Pachepsky, L.B.; Muschak, M.; Acock, B.; Kossmann, J.; Blechschmidt-Schneider, S.; Willmitzer, L.; Fisahn, J.: Calculating leaf boundary layer parameters with the two dimensional model 2Dleaf comparing transpiration rates of wild type and transgenic potato plants. Biotronics 27, pp. 41 - 52 (1998)

Rehm, J.; Willmitzer, L.; Heyer, A. G.: Production of 1-kestose in transgenic yeast expressing a fructosyltransferase from Aspergillus foetidus. Journal of Bacteriology 180 (5), pp. 1305 - 1310 (1998)

Romanov, G. A.; Konstantinova, T. N.; Sergeeva, L. I.; Golyanovskaya, S. A.; Kossmann, J.; Willmitzer, L.; Schmuelling, T.; Aksenova, N. P.: Morphology and tuber formation of in-vitro grown potato plants harboring the yeast invertase gene and/or the rolC gene. Plant Cell Reports 18 (3-4), pp. 318 - 324 (1998)

Trethewey, R. N.; Geigenberger, P.; Riedel, K.; Hajirezaei, M.-R.; Sonnewald, U.; Stitt, M.; Riesmeier, J. W.; Willmitzer, L.: Combined expression of glucokinase and invertase in potato tubers leads to a dramatic reduction in starch accumulation and a stimulation of glycolysis. Plant Journal 15 (1), pp. 109 - 118 (1998)

Buessis, D.; Heineke, D.; Sonnewald, U.; Willmitzer, L.; Raschke, K.; Heldt, H.-W.: Solute accumulation and decreased photosynthesis in leaves of potato plants expressing yeast-derived invertase either in the apoplast, vacuole or cytosol. Planta 202 (1), pp. 126 - 136 (1997)

Duwenig, E.; Steup, M.; Willmitzer, L.; Kossmann, J.: Antisense inhibition of cytosolic phosphorylase in potato plants (Solanum tuberosum L.) affects tuber sprouting and flower formation with only little impact on carbohydrate metabolism. Plant Journal 12 (2), pp. 323 - 333 (1997)

Hellwege, E. M.; Gritscher, D.; Willmitzer, L.; Heyer, A. G.: Transgenic potato tubers accumulate high levels of 1-kestose and nystose: functional identification of a sucrose sucrose 1-fructosyltransferase of artichoke (Cynara scolymus) blossom discs. Plant Journal 12 (5), pp. 1057 - 1065 (1997)

Herde, O.; Pena-Cortes, H.; Willmitzer, L.; Fisahn, J.: Stomatal responses to jasmonic acid, linolenic acid and abscisic acid in wild-type and ABA-deficient tomato plants. Plant Cell and Environment 20 (1), pp. 136 - 141 (1997)

Hoffmann-Benning, S.; Willmitzer, L.; Fisahn, J.: Analysis of growth, composition and thickness of the cell walls of transgenic tobacco plants expressing a yeast-derived invertase. Protoplasma 200 (3-4), pp. 146 - 153 (1997)

Leggewie, G.; Willmitzer, L.; Riesmeier, J. W.: Two cDNAs from potato are able to complement a phosphate uptake-deficient yeast mutant: Identification of phosphate transporters from higher plants. Plant Cell 9 (3), pp. 381 - 392 (1997)

Pachepsky, L. B.; Acock, B.; Hoffman-Benning, S.; Willmitzer, L.; Fisahn, J.: Estimation of the anatomical, stomatal and biochemical components of differences in photosynthesis and transpiration of wild-type and transgenic (expressing yeast-derived invertase targeted to the vacuole) tobacco leaves. Plant Cell and Environment 20 (8), pp. 1070 - 1078 (1997)

Sonnewald, U.; Hajirezaei, M.-R.; Kossmann, J.; Heyer, A. G.; Trethewey, R. N.; Willmitzer, L.: Increased potato tuber size resulting from apoplastic expression of a yeast invertase. Nature Biotechnology 15 (8), pp. 794 - 797 (1997)

Herde, O.; Atzorn, R.; Fisahn, J.; Wasternack, C.; Willmitzer, L.; Pena-Cortes, H.: Localized wounding by heat initiates the accumulation of proteinase inhibitor II in abscisic acid-deficient plants by triggering jasmonic acid biosynthesis. Plant Physiology 112 (2), pp. 853 - 860 (1996)

La Cognata, U.; Landschuetze, V.; Willmitzer, L.; Mueller-Roeber, B.: Structure and expression of mitochondrial citrate synthases from higher plants. Plant and Cell Physiology 37 (7), pp. 1022 - 1029 (1996)

Fernie, A. R.; Bauwe, H.; Weber, A. P.M. (Eds.): Photorespiration: Methods and Protocols. Humanapress, New York (2017), 274 pp.

Osorio, S.; Vallarino, J. G.: Metabolite Profiling in Plants. Wiley, New Jersey, NJ (2017), 11 pp.

Baginsky, S.; Fernie, A. R.: Plant Systems Biology. Birkhäuser Verlag, Basel, SUI (2007)

Allwood, J. W.; Gibon, Y.; Osorio, S.; Araújo, W. L.; Vallarino, J. G.; Pétriacq, P.; Moing, A.: Developmental metabolomics to decipher and improve fleshy fruit quality. In: Advances in Botanical Research, Vol. 98, pp. 3 - 34 (Eds. Pétriacq, P.; Bouchereau, A.). Academic Press (2021)

Alseekh, S.; Fernie, A. R.: Using Metabolomics to Assist Plant Breeding. In: Crop Breeding: Genetic Improvement Methods, Vol. 2264, pp. 33 - 46 (Ed. Tripodi, P.). Springer US, New York, NY (2021)

Bauwe, H.; Fernie, A. R.: With a Little Help from My Friends: The Central Role of Photorespiration and Related Metabolic Processes in the Acclimation and Adaptation of Plants to Oxygen and to Low-CO2 Stress. In: Photosynthesis, Respiration, and Climate Change, Vol. 48, pp. 355 - 385 (Eds. Becklin, K. M.; Ward, J. K.; Way, D. A.). Springer, Cham (2021)

Naake, T.; Gaquerel, E.; Fernie, A. R.: Annotation of Specialized Metabolites from High-Throughput and High Resolution Mass Spectrometry Metabolomics. In: Computational Methods and Data Analysis for Metabolomics, pp. 209 - 225 (Ed. Li, S.). Springer US, New York, NY (2020)

Llorente, C.; Jimenez, R.; Brotman, Y.; Fernie, A. R.; Sreenivasulu, N.; Jackie: Rice Grain Quality Benchmarking Through Profiling of Volatiles and Metabolites in Grains Using Gas Chromatography Mass Spectrometry. In: Rice Grain Quality: Methods and Protocols, Vol. 1892, pp. 187 - 199 (Ed. Sreenivasulu, N.). Springer New York, New York, NY (2019)

Alseekh, S.; Wu, S.; Brotman, Y.; Fernie, A. R.: Guidelines for Sample Normalization to Minimize Batch Variation for Large-Scale Metabolic Profiling of Plant Natural Genetic Variance. In: Methods in Molecular Biology, Vol. 1778, pp. 33 - 46 (Ed. António, C.). Humana Press, Clifton, N.J. (2018)

de Souza, L. P.; Fernie, A. R.; Tohge, T.: Carbon Atomic Survey for Identification of Selected Metabolic Fluxes. In: Methods in Molecular Biology, Vol. 1778, pp. 59 - 70 (Ed. António, C.). Humana Press, Clifton, N.J. (2018)

Vallarino, J. G.; Erban, A.; Fehrle, I.; Fernie, A. R.; Kopka, J.; Osorio, S.: Acquisition of Volatile Compounds by Gas Chromatography–Mass Spectrometry (GC-MS). In: Methods in Molecular Biology, Vol. 1778, pp. 225 - 240 (Ed. António, C.). Humana Press, Clifton, N.J. (2018)

Watanabe, M.; Tohge, T.; Balazadeh, S.; Erban, A.; Giavalisco, P.; Kopka, J.; Mueller-Roeber, B.; Fernie, A. R.; Hoefgen, R.: Comprehensive Metabolomics Studies of Plant Developmental Senescence. In: Plant Senescence: Methods and Protocols, pp. 339 - 358 (Ed. Guo, Y.). Springer New York, New York, NY (2018)

Arrivault, S.; Obata, T.: Quantification of photorespiratory intermediates by mass spectrometry-based approaches. In: Methods in Molecular Biology, Vol. 1653, pp. 97 - 104. Humana Press, Clifton, N.J. (2017)

de Souza, L. P.; Szecowka, M.; Fernie, A. R.; Tohge, T.: 13CO2 labeling and mass spectral analysis of photorespiration. In: Methods in Molecular Biology, Vol. 1653, pp. 157 - 166. Humana Press, Clifton, N.J. (2017)

Del-Saz, N.F.; Ribas-Carbo, M.; Martorell, G.; Fernie, A. R.; Florez-Sarasa, I. D.: Measurements of electron partitioning between cytochrome and alternative oxidase pathways in plant tissues. In: Methods in Molecular Biology, Vol. 1670, pp. 203 - 217. Humana Press, Clifton, N.J. (2017)

Fernie, A. R.; Bauwe, H.; Sweetlove, L.J.: Investigating the role of the photorespiratory pathway in non-photosynthetic tissues. In: Methods in Molecular Biology, Vol. 1653, pp. 217 - 225. Humana Press, Clifton, N.J. (2017)

Fernie, A. R.; Tohge, T.: The Genetics of Plant Metabolism. In: Annual Review of Genetics, Vol. 51, pp. 287 - 310. Annual Reviews, Palo Alto (2017)

Obata, T.; Rosado-Souza, L.; Fernie, A. R.: Coupling radiotracer experiments with chemical fractionation for the estimation of respiratory fluxes. In: Methods in Molecular Biology, Vol. 1670, pp. 17 - 30. Humana Press, Clifton, N.J. (2017)

Omena-Garcia, R.P.; Araújo, W.L.; Gibon, Y.; Fernie, A. R.; Nunes-Nesi, A.: Measurement of tricarboxylic acid cycle enzyme activities in plants. In: Methods in Molecular Biology, Vol. 1670, pp. 167 - 182. Springer, New York, NY (2017)

Vallarino, J. G.; Osorio, S.: Technological Advances in Studies of Plant Adaptation. In: Molecular Mechanisms in Plant Adaptation, pp. 1 - 30. Wiley-Blackwell, Malden (2015)

Osorio, S.; Do, P. T.; Fernie, A. R.: Profiling Primary Metabolites of Tomato Fruit with Gas Chromatography/Mass Spectrometry. In: Plant Metabolomics: Methods and Protocols, 2012/02/29 Ed., pp. 101 - 110 (Eds. Hardy, N. W.; Hall, R. D.). Humana Press Inc., Totowa, NJ, USA (2012)

Osorio, S.; Fernie, A. R.: Plant Systems Biology. In: Systems Biology (Ed. Meyers, R. A.). Wiley-Blackwell (2012)

Fernie, A. R.; Keurentjes, J. J. B.: Genetics, genomics and metabolomics. In: The biology of plant metabolomics, 8, 2011/05/03 Ed., pp. 219 - 260 (Ed. Hall, R. D.). Blackwell-Wiley, London, UK (2011)

Fait, A.; Sienkiewicz-Porzucek, A.; Fernie, A. R.: Metabolomics approaches to advance understanding of nitrogen assimilation and carbon nitrogen interactions. In: Nitrogen Metabolism in Plants in the Post-Genomic Era, 10, pp. 249 - 268 (Eds. Foyer, C. H.; Zhang, H.). Wiley-Blackwell, Oxford, UK (2010)

Erban, A.; Schauer, N.; Fernie, A. R.; Kopka, J.: Nonsupervised construction and application of mass spectral and retention time index libraries from time-of-flight gas chromatography-mass spectrometry metabolite profiles. In: Metabolomics: Methods and Protocols, pp. 19 - 38 (Ed. Weckwerth, W.). Humana Press Inc., Totowa, NJ, USA (2007)

Urbanczyk-Wochniak, E.; Willmitzer, L.; Fernie, A. R.: Integrating profiling data: using linear correlation to reveal coregulation of transcript and metabolites. In: Metabolomics: Methods and Protocols, pp. 77 - 85 (Ed. Weckwerth, W.). Humana Press Inc., Totowa, NJ, USA (2007)

Carrari, F.; Schauer, N.; Willmitzer, L.; Fernie, A. R.: Systems biology: A renaissance of the Top-down approach for plant analysis. In: Plant Metabolomics, pp. 185 - 198 (Eds. Nagata, T.; Lörz, H.; Widholm, J. M.). Springer-Verlag, Heidelberg, GER (2006)

Geigenberger, P.; Fernie, A. R.: Starch biosynthesis in the potato tuber. In: Food Biochemistry and Food Processing, pp. 253 - 270 (Eds. Hui, Y. H.; Corke, H.; DeLeyn, I.; Nip, W.-K.; Cross, N.). Blackwell Publ., Ames, IA, USA (2006)

Lytovchenko, A.; Geigenberger, P.; Willmitzer, L.; Fernie, A. R.: Starch content in plant tissues. In: Plant Genetic Engineering: Improving the Nutritional & Therapeutic Qualities of Plants, pp. 1 - 29 (Ed. Jaiwal, P. K.). Studium Press LLC, Houston, TX, USA (2006)

Fernie, A. R.; Sweetlove, L. J.: Broad range metabolite analysis: integration into genomics programs. In: Experimental standardization of classification of enzyme characteristics (Eds. Ketner, C.; Hicks, M. G.) (2004)

Fernie, A. R.; Willmitzer, L.: Carbohydrate metabolism. In: The handbook of Plant Biotechnology (Eds. Christou, P.; Klee, H. K.). Wiley, Chichester, UK (2004)

Urbanczyk-Wochniak, E.; Fernie, A. R.; Willmitzer, L.: The utility of transcriptomics and metabolomics in systems based analysis of plant metabolism. In: Understanding the Plant Genome. (Ed. Sadowski, J.). Institute of Plant Genetics, PAS, Poznan, POL (2004)

Fernie, A. R.; Roessner, U.; Willmitzer, L.: Metabolic Profiling of Plant Cells. In: Plant Physiology 3rd Edition (Eds. Taiz, L.; Zeiger, E.). Sinauer Associates, Inc., Sunderland, MA, USA (2001)

Hesse, H.; Harms, K.; von Ballmoos, P.; Brunold, C.; Willmitzer, L.; Hoefgen, R.: Serine acetyltransferase: A bottleneck for cysteine and glutathione syntheses? In: Sulfur Nutrition and Sulfur Assimilation in Higher Plants: molecular, biochemical and physiological aspects, pp. 321 - 323 (Ed. Brunold, C.). Paul Haupt Berne, Berne, SUI (2000)

Hesse, H.; K., H.; Klonus, D.; von Ballmoos, P.; Brunold, C.; Willmitzer, L.; Hoefgen, R.: Molecular engineering of sulfur assimilation in Higher Plants. In: Plant Sulfur Research in Europe, Landbauforschung Völkenrode, Vol. 218 (Sonderheft), pp. 55 - 59 (2000)

Herde, O.; Willmitzer, L.; Fisahn, J.: Exogenous electrical stimulation of tomato plants: Induction of proteinase inhibitor II gene expression and control of photosynthetic activity. In: Photosynthesis, Proceedings of the meeting, pp. 1 - 5 (Ed. Garab, G.). Kluwer Academic Publ., Budapest, HUN (1998)