Publications of the Group

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Journal Article (732)

1.

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Batista-Silva, W.; Medeiros, D. B.; Rodrigues-Salvador, A.; Daloso, D. M.; Omena-Garcia, R. P.; Oliveira, F. S.; Pino, L. E.; Pereira Peres, L. E.; Nunes-Nesi, A.; Fernie, A. R. et al.; Zsogon, A.; Araujo, W. L.: Modulation of auxin signalling through DIAGETROPICA and ENTIRE differentially affects tomato plant growth via changes in photosynthetic and mitochondrial metabolism. Plant, Cell and Environment 42 (2), pp. 448 - 465 (2019)
2.

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da Fonseca-Pereira, P.; Daloso, D. M.; Gago, J.; de Oliveira Silva, F.M.; Condori-Apfata, J.A.; Florez-Sarasa, I. D.; Tohge, T.; Reichheld, J.-P.; Nunes-Nesi, A.; Fernie, A. R. et al.; Araújo, W.L.: The Mitochondrial Thioredoxin System Contributes to the Metabolic Responses Under Drought Episodes in Arabidopsis. Plant amp; cell physiology 60 (1), pp. 213 - 229 (2019)
3.

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Fang, C.; Fernie, A. R.; Luo, J.: Exploring the Diversity of Plant Metabolism. Trends in Plant Science 24 (1), pp. 83 - 98 (2019)
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Fernie, A. R.; Gutierrez-Marcos, J.: From genome to phenome: genome-wide association studies and other approaches that bridge the genotype to phenotpe gap. Plant Journal 97 (1), pp. 5 - 7 (2019)
5.

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Li, Y.; Lu, Y.; Li, L.; Chu, Z.; Zhang, H.; Li, H.; Fernie, A. R.; Ouyang, B.: Impairment of hormone pathways results in a general disturbance of fruit primary metabolism in tomato. Food Chemistry 274, pp. 170 - 179 (2019)
6.

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Martins, A. O.; Omena-Garcia, R. P.; Oliveira, F. S.; Silva, W. A.; Hajirezaei, M.-R.; Vallarino, J. G.; Ribeiro, D. M.; Fernie, A. R.; Nunes-Nesi, A.; Araujo, W. L.: Differential root and shoot responses in the metabolism of tomato plants exhibiting reduced levels of gibberellin. Environmental and Experimental Botany 157, pp. 331 - 343 (2019)
7.

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Matz, J. M.; Watanabe, M.; Falade, M.; Tohge, T.; Hoefgen, R.; Matuschewski, K.: Plasmodium Para-Aminobenzoate Synthesis and Salvage Resolve Avoidance of Folate Competition and Adaptation to Host Diet. Cell Reports 26 (2), pp. 356 - 363 (2019)
8.

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Omena-Garcia, R. P.; Martins, A. O.; Medeiros, D.B.; Vallarino, J. G.; Ribeiro, D. M.; Fernie, A. R.; Araújo, W. L.; Nunes-Nesi, A.: Growth and metabolic adjustments in response to gibberellin deficiency in drought stressed tomato plants. Environmental and Experimental Botany 159, pp. 95 - 107 (2019)
9.

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Alseekh, S.; Bermudez, L.; de Haro, L. A.; Fernie, A. R.; Carrari, F.: Crop metabolomics: from diagnostics to assisted breeding. Metabolomics 14 (11), 148 (2018)
10.

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Brandt, S.; Fachinger, S.; Tohge, T.; Fernie, A. R.; Braun, H.-P.; Hildebrandt, T. M.: Extended darkness induces internal turnover of glucosinolates in Arabidopsis thaliana leaves. PLoS One 13 (8), pp. 1 - 15 (2018)
11.

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Fernie, A. R.: Extending the cascade: identification of a mitogen-activated protein kinase phosphatase playing a key role in rice yield. The Plant Journal 95 (6), pp. 935 - 936 (2018)
12.

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Kumar, P.; Garrido, E.; Zhao, K.; Zheng, Y.; Alseekh, S.; Vargas-Ortiz, E.; Fernie, A. R.; Fei, Z.; Poveda, K.; Jander, G.: Tecia solanivora infestation increases tuber starch accumulation in Pastusa Suprema potatoes. Journal of Integrative Plant Biology 60 (11), pp. 1083 - 1096 (2018)
13.

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Tohge, T.; Borghi, M.; Fernie, A. R.: The natural variance of the Arabidopsis floral secondary metabolites. Scientific Data 5, 180051 (2018)
14.

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Tohge, T.; Borghi, M.; Fernie, A. R.: Data descriptor:The natural variance of the Arabidopsis floral secondary metabolites. Scientific Data 5, 180051 (2018)
15.

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Alhajturki, D.; Muralidharan, S.; Nurmi, M.; Rowan, B. A.; Lunn, J. E.; Boldt, H.; Salem, M.A.; Alseekh, S.; Jorzig, C.; Feil, R. et al.; Giavalisco, P.; Fernie, A. R.; Weigel, D.; Laitinen, R.: Dose-dependent interactions between two loci trigger altered shoot growth in BG-5 × Krotzenburg-0 (Kro-0) hybrids of Arabidopsis thaliana. New Phytologist 217 (1), pp. 392 - 406 (2018)
16.

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Alseekh, S.; Fernie, A. R.: Metabolomics 20years on: what have we learned and what hurdles remain? The Plant Journal 94 (6), pp. 933 - 942 (2018)
17.

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Andersson, M.; Turesson, H.; Arrivault, S.; Zhang, Y.; Fält, A.-S.; Fernie, A. R.; Hofvander, P.: Inhibition of plastid PPase and NTT leads to major changes in starch and tuber formation in potato. Journal of Experimental Botany 69 (8), pp. 1913 - 1924 (2018)
18.

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Arif, M.A.; Alseekh, S.; Harb, J.; Fernie, A. R.; Frank, W.: Abscisic acid, cold and salt stimulate conserved metabolic regulation in the moss Physcomitrella patens. Plant Biology 20 (6), pp. 1014 - 1022 (2018)
19.

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Avin-Wittenberg, T.; Baluška, F.; Bozhkov, P.V.; Elander, P.H.; Fernie, A. R.; Galili, G.; Hassan, A.; Hofius, D.; Isono, E.; Le Bars, R. et al.; Masclaux-Daubresse, C.; Minina, E.A.; Peled-Zehavi, H.; Coll, N.S.; Sandalio, L.M.; Satiat-Jeunemaitre, B.; Sirko, A.; Testillano, P.S.; Batoko, H.: Autophagy-related approaches for improving nutrient use efficiency and crop yield protection. Journal of Experimental Botany 69 (6), pp. 1335 - 1353 (2018)
20.

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Avin-Wittenberg, T.; Baluska, F.; Bozhkov, P. V.; Elander, P. H.; Fernie, A. R.; Galili, G.; Hassan, A.; Hofius, D.; Isono, E.; Le Bars, R. et al.; Masclaux-Daubresse, C.; Minina, E. A.; Peled-Zehavi, H.; Coll, N. S.; Sandalio, L. M.; Satiat-Jeunemaitre, B.; Sirko, A.; Testillano, P. S.; Batoko, H.: Corrigendum: Autophagy-related approaches for improving nutrient use efficiency and crop yield protection. Journal of Experimental Botany 69 (12), p. 3173 - 3173 (2018)
21.

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Basler, G.; Fernie, A. R.; Nikoloski, Z.: Advances in metabolic flux analysis toward genome-scale profiling of higher organisms. Bioscience Reports 38 (6), 6 (2018)
22.

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Bermúdez, L.; Del Pozo, T.; Silvestre Lira, B.; de Godoy, F.; Boos, I.; Romanò, C.; Previtali, V.; Almeida, J.; Bréhélin, C.; Asis, R. et al.; Quadrana, L.; Demarco, D.; Alseekh, S.; Salinas Gamboa, R.; Pérez-Flores, L.; Dominguez, P.G.; Rothan, C.; Fernie, A. R.; González, M.; Stocker, A.; Hemmerle, A.; Clausen, M.H.; Carrari, F.; Rossi, M.: A Tomato Tocopherol-Binding Protein Sheds Light on Intracellular α-Tocopherol Metabolism in Plants. Plant and Cell Physiology 59 (11), pp. 2188 - 2203 (2018)
23.

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Borghi, M.; Xie, D.-Y.: Cloning and characterization of a monoterpene synthase gene from flowers of Camelina sativa. Planta 247 (2), pp. 443 - 457 (2018)
24.

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Bustamante, C. A.; Brotman, Y.; Monti, L. L.; Gabilondo, J.; Budde, C. O.; Lara, M. V.; Fernie, A. R.; Drincovich, M. F.: Differential lipidome remodeling during postharvest of peach varieties with different susceptibility to chilling injury. Physiologia Plantarum 163 (1), pp. 2 - 17 (2018)
25.

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Cavalcanti, J. H. F.; Kirma, M.; Barros, J. A. S.; Quinhones, C. G. S.; Pereira-Lima, I. A.; Obata, T.; Nunes-Nesi, A.; Galili, G.; Fernie, A. R.; Avin-Wittenberg, T. et al.; Araujo, W. L.: An L,L-diaminopimelate aminotransferase mutation leads to metabolic shifts and growth inhibition in Arabidopsis. Journal of Experimental Botany 69 (22), pp. 5489 - 5506 (2018)
26.

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Cavalcanti, J.H.F.; Kirma, M.; Barros, J.A.S.; Quinhones, C.G.S.; Pereira-Lima, Í.; Obata, T.; Nunes-Nesi, A.; Galili, G.; Fernie, A. R.; Avin-Wittenberg, T. et al.; Araújo, W.L.: An L,L-diaminopimelate aminotransferase mutation leads to metabolic shifts and growth inhibition in Arabidopsis. Journal of Experimental Botany 69 (22), pp. 5489 - 5506 (2018)
27.

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Chen, J.; Wang, J.; Chen, W.; Sun, W.; Peng, M.; Yuan, Z.; Shen, S.; Xie, K.; Jin, C.; Sun, Y. et al.; Liu, X.; Fernie, A. R.; Yu, S.; Luo, J.: Metabolome Analysis of Multi-Connected Biparental Chromosome Segment Substitution Line Populations. Plant Physiology 178 (2), pp. 612 - 625 (2018)
28.

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Cubillos, A.; Tong, H.; Alseekh, S.; de Abreu e Lima, F.; Yu, J.; Fernie, A. R.; Nikoloski, Z.; Laitinen, R.: Inheritance patterns in metabolism and growth in diallel crosses of Arabidopsis thaliana from a single growth habitat. Heredity 120, pp. 463 - 473 (2018)
29.

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Cui, X.; Wang, Y.; Ren, Y.; Fernie, A. R.; Alseekh, S.; He, H.; Gong, G.; Zhang, H.; Guo, S.; Zhang, J. et al.; Xu, Y.: Variance analysis of metabolite components between low sugar wild and high sugar cultivated watermelon fruits. Acta Horticulturae Sinica 45 (4), pp. 775 - 783 (2018)
30.

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de Oliveira Silva, F. M.; Lichtenstein, G.; Alseekh, S.; Rosado-Souza, L.; Conte, M.; Suguiyama, V. F.; Lira, B. S.; Fanourakis, D.; Usadel, B.; Bhering, L. L. et al.; DaMatta, F. M.; Sulpice, R.; Araújo, W. L.; Rossi, M.; de Setta, N.; Fernie, A. R.; Carrari, F.; Nunes-Nesi, A.: The genetic architecture of photosynthesis and plant growth-related traits in tomato. Plant, Cell and Environment 41 (2), pp. 327 - 341 (2018)
31.

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Del-Saz, N. F.; Ribas-Carbo, M.; McDonald, A. E.; Lambers, H.; Fernie, A. R.; Florez-Sarasa, I. D.: An In Vivo Perspective of the Role(s) of the Alternative Oxidase Pathway. Trends in Plant Science 23 (3), pp. 206 - 219 (2018)
32.

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Durgud, M.; Gupta, S.; Ivanov, I.; Omidbakhshfard, M. A.; Benina, M.; Alseekh, S.; Staykov, N.; Hauenstein, M.; Dijkwel, P. P.; Hortensteiner, S. et al.; Toneva, V.; Brotman, Y.; Fernie, A. R.; Mueller-Roeber, B.; Gechev, T. S.: Molecular Mechanisms Preventing Senescence in Response to Prolonged Darkness in a Desiccation-Tolerant Plant. Plant Physiology 177 (3), pp. 1319 - 1338 (2018)
33.

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El Aou-ouad, H.; Bota, J.; Obata, T.; Montero, R.; Fernie, A. R.; Medrano, H.; Pou, A.; Florez-Sarasa, I. D.: Combined drought and virus infection trigger aspects of respiratory metabolism related to grapevine physiological responses. Journal of Plant Physiology 231, pp. 19 - 30 (2018)
34.

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Fàbregas, N.; Lozano-Elena, F.; Blasco-Escámez, D.; Tohge, T.; Martínez-Andújar, C.; Albacete, A.; Osorio, S.; Bustamante, M.; Riechmann, J. L.; Nomura, T. et al.; Yokota, T.; Conesa, A.; Alfocea, F. P.; Fernie, A. R.; Caño-Delgado, A. I.: Overexpression of the vascular brassinosteroid receptor BRL3 confers drought resistance without penalizing plant growth. Nature Communications 9 (1), 4680 (2018)
35.

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Fernandez Del-Saz, N.; Romero-Munar, A.; Cawthray, G. R.; Palma, F.; Aroca, R.; Baraza, E.; Florez-Sarasa, I. D.; Lambers, H.; Ribas-Carbo, M.: Phosphorus concentration coordinates a respiratory bypass, synthesis and exudation of citrate, and the expression of high-affinity phosphorus transporters in Solanum lycopersicum. Plant, Cell and Environment 41 (4), pp. 865 - 875 (2018)
36.

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Fernie, A. R.; Alseekh, S.: Defining the convergence of ethylene and auxin signaling in tomato. New Phytologist 219 (2), pp. 479 - 481 (2018)
37.

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Fernie, A. R.; Zhang, Y.; Sweetlove, L. J.: Passing the Baton: Substrate Channelling in Respiratory Metabolism. Research (2018)
38.

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Gakiere, B.; Fernie, A. R.; Petriacq, P.: More to NAD(+) than meets the eye: A regulator of metabolic pools and gene expression in Arabidopsis. Free Radical Biology and Medicine 122, pp. 86 - 95 (2018)
39.

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Gakière, B.; Hao, J.; de Bont, L.; Pétriacq, P.; Nunes-Nesi, A.; Fernie, A. R.: NAD+ Biosynthesis and Signaling in Plants. Critical Reviews in Plant Sciences 37 (4), pp. 259 - 307 (2018)
40.

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Garbowicz, K.; Liu, Z.; Alseekh, S.; Tieman, D.; Taylor, M.; Kuhalskaya, A.; Ofner, I.; Zamir, D.; Klee, H. J.; Fernie, A. R. et al.; Brotman, Y.: Quantitative Trait Loci Analysis Identifies a Prominent Gene Involved in the Production of Fatty Acid-Derived Flavor Volatiles in Tomato. Molecular Plant 11 (9), pp. 1147 - 1165 (2018)
41.

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Gupta, K. J.; Kumari, A.; Florez-Sarasa, I. D.; Fernie, A. R.; Igamberdiev, A. U.: Interaction of nitric oxide with the components of the plant mitochondrial electron transport chain. Journal of Experimental Botany 69 (14 -SI), pp. 3413 - 3424 (2018)
42.

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Heyneke, E.; Fernie, A. R.: Metabolic regulation of photosynthesis. Biochemical Society Transactions 46 (2), pp. 321 - 328 (2018)
43.

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Hsueh, Y.-C.; Nicolaisen, K.; Gross, L.E.; Nöthen, J.; Schauer, N.; Vojta, L.; Ertel, F.; Koch, I.; Ladig, R.; Fulgosi, H. et al.; Fernie, A. R.; Schleiff, E.: The outer membrane Omp85-like protein P39 influences metabolic homeostasis in mature Arabidopsis thaliana. Plant Biology 20 (5), pp. 825 - 833 (2018)
44.

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Huang, L.; Pyc, M.; Alseekh, S.; McCarty, D. R.; de Crecy-Lagard, V.; Gregory III, J. F.; Henry, C. S.; Fernie, A. R.; Mullen, R. T.; Hanson, A. D.: A plastidial pantoate transporter with a potential role in pantothenate synthesis. Biochemical Journal 475, pp. 813 - 825 (2018)
45.

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Inostroza-Blancheteau, C.; de Oliveira Silva, F.M.; Durán, F.; Solano, J.; Obata, T.; Machado, M.; Fernie, A. R.; Reyes-Díaz, M.; Nunes-Nesi, A.: Metabolic diversity in tuber tissues of native Chiloé potatoes and commercial cultivars of Solanum tuberosum ssp. tuberosum L. Metabolomics 14 (10), 138 (2018)
46.

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Kamranfar, I.; Xue, G.-P.; Tohge, T.; Sedaghatmehr, M.; Fernie, A. R.; Balazadeh, S.; Mueller-Roeber, B.: Transcription factor RD26 is a key regulator of metabolic reprogramming during dark-induced senescence. New Phytologist 218 (4), pp. 1543 - 1557 (2018)
47.

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Kong, F.; Burlacot, A.; Liang, Y.; Legeret, B.; Alseekh, S.; Brotman, Y.; Fernie, A. R.; Krieger-Liszkay, A.; Beisson, F.; Peltier, G. et al.; Li-Beisson, Y.: Interorganelle Communication: Peroxisomal MALATE DEHYDROGENASE2 Connects Lipid Catabolism to Photosynthesis through Redox Coupling in Chlamydomonas. Plant Cell 30 (8), pp. 1824 - 1847 (2018)
48.

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Kou, S.; Chen, L.; Tu, W.; Scossa, F.; Wang, Y.; Liu, J.; Fernie, A. R.; Song, B.; Xie, C.: The arginine decarboxylase gene ADC1, associated to the putrescine pathway, plays an important role in potato cold-acclimated freezing tolerance as revealed by transcriptome and metabolome analyses. The Plant Journal 96 (6), pp. 1283 - 1298 (2018)
49.

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Lima, V. F.; Medeiros, D.B.; Anjos, L. D.; Gago, J.; Fernie, A. R.; Daloso, D. M.: Toward multifaceted roles of sucrose in the regulation of stomatal movement. Plant Signaling & Behavior 0 (0), pp. 1 - 8 (2018)
50.

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Lorenz, C.; Brandt, S.; Borisjuk, L.; Rolletschek, H.; Heinzel, N.; Tohge, T.; Fernie, A. R.; Braun, H.-P.; Hildebrandt, T. M.: The Role of Persulfide Metabolism During Arabidopsis Seed Development Under Light and Dark Conditions. Frontiers in Plant Science (2018)

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