, C.; Hicks, M. G.) (2004)

Fernie, A. R.; Willmitzer, L.: Carbohydrate metabolism. In: The handbook of Plant Biotechnology (Eds. Christou, P.; Klee, H. K.). Wiley, Chichester, UK (2004)

Urbanczyk-Wochniak, E.; Fernie, A. R.; Willmitzer, L.: The utility of transcriptomics and metabolomics in systems based analysis of plant metabolism. In: Understanding the Plant Genome. (Ed. Sadowski, J.). Institute of Plant Genetics, PAS, Poznan, POL (2004)

Fernie, A. R.; Roessner, U.; Willmitzer, L.: Metabolic Profiling of Plant Cells. In: Plant Physiology 3rd Edition (Eds. Taiz, L.; Zeiger, E.). Sinauer Associates, Inc., Sunderland, MA, USA (2001)

Hesse, H.; Harms, K.; von Ballmoos, P.; Brunold, C.; Willmitzer, L.; Hoefgen, R.: Serine acetyltransferase: A bottleneck for cysteine and glutathione syntheses? In: Sulfur Nutrition and Sulfur Assimilation in Higher Plants: molecular, biochemical and physiological aspects, pp. 321 - 323 (Ed. Brunold, C.). Paul Haupt Berne, Berne, SUI (2000)

Hesse, H.; K., H.; Klonus, D.; von Ballmoos, P.; Brunold, C.; Willmitzer, L.; Hoefgen, R.: Molecular engineering of sulfur assimilation in Higher Plants. In: Plant Sulfur Research in Europe, Landbauforschung Völkenrode, Vol. 218 (Sonderheft), pp. 55 - 59 (2000)

Herde, O.; Willmitzer, L.; Fisahn, J.: Exogenous electrical stimulation of tomato plants: Induction of proteinase inhibitor II gene expression and control of photosynthetic activity. In: Photosynthesis, Proceedings of the meeting, pp. 1 - 5 (Ed. Garab, G.). Kluwer Academic Publ., Budapest, HUN (1998)

Riesmeier, J. W.; Rink, U.; Laloi, M.; Leggewie, G.; Kwart, M.; Tretheway, R.; Kossmann, J.; Willmitzer, L.: The physiological role and regulation of photoassimilate and nutrient transport across biomembranes with special emphasis on transgenic potato plants. In: Regulation and Manipulation of Starch and Sucrose Metabolism in Plants, pp. 71 - 74 (Ed. Nakamura, Y.) (1996)

Kossmann, J.; Abel, G.; Buettcher, V.; Duwenig, E.; Emmermann, M.; Lorberth, R.; Springer, F.; Virgin, I.; Welsh, T.; Willmitzer, L.: Transgenic plants as a tool to understand starch biosynthesis. In: Carbohydrate Bioengineering, pp. 271 - 278 (Eds. Petersen, S. B.; Svensson, B.; Pedersen, S.). Elsevier Science B. V., Amsterdam, NED (1995)

Pick, T. R.; Brautigam, A.; Schulz, M. A.; Obata, T.; Fernie, A. R.; Weber, A. P.: PLGG1, a plastidic glycolate glycerate transporter, is required for photorespiration and defines a unique class of metabolite transporters. Proceedings of the National Academy of Sciences of the United States of America 110, pp. 3185 - 3190 (2013)

Araujo, W. L.; Trofimova, L.; Yu, K.; Steinhauser, D.; Krall, L.; Fernie, A. R.; Bunik, V. I.: On the role of the mitochondrial 2-oxoglutarate dehydrogenase complex in the amino acid metabolism. Amino Acids 41, p. S39 - S39 (2011)

Urbanczyk-Wochniak, E.; Baxter, C.; Sweetlove, L. J.; Fernie, A. R.: Profiling diurnal changes in metabolite and transcript levels in potato leaves. In: 3rd International Congress on Plant Metabolomics, pp. 183 - 192. 3rd International Congress on Plant Metabolomics, Iowa State Univ, Ames, IA. (2007)

Willmitzer, L.; Caldana, C.; Fernie, A. R.; Giavalisco, P.; MA, H.; Redestig, H.; Steinhauser, D.: Integrative Analysis of Transcriptome and Metabolome Data. In: Proceedings of the German Conference on Bioinformatics, Vol. 01. Proceedings of the German Conference on Bioinformatics, GCB 2007, Potsdam, Germany, September 26, 2007 - September 28, 2007. (2007)

Nunes-Nesi, A.; Carrari, F.; Lytovchenko, A.; Fernie, A. R.: Enhancing crop yield in Solanaceous species through the genetic manipulation of energy metabolism. In: BioScience 2005 Conference, pp. 1430 - 1434. BioScience 2005 Conference, Glasgow, SCOTLAND. (2005)

Fernie, A. R.; Riesmeire, J. W.; Martiny, A.; Ramalingam, S.; Willmitzer, L.; Trethewey, R. N.: Consequences of the expression of a bacterial glucokinase in potato tubers, both in combination with and independently of a yeast-derived invertase. In: Australian Journal of Plant Physiology, pp. 827 - 833. Australian Journal of Plant Physiology. (2000)

Hajirezaei, M.-R.; Takahata, Y.; Trethewey, R. N.; Willmitzer, L.; Sonnewald, U.: Impact of elevated cytosolic and apoplastic invertase activity on carbon metabolism during potato tuber development. In: Journal of Experimental Botany, pp. 439 - 445. Journal of Experimental Botany. (2000)

Kossmann, J.; Lloyd, J.; Riesmeier, J.; Willmitzer, L.: Engineering carbohydrate metabolism in transgenic plants. In: Plant Biotechnology and in Vitro Biology in the 21st Century, pp. 579 - 582. Plant Biotechnology and in Vitro Biology in the 21st Century. (1999)

Trethewey, R. N.; Willmitzer, L.: The application of transgenic technology to the study of sink metabolism in potato. In: International Conference on Regulation of Primary Metabolic Pathways in Plants, pp. 239 - 256. International Conference on Regulation of Primary Metabolic Pathways in Plants, ST HUGHS COLL, OXFORD, ENGLAND. (1999)

Muschak, M.; Willmitzer, L.; Fisahn, J.: Gas exchange and environmental parameters at FBPase antisense potatoes. In: XIth International Congress on Photosynthesis - Mechanisms and Effects, pp. 3475 - 3478 (Ed. Garab, G.). XIth International Congress on Photosynthesis - Mechanisms and Effects, Budapest, Hungary. Kluwer Academic Pub (1998)

Riesmeier, J.; Kossmann, J.; Trethewey, R.; Heyer, A. G.; Landschuetze, V.; Willmitzer, L.: Production of novel polymers in transgenic plants. In: Symposium H on Biodegradable Polymers and Macromolecules, at the E-MRS 97/ICAM 97 Conference, pp. 383 - 386. Symposium H on Biodegradable Polymers and Macromolecules, at the E-MRS 97/ICAM 97 Conference, STRASBOURG, FRANCE. (1998)

Kossmann, J.; Buettcher, V.; Abel, G. J. W.; Duwenig, E.; Emmermann, M.; Frohberg, C.; Lloyd, J. R.; Lorberth, R.; Springer, F.; Welsh, T. et al.; Willmitzer, L.: Starch biosynthesis and modification of starch structure in transgenic plants. In: Macromolecular Symposia, pp. 29 - 38. Macromolecular Symposia. (1997)

Muschak, M.; Hoffmann-Benning, S.; Fuss, H.; Kossmann, J.; Willmitzer, L.; Fisahn, J.: Gas exchange and ultrastructural analysis of transgenic potato plants expressing mRNA antisense construct targeted to the cp-fructose-1,6-bisphosphate phosphatase. In: 9th Workshop on Photosynthesis, pp. 455 - 465. 9th Workshop on Photosynthesis, WUSTERHAUSEN, GERMANY. (1997)

Fisahn, J.; Rehm, J.; Riesmeier, J.; Kossmann, J.; Willmitzer, L.: Regulation of photosynthetic activity and of stomatal aperture by the chloroplastic fructose bisphosphatase and by a sucrose transport protein involved in phloem loading. In: Xth International Photosynthesis Congress, pp. 641 - 646 (Ed. Mathis, P.). Xth International Photosynthesis Congress, MONTPELLIER, FRANCE. Kluwer Academic Pub (1995)

Kossmann, J.; Mueller-Roeber, B.; Riesmeier, J.; Frommer, W. B.; Sonnewald, U.; Willmitzer, L.: Transgenic plants as a tool to analyze carbohydrate metabolism. In: Sucrose Metabolism, Biochemistry, Physiology and Molecular Biology, pp. 100 - 106. Sucrose Metabolism, Biochemistry, Physiology and Molecular Biology. (1995)

Hincha, D. K.; Schulz, E.; Thalhammer, A.; Tohge, T.; Sulpice, R.; Fernie, A. R.; Zuther, E.: The Role of Secondary Metabolites and COR Proteins in Plant Freezing Tolerance. In In Vitro Cellular & Developmental Biology-Animal, 50, p. S13 - S13. Tissue Culture Association, Columbia, MD (2014)

van der Merwe, M. J.; Osorio, S.; Moritz, T.; Nunes-Nesi, A.; Fernie, A. R.: The role and regulation of the tricarboxylic acid cycle in Solanum lycopersicum roots. In South African Journal of Botany, 75 (2), p. 424 - 424. (2009)

Nunes-Nesi, A.: Upregulation of photosynthetic performance and growth as a consequence of a decreased TCA cycle enzymes activity in genetic manipulated tomato plants. In Photosynthesis Research, 91 (2-3), pp. 247 - 248. (2007)

Carrari, F.; Fernie, A. R.: Characterizing the metabolic regulation that underlies tomato fruit development. In Comparative Biochemistry and Physiology a-Molecular & Integrative Physiology, 141 (3), p. S297 - S297. (2005)

Ishizaki, K.; Larson, T. A.; Schauer, N.; Fernie, A. R.; Graham, I. A.; Leaver, C. J.: The critical role of Arabidopsis electron-transfer flavoprotein:ubiquinone oxidoreductase during dark-induced starvation. In Plant Cell, 17 (9), pp. 2587 - 2600. (2005)

Urbanczyk-Wochniak, E.; Willmitzer, L.; Fernie, A. R.: mRNA Analysis of Plant Metabolic Regulation: Comparison of Transcript and Metabolic Complements of Developing Plant Tissues. In Acta Physiologiae Plantarum, 26 (3), p. 55 - 55. (2004)

Hoffmann-Benning, S.; Wegener, C.; Willmitzer, L.; Fisahn, J.: The role of the cell wall for growth and development in transgenic plants overexpressing pectin methylesterase and pectate lyase. In Plant Physiology, 114 (3), p. 100 - 100. (1997)

Muschak, M.; Pachepsky, L. B.; Willmitzer, L.; Fisahn, J.: The influence of stomatal density on leaf gas exchange. In Plant Physiology, 114 (3), p. 218 - 218. (1997)

Willmitzer, L.: Transgenic plants altered in carbohydrate metabolism: Biochemical and molecular analysis. In Faseb Journal, 11 (9), p. A868 - A868. (1997)

Duwenig, E.; Steup, M.; Willmitzer, L.; Kossmann, J.: Role of starch phosphorylase in potato: The functional analysis of an enigmatic enzyme. In Plant Physiology, 111 (2), p. 92 - 92. (1996)

Hoffmann-Benning, S.; Wegener, C.; Willmitzer, L.; Fisahn, J.: Use of transgenic plants to analyse the role of pectin components during growth. In Plant Physiology, 111 (2), p. 136 - 136. (1996)

Muschak, M.; Willmitzer, L.; Fisahn, J.: cp-FBPase antisense potatoes exhibited reduced levels in ABA. In Plant Physiology, 111 (2), p. 24 - 24. (1996)

Trethewey, R.; Geigenberger, P.; Hajirezaei, M.-R.; Riesmeier, J. W.; Sonnewald, U.; Stitt, M.; Willmitzer, L.: Glucokinase activity in potato tubers: A key step for the regulation of metabolism. In Plant Physiology, 111 (2), p. 798 - 798. (1996)

Fernie, A. R.: Interview with Alisdair R. Fernie. (2014)

Fernie, A. R.; Aharoni, A.; Willmitzer, L.; Stitt, M.; Tohge, T.; Kopka, J.; Carroll, A. J.; Saito, K.; Fraser, P. D.; DeLuca, V.: Recommendations for Reporting Metabolite Data, The Plant Cell 23, pp. 2477 - 2482 (2011)

Fernie, A. R.; Hashida, S.-N.; Yoshimura, K.; Gakière, B.; Mou, Z.; Pétriacq, P.: Editorial: NAD Metabolism and Signaling in Plants. Frontiers in Plant Science 11, 146 (2020)

Fernie, A. R.; Wen, W.: Editorial overview: Evolution of metabolic diversity. Current Opinion in Plant Biology 55, pp. A1 - A4 (2020)

Fernie, A. R.: Seeing is believing: the three-way division of labor in the photosynthetic thylakoid membrane. The Plant Journal 97 (3), pp. 410 - 411 (2019)

Fernie, A. R.: Making sense of the complex role of the mitochondria in mediating the plant touch response. The Plant Journal 97 (4), pp. 621 - 622 (2019)

Fernie, A. R.; Sweetlove, L.: The Plant Journal actively supports Open Science and data transparency. The Plant Journal 97 (3), p. 409 - 409 (2019)

Sweetlove, L. J.; Aharoni, A.; Fernie, A. R.: Introducing TPJ Fellowships for early stage Principal Investigators. The Plant Journal 100 (3), p. 435 - 435 (2019)

Kopka, J.; Fernie, A. R.: Editorial overview: Plant synthetic and systems biology. Current Opinion in Biotechnology 49, pp. viii - xi (2018)