Publications of the Group

Clement, B.; Pollmann, S.; Weiler, E.; Urbanczyk-Wochniak, E.; Otten, L.: The Agrobacterium vitis T-6b oncoprotein induces auxin-independent cell expansion in tobacco. Plant Journal 45 (6), pp. 1017 - 1027 (2006)

Fait, A.; Angelovici, R.; Less, H.; Ohad, I.; Urbanczyk-Wochniak, E.; Fernie, A. R.; Galili, G.: Arabidopsis seed development and germination is associated with temporally distinct metabolic switches. Plant Physiology 142 (3), pp. 839 - 854 (2006)

Farre, E. M.; Tech, S.; Trethewey, R. N.; Fernie, A. R.; Willmitzer, L.: Subcellular pyrophosphate metabolism in developing tubers of potato (Solanum tuberosum). Plant Molecular Biology 62 (1-2), pp. 165 - 179 (2006)

Hackel, A.; Schauer, N.; Carrari, F.; Fernie, A. R.; Grimm, B.; Kuhn, C.: Sucrose transporter LeSUT1 and LeSUT2 inhibition affects tomato fruit development in different ways. Plant Journal 45 (2), pp. 180 - 192 (2006)

Hajirezaei, M.-R.; Biemelt, S.; Peisker, M.; Lytovchenko, A.; Fernie, A. R.; Sonnewald, U.: The influence of cytosolic phosphorylating glyceraldehyde 3-phosphate dehydrogenase (GAPC) on potato tuber metabolism. Journal of Experimental Botany 57 (10), pp. 2363 - 2377 (2006)

Ishizaki, K.; Schauer, N.; Larson, T. R.; Graham, I. A.; Fernie, A. R.; Leaver, C. J.: The mitochondrial electron transfer flavoprotein complex is essential for survival of Arabidopsis in extended darkness. Plant Journal 47 (5), pp. 751 - 760 (2006)

Joshi, V.; Laubengayer, K. M.; Schauer, N.; Fernie, A. R.; Jander, G.: Two Arabidopsis threonine aldolases are nonredundant and compete with threonine deaminase for a common substrate pool. Plant Cell 18 (12), pp. 3564 - 3575 (2006)

Junker, B. H.; Wuttke, R.; Nunes-Nesi, A.; Steinhauser, D.; Schauer, N.; Buessis, D.; Willmitzer, L.; Fernie, A. R.: Enhancing vacuolar sucrose cleavage within the developing potato tuber has only minor effects on metabolism. Plant and Cell Physiology 47 (2), pp. 277 - 289 (2006)

Kolbe, A.; Oliver, S. N.; Fernie, A. R.; Stitt, M.; van Dongen, J. T.; Geigenberger, P.: Combined transcript and metabolite profiling of Arabidopsis leaves reveals fundamental effects of the thiol-disulfide status on plant metabolism. Plant Physiology 141 (2), pp. 412 - 422 (2006)

Lisec, J.; Schauer, N.; Kopka, J.; Willmitzer, L.; Fernie, A. R.: Gas chromatography mass spectrometry-based metabolite profiling in plants. Nature Protocols 1 (1), pp. 387 - 396 (2006)

Palmieri, L.; Arrigoni, R.; Blanco, E.; Carrari, F.; Zanor, M. I.; Studart-Guimaraes, C.; Fernie, A. R.; Palmieri, F.: Molecular identification of an Arabidopsis S-adenosylmethionine transporter. Analysis of organ distribution, bacterial expression, reconstitution into liposomes, and functional characterization. Plant Physiology 142 (3), pp. 855 - 865 (2006)

Schauer, N.; Semel, Y.; Roessner, U.; Gur, A.; Balbo, I.; Carrari, F.; Pleban, T.; Perez-Melis, A.; Bruedigam, C.; Kopka, J. et al.; Willmitzer, L.; Zamir, D.; Fernie, A. R.: Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement. Nature Biotechnology 24 (4), pp. 447 - 454 (2006)

Schauer, N.; Trenkamp, S.: Gesündere Tomaten durch Wildsorten? Gezielte Metabolomanalyse und umfassende Phänotypisierung von interspezifischen Tomatenlinien. GenomXpress 2, pp. 19 - 21 (2006)

Steinfath, M.; Repsilber, D.; Hische, M.; Schauer, N.; Fernie, A. R.; Selbig, J.: Metabolite profiles as a reflection of physiological status - a methodological validation. Journal of Integrative Bioinformatics 3, pp. 2 - 18 (2006)

Sweetlove, L. J.; Lytovchenko, A.; Morgan, M.; Nunes-Nesi, A.; Taylor, N. L.; Baxter, C. J.; Eickmeier, I.; Fernie, A. R.: Mitochondrial uncoupling protein is required for efficient photosynthesis. Proceedings of the National Academy of Sciences of the United States of America 103 (51), pp. 19587 - 19592 (2006)

Tieman, D.; Taylor, M.; Schauer, N.; Fernie, A. R.; Hanson, A. D.; Klee, H. J.: Tomato aromatic amino acid decarboxylases participate in synthesis of the flavor volatiles 2-phenylethanol and 2-phenylacetaldehyde. Proceedings of the National Academy of Sciences of the United States of America 103 (21), pp. 8287 - 8292 (2006)

Urbanczyk-Wochniak, E.; Usadel, B.; Thimm, O.; Nunes-Nesi, A.; Carrari, F.; Davy, M.; Blaesing, O.; Kowalczyk, M.; Weicht, D.; Polinceusz, A. et al.; Meyer, S.; Stitt, M.; Fernie, A. R.: Conversion of MapMan to allow the analysis of transcript data from Solanaceous species: Effects of genetic and environmental alterations in energy metabolism in the leaf. Plant Molecular Biology 60 (5), pp. 773 - 792 (2006)

Wagner, S.; Bernhardt, A.; Leuendorf, J. E.; Drewke, C.; Lytovchenko, A.; Mujahed, N.; Gurgui, C.; Frommer, W. B.; Leistner, E.; Fernie, A. R. et al.; Hellmann, H.: Analysis of the Arabidopsis rsr4-1/pdx1-3 mutant reveals the critical function of the PDX1 protein family in metabolism, development, and vitamin B6 biosynthesis. Plant Cell 18 (7), pp. 1722 - 1735 (2006)

Carrari, F.; Schauer, N.; Willmitzer, L.; Fernie, A. R.: Systems biology: A renaissance of the Top-down approach for plant analysis. In: Plant Metabolomics, pp. 185 - 198 (Eds. Nagata, T.; Lörz, H.; Widholm, J. M.). Springer-Verlag, Heidelberg, GER (2006)

Geigenberger, P.; Fernie, A. R.: Starch biosynthesis in the potato tuber. In: Food Biochemistry and Food Processing, pp. 253 - 270 (Eds. Hui, Y. H.; Corke, H.; DeLeyn, I.; Nip, W.-K.; Cross, N.). Blackwell Publ., Ames, IA, USA (2006)

Lytovchenko, A.; Geigenberger, P.; Willmitzer, L.; Fernie, A. R.: Starch content in plant tissues. In: Plant Genetic Engineering: Improving the Nutritional & Therapeutic Qualities of Plants, pp. 1 - 29 (Ed. Jaiwal, P. K.). Studium Press LLC, Houston, TX, USA (2006)

Carrari, F.; Baxter, C.; Usadel, B.; Urbanczyk-Wochniak, E.; Zanor, M. I.; Nunes-Nesi, A.; Nikiforova, V.; Centero, D.; Ratzka, A.; Pauly, M. et al.; Sweetlove, L. J.; Fernie, A. R.: Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behavior. Plant Physiology 142 (4), pp. 1380 - 1396 (2006)

Carrari, F.; Fernie, A. R.: Metabolic regulation underlying tomato fruit development. Journal of Experimental Botany 57 (9), pp. 1883 - 1897 (2006)

Fernie, A. R.; Tadmor, Y.; Zamir, D.: Natural genetic variation for improving crop quality. Current Opinion in Plant Biology 9 (2), pp. 196 - 202 (2006)

Schauer, N.; Fernie, A. R.: Plant metabolomics: towards biological function and mechanism. Trends in Plant Science 11 (10), pp. 508 - 516 (2006)

Usadel, B.; Nagel, A.; Steinhauser, D.; Gibon, Y.; Blaesing, O. E.; Redestig, H.; Sreenivasulu, N.; Krall, L.; Hannah, M. A.; Poree, F. et al.; Fernie, A. R.; Stitt, M.: PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments. BMC Bioinformatics 7, p. 535 (2006)