Publications of the Group

Alhagdow, M.; Mounet, F.; Gilbert, L.; Nunes-Nesi, A.; Garcia, V.; Just, D.; Petit, J.; Beauvoit, B.; Fernie, A. R.; Rothan, C. et al.; Baldet, P.: Silencing of the mitochondrial ascorbate synthesizing enzyme L-galactono-1,4-lactone dehydrogenase affects plant and fruit development in tomato(1[w][OA]). Plant Physiology 145 (4), pp. 1408 - 1422 (2007)

Baxter, C. J.; Liu, J. L.; Fernie, A. R.; Sweetlove, L. J.: Determination of metabolic fluxes in a non-steady-state system. Phytochemistry 68 (16-18), pp. 2313 - 2319 (2007)

Baxter, C. J.; Redestig, H.; Schauer, N.; Repsilber, D.; Patil, K. R.; Nielsen, J.; Selbig, J.; Liu, J. L.; Fernie, A. R.; Sweetlove, L. J.: The metabolic response of heterotrophic Arabidopsis cells to oxidative stress. Plant Physiology 143 (1), pp. 312 - 325 (2007)

Ding, L.; Hofius, D.; Hajirezaei, M.-R.; Fernie, A. R.; Bornke, F.; Sonnewald, U.: Functional analysis of the essential bifunctional tobacco enzyme 3-dehydroquinate dehydratase/shikimate dehydrogenase in transgenic tobacco plants. Journal of Experimental Botany 58 (8), pp. 2053 - 2067 (2007)

Fahnenstich, H.; Saigo, M.; Niessen, M.; Zanor, M. I.; Andreo, C. S.; Fernie, A. R.; Drincovich, M. F.; Flugge, U. I.; Maurino, V. G.: Alteration of organic acid metabolism in Arabidopsis overexpressing the maize C(4)NADP-malic enzyme causes accelerated senescence during extended darkness. Plant Physiology 145 (3), pp. 640 - 652 (2007)

Footitt, S.; Dietrich, D.; Fait, A.; Fernie, A. R.; Holdsworth, M. J.; Baker, A.; Theodoulou, F. L.: The COMATOSE ATP-binding cassette transporter is required for full fertility in arabidopsis. Plant Physiology 144 (3), pp. 1467 - 1480 (2007)

Frankel, N.; Nunes-Nesi, A.; Balbo, I.; Mazuch, J.; Centeno, D.; Iusem, N. D.; Fernie, A. R.; Carrari, F.: ci21A/Asr1 expression influences glucose accumulation in potato tubers. Plant Molecular Biology 63 (5), pp. 719 - 730 (2007)

Graham, J. W.; Williams, T. C.; Morgan, M.; Fernie, A. R.; Ratcliffe, R. G.; Sweetlove, L. J.: Glycolytic enzymes associate dynamically with mitochondria in response to respiratory demand and support substrate channeling. Plant Cell 19 (11), pp. 3723 - 3738 (2007)

Kusano, M.; Fukushima, A.; Arita, M.; Jonsson, P.; Moritz, T.; Kobayashi, M.; Hayashi, N.; Tohge, T.; Saito, K.: Unbiased characterization of genotype-dependent metabolic regulations by metabolomic approach in Arabidopsis thaliana. BMC Systems Biology 1, p. 53 (2007)

Lemaitre, T.; Urbanczyk-Wochniak, E.; Flesch, V.; Bismuth, E.; Fernie, A. R.; Hodges, M.: NAD-dependent isocitrate dehydrogenase mutants of arabidopsis suggest the enzyme is not limiting for nitrogen assimilation. Plant Physiology 144 (3), pp. 1546 - 1558 (2007)

Messerli, G.; Nia, V. P.; Trevisan, M.; Kolbe, A.; Schauer, N.; Geigenberger, P.; Chen, J. C.; Davison, A. C.; Fernie, A. R.; Zeeman, S. C.: Rapid classification of phenotypic mutants of arabidopsis via metabolite fingerprinting. Plant Physiology 143 (4), pp. 1484 - 1492 (2007)

Nunes-Nesi, A.; Carrari, F.; Gibon, Y.; Sulpice, R.; Lytovchenko, A.; Fisahn, J.; Graham, J.; Ratcliffe, R. G.; Sweetlove, L. J.; Fernie, A. R.: Deficiency of mitochondrial fumarase activity in tomato plants impairs photosynthesis via an effect on stomatal function. Plant Journal 50 (6), pp. 1093 - 1106 (2007)

Raschke, M.; Buerkle, L.; Mueller, N.; Nunes-Nesi, A.; Fernie, A. R.; Arigoni, D.; Amrhein, N.; Fitzpatrick, T. B.: Vitamin B1 biosynthesis in plants requires the essential iron sulfur cluster protein, THIC. Proceedings of the National Academy of Sciences of the United States of America 104 (49), pp. 19637 - 19642 (2007)

Saladie, M.; Matas, A. J.; Isaacson, T.; Jenks, M. A.; Goodwin, S. M.; Niklas, K. J.; Xiaolin, R.; Labavitch, J. M.; Shackel, K. A.; Fernie, A. R. et al.; Lytovchenko, A.; O'Neill, M. A.; Watkins, C. B.; Rose, J. K. C.: A reevaluation of the key factors that influence tomato fruit softening and integrity. Plant Physiology 144 (2), pp. 1012 - 1028 (2007)

Semel, Y.; Schauer, N.; Roessner, U.; Zamir, D.; Fernie, A. R.: Metabolite analysis for the comparison of irrigated and non-irrigated field grown tomato of varying genotype. Metabolomics 3 (3), pp. 289 - 295 (2007)

Steuer, R.; Nesi, A. N.; Fernie, A. R.; Gross, T.; Blasius, B.; Selbig, J.: From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle. Bioinformatics 23 (11), pp. 1378 - 1385 (2007)

Studart-Guimaraes, C.; Fait, A.; Nunes-Nesi, A.; Carrari, F.; Usadel, B.; Fernie, A. R.: Reduced Expression of Succinyl CoA Ligase can be Compensated for by an Upregulation of the {gamma}-amino-butyrate (GABA) Shunt in Illuminated Tomato Leaves. Plant Physiology 145 (3), pp. 626 - 639 (2007)

Szymanski, J.; Bielecka, M.; Carrari, F.; Fernie, A. R.; Hoefgen, R.; Nikiforova, V. J.: On the processing of metabolic information through metabolite-gene communication networks: an approach for modelling causality. Phytochemistry 68 (16-18), pp. 2163 - 2175 (2007)

Baginsky, S.; Fernie, A. R.: Plant Systems Biology. Birkhäuser Verlag, Basel, SUI (2007)

Erban, A.; Schauer, N.; Fernie, A. R.; Kopka, J.: Nonsupervised construction and application of mass spectral and retention time index libraries from time-of-flight gas chromatography-mass spectrometry metabolite profiles. In: Metabolomics: Methods and Protocols, pp. 19 - 38 (Ed. Weckwerth, W.). Humana Press Inc., Totowa, NJ, USA (2007)

Urbanczyk-Wochniak, E.; Willmitzer, L.; Fernie, A. R.: Integrating profiling data: using linear correlation to reveal coregulation of transcript and metabolites. In: Metabolomics: Methods and Protocols, pp. 77 - 85 (Ed. Weckwerth, W.). Humana Press Inc., Totowa, NJ, USA (2007)

Urbanczyk-Wochniak, E.; Baxter, C.; Sweetlove, L. J.; Fernie, A. R.: Profiling diurnal changes in metabolite and transcript levels in potato leaves. In: 3rd International Congress on Plant Metabolomics, pp. 183 - 192. 3rd International Congress on Plant Metabolomics, Iowa State Univ, Ames, IA. (2007)

Willmitzer, L.; Caldana, C.; Fernie, A. R.; Giavalisco, P.; MA, H.; Redestig, H.; Steinhauser, D.: Integrative Analysis of Transcriptome and Metabolome Data. In: Proceedings of the German Conference on Bioinformatics, Vol. 01. Proceedings of the German Conference on Bioinformatics, GCB 2007, Potsdam, Germany, September 26, 2007 - September 28, 2007. (2007)

Nunes-Nesi, A.: Upregulation of photosynthetic performance and growth as a consequence of a decreased TCA cycle enzymes activity in genetic manipulated tomato plants. In Photosynthesis Research, 91 (2-3), pp. 247 - 248. (2007)

Fernie, A. R.: The future of metabolic phytochemistry: Larger numbers of metabolites, higher resolution, greater understanding. Phytochemistry 68 (22-24), pp. 2861 - 2880 (2007)

Lytovchenko, A.; Sonnewald, U.; Fernie, A. R.: The complex network of non-cellulosic carbohydrate metabolism. Current Opinion in Plant Biology 10 (3), pp. 227 - 235 (2007)

Nunes-Nesi, A.; Sweetlove, L. J.; Fernie, A. R.: Operation and function of the tricarboxylic acid cycle in the illuminated leaf. Physiologia Plantarum 129 (1), pp. 45 - 56 (2007)

Sweetlove, L. J.; Fait, A.; Nunes-Nesi, A.; Williams, T.; Fernie, A. R.: The mitochondrion: An integration point of cellular metabolism and signalling. Critical Reviews in Plant Sciences 26 (1), pp. 17 - 43 (2007)