Publications of the Group

Journal Article (722)

1. 1.
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   Fang, C.; Fernie, A. R.; Luo, J.: Exploring the Diversity of Plant Metabolism. Trends in Plant Science 24 (1), pp. 83 - 98 (2019)
2. 2.
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   Li, Y.; Lu, Y.; Li, L.; Chu, Z.; Zhang, H.; Li, H.; Fernie, A. R.; Ouyang, B.: Impairment of hormone pathways results in a general disturbance of fruit primary metabolism in tomato. Food Chemistry 274, pp. 170 - 179 (2019)
3. 3.
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   Martins, A. O.; Omena-Garcia, R. P.; Oliveira, F. S.; Silva, W. A.; Hajirezaei, M.-R.; Vallarino, J. G.; Ribeiro, D. M.; Fernie, A. R.; Nunes-Nesi, A.; Araujo, W. L.: Differential root and shoot responses in the metabolism of tomato plants exhibiting reduced levels of gibberellin. Environmental and Experimental Botany 157, pp. 331 - 343 (2019)
4. 4.
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   Omena-Garcia, R. P.; Martins, A. O.; Medeiros, D.B.; Vallarino, J. G.; Ribeiro, D. M.; Fernie, A. R.; Araújo, W. L.; Nunes-Nesi, A.: Growth and metabolic adjustments in response to gibberellin deficiency in drought stressed tomato plants. Environmental and Experimental Botany 159, pp. 95 - 107 (2019)
5. 5.
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   Alseekh, S.; Bermudez, L.; de Haro, L. A.; Fernie, A. R.; Carrari, F.: Crop metabolomics: from diagnostics to assisted breeding. Metabolomics 14 (11), 148 (2018)
6. 6.
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   Brandt, S.; Fachinger, S.; Tohge, T.; Fernie, A. R.; Braun, H.-P.; Hildebrandt, T. M.: Extended darkness induces internal turnover of glucosinolates in Arabidopsis thaliana leaves. PLoS One 13 (8), pp. 1 - 15 (2018)
7. 7.
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   Fernie, A. R.: Extending the cascade: identification of a mitogen-activated protein kinase phosphatase playing a key role in rice yield. The Plant Journal 95 (6), pp. 935 - 936 (2018)
8. 8.
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   Tohge, T.; Borghi, M.; Fernie, A. R.: The natural variance of the Arabidopsis floral secondary metabolites. Scientific Data 5, 180051 (2018)
9. 9.
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   Tohge, T.; Borghi, M.; Fernie, A. R.: Data descriptor:The natural variance of the Arabidopsis floral secondary metabolites. Scientific Data 5, 180051 (2018)
10. 10.
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    Alhajturki, D.; Muralidharan, S.; Nurmi, M.; Rowan, B. A.; Lunn, J. E.; Boldt, H.; Salem, M.A.; Alseekh, S.; Jorzig, C.; Feil, R. et al.; Giavalisco, P.; Fernie, A. R.; Weigel, D.; Laitinen, R.: Dose-dependent interactions between two loci trigger altered shoot growth in BG-5 × Krotzenburg-0 (Kro-0) hybrids of Arabidopsis thaliana. New Phytologist 217 (1), pp. 392 - 406 (2018)
11. 11.
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    Alseekh, S.; Fernie, A. R.: Metabolomics 20years on: what have we learned and what hurdles remain? The Plant Journal 94 (6), pp. 933 - 942 (2018)
12. 12.
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    Andersson, M.; Turesson, H.; Arrivault, S.; Zhang, Y.; Fält, A.-S.; Fernie, A. R.; Hofvander, P.: Inhibition of plastid PPase and NTT leads to major changes in starch and tuber formation in potato. Journal of Experimental Botany 69 (8), pp. 1913 - 1924 (2018)
13. 13.
    MPG.PuRe

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    Arif, M.A.; Alseekh, S.; Harb, J.; Fernie, A. R.; Frank, W.: Abscisic acid, cold and salt stimulate conserved metabolic regulation in the moss Physcomitrella patens. Plant Biology 20 (6), pp. 1014 - 1022 (2018)
14. 14.
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    Avin-Wittenberg, T.; Baluška, F.; Bozhkov, P.V.; Elander, P.H.; Fernie, A. R.; Galili, G.; Hassan, A.; Hofius, D.; Isono, E.; Le Bars, R. et al.; Masclaux-Daubresse, C.; Minina, E.A.; Peled-Zehavi, H.; Coll, N.S.; Sandalio, L.M.; Satiat-Jeunemaitre, B.; Sirko, A.; Testillano, P.S.; Batoko, H.: Autophagy-related approaches for improving nutrient use efficiency and crop yield protection. Journal of Experimental Botany 69 (6), pp. 1335 - 1353 (2018)
15. 15.
    MPG.PuRe

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    Avin-Wittenberg, T.; Baluska, F.; Bozhkov, P. V.; Elander, P. H.; Fernie, A. R.; Galili, G.; Hassan, A.; Hofius, D.; Isono, E.; Le Bars, R. et al.; Masclaux-Daubresse, C.; Minina, E. A.; Peled-Zehavi, H.; Coll, N. S.; Sandalio, L. M.; Satiat-Jeunemaitre, B.; Sirko, A.; Testillano, P. S.; Batoko, H.: Corrigendum: Autophagy-related approaches for improving nutrient use efficiency and crop yield protection. Journal of Experimental Botany 69 (12), p. 3173 - 3173 (2018)
16. 16.
    MPG.PuRe

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    Basler, G.; Fernie, A. R.; Nikoloski, Z.: Advances in metabolic flux analysis toward genome-scale profiling of higher organisms. Bioscience Reports 38 (6), 6 (2018)
17. 17.
    MPG.PuRe

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    Bermúdez, L.; Del Pozo, T.; Silvestre Lira, B.; de Godoy, F.; Boos, I.; Romanò, C.; Previtali, V.; Almeida, J.; Bréhélin, C.; Asis, R. et al.; Quadrana, L.; Demarco, D.; Alseekh, S.; Salinas Gamboa, R.; Pérez-Flores, L.; Dominguez, P.G.; Rothan, C.; Fernie, A. R.; González, M.; Stocker, A.; Hemmerle, A.; Clausen, M.H.; Carrari, F.; Rossi, M.: A Tomato Tocopherol-Binding Protein Sheds Light on Intracellular α-Tocopherol Metabolism in Plants. Plant and Cell Physiology 59 (11), pp. 2188 - 2203 (2018)
18. 18.
    MPG.PuRe

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    Borghi, M.; Xie, D.-Y.: Cloning and characterization of a monoterpene synthase gene from flowers of Camelina sativa. Planta 247 (2), pp. 443 - 457 (2018)
19. 19.
    MPG.PuRe

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    Bustamante, C. A.; Brotman, Y.; Monti, L. L.; Gabilondo, J.; Budde, C. O.; Lara, M. V.; Fernie, A. R.; Drincovich, M. F.: Differential lipidome remodeling during postharvest of peach varieties with different susceptibility to chilling injury. Physiologia Plantarum 163 (1), pp. 2 - 17 (2018)
20. 20.
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    Cavalcanti, J.H.F.; Kirma, M.; Barros, J.A.S.; Quinhones, C.G.S.; Pereira-Lima, Í.; Obata, T.; Nunes-Nesi, A.; Galili, G.; Fernie, A. R.; Avin-Wittenberg, T. et al.; Araújo, W.L.: An L,L-diaminopimelate aminotransferase mutation leads to metabolic shifts and growth inhibition in Arabidopsis. Journal of Experimental Botany 69 (22), pp. 5489 - 5506 (2018)
21. 21.
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    Chen, J.; Wang, J.; Chen, W.; Sun, W.; Peng, M.; Yuan, Z.; Shen, S.; Xie, K.; Jin, C.; Sun, Y. et al.; Liu, X.; Fernie, A. R.; Yu, S.; Luo, J.: Metabolome Analysis of Multi-Connected Biparental Chromosome Segment Substitution Line Populations. Plant Physiology 178 (2), pp. 612 - 625 (2018)
22. 22.
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    Cubillos, A.; Tong, H.; Alseekh, S.; de Abreu e Lima, F.; Yu, J.; Fernie, A. R.; Nikoloski, Z.; Laitinen, R.: Inheritance patterns in metabolism and growth in diallel crosses of Arabidopsis thaliana from a single growth habitat. Heredity 120, pp. 463 - 473 (2018)
23. 23.
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    Cui, X.; Wang, Y.; Ren, Y.; Fernie, A. R.; Alseekh, S.; He, H.; Gong, G.; Zhang, H.; Guo, S.; Zhang, J. et al.; Xu, Y.: Variance analysis of metabolite components between low sugar wild and high sugar cultivated watermelon fruits. Acta Horticulturae Sinica 45 (4), pp. 775 - 783 (2018)
24. 24.
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    de Oliveira Silva, F. M.; Lichtenstein, G.; Alseekh, S.; Rosado-Souza, L.; Conte, M.; Suguiyama, V. F.; Lira, B. S.; Fanourakis, D.; Usadel, B.; Bhering, L. L. et al.; DaMatta, F. M.; Sulpice, R.; Araújo, W. L.; Rossi, M.; de Setta, N.; Fernie, A. R.; Carrari, F.; Nunes-Nesi, A.: The genetic architecture of photosynthesis and plant growth-related traits in tomato. Plant, Cell and Environment 41 (2), pp. 327 - 341 (2018)
25. 25.
    MPG.PuRe

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    Del-Saz, N. F.; Ribas-Carbo, M.; McDonald, A. E.; Lambers, H.; Fernie, A. R.; Florez-Sarasa, I. D.: An In Vivo Perspective of the Role(s) of the Alternative Oxidase Pathway. Trends in Plant Science 23 (3), pp. 206 - 219 (2018)
26. 26.
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    Durgud, M.; Gupta, S.; Ivanov, I.; Omidbakhshfard, M. A.; Benina, M.; Alseekh, S.; Staykov, N.; Hauenstein, M.; Dijkwel, P. P.; Hortensteiner, S. et al.; Toneva, V.; Brotman, Y.; Fernie, A. R.; Mueller-Roeber, B.; Gechev, T. S.: Molecular Mechanisms Preventing Senescence in Response to Prolonged Darkness in a Desiccation-Tolerant Plant. Plant Physiology 177 (3), pp. 1319 - 1338 (2018)
27. 27.
    MPG.PuRe

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    El Aou-ouad, H.; Bota, J.; Obata, T.; Montero, R.; Fernie, A. R.; Medrano, H.; Pou, A.; Florez-Sarasa, I. D.: Combined drought and virus infection trigger aspects of respiratory metabolism related to grapevine physiological responses. Journal of Plant Physiology 231, pp. 19 - 30 (2018)
28. 28.
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    Fernandez Del-Saz, N.; Romero-Munar, A.; Cawthray, G. R.; Palma, F.; Aroca, R.; Baraza, E.; Florez-Sarasa, I. D.; Lambers, H.; Ribas-Carbo, M.: Phosphorus concentration coordinates a respiratory bypass, synthesis and exudation of citrate, and the expression of high-affinity phosphorus transporters in Solanum lycopersicum. Plant, Cell and Environment 41 (4), pp. 865 - 875 (2018)
29. 29.
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    Fernie, A. R.; Alseekh, S.: Defining the convergence of ethylene and auxin signaling in tomato. New Phytologist 219 (2), pp. 479 - 481 (2018)
30. 30.
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    Fernie, A. R.; Zhang, Y.; Sweetlove, L. J.: Passing the Baton: Substrate Channelling in Respiratory Metabolism. Research (2018)
31. 31.
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    Gakiere, B.; Fernie, A. R.; Petriacq, P.: More to NAD(+) than meets the eye: A regulator of metabolic pools and gene expression in Arabidopsis. Free Radical Biology and Medicine 122, pp. 86 - 95 (2018)
32. 32.
    MPG.PuRe

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    Garbowicz, K.; Liu, Z.; Alseekh, S.; Tieman, D.; Taylor, M.; Kuhalskaya, A.; Ofner, I.; Zamir, D.; Klee, H. J.; Fernie, A. R. et al.; Brotman, Y.: Quantitative Trait Loci Analysis Identifies a Prominent Gene Involved in the Production of Fatty Acid-Derived Flavor Volatiles in Tomato. Molecular Plant 11 (9), pp. 1147 - 1165 (2018)
33. 33.
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    Gupta, K. J.; Kumari, A.; Florez-Sarasa, I. D.; Fernie, A. R.; Igamberdiev, A. U.: Interaction of nitric oxide with the components of the plant mitochondrial electron transport chain. Journal of Experimental Botany 69 (14 -SI), pp. 3413 - 3424 (2018)
34. 34.
    MPG.PuRe

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    Heyneke, E.; Fernie, A. R.: Metabolic regulation of photosynthesis. Biochemical Society Transactions 46 (2), pp. 321 - 328 (2018)
35. 35.
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    Hsueh, Y.-C.; Nicolaisen, K.; Gross, L.E.; Nöthen, J.; Schauer, N.; Vojta, L.; Ertel, F.; Koch, I.; Ladig, R.; Fulgosi, H. et al.; Fernie, A. R.; Schleiff, E.: The outer membrane Omp85-like protein P39 influences metabolic homeostasis in mature Arabidopsis thaliana. Plant Biology 20 (5), pp. 825 - 833 (2018)
36. 36.
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    Huang, L.; Pyc, M.; Alseekh, S.; McCarty, D. R.; de Crecy-Lagard, V.; Gregory III, J. F.; Henry, C. S.; Fernie, A. R.; Mullen, R. T.; Hanson, A. D.: A plastidial pantoate transporter with a potential role in pantothenate synthesis. Biochemical Journal 475, pp. 813 - 825 (2018)
37. 37.
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    Inostroza-Blancheteau, C.; de Oliveira Silva, F.M.; Durán, F.; Solano, J.; Obata, T.; Machado, M.; Fernie, A. R.; Reyes-Díaz, M.; Nunes-Nesi, A.: Metabolic diversity in tuber tissues of native Chiloé potatoes and commercial cultivars of Solanum tuberosum ssp. tuberosum L. Metabolomics 14 (10), 138 (2018)
38. 38.
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    Kamranfar, I.; Xue, G.-P.; Tohge, T.; Sedaghatmehr, M.; Fernie, A. R.; Balazadeh, S.; Mueller-Roeber, B.: Transcription factor RD26 is a key regulator of metabolic reprogramming during dark-induced senescence. New Phytologist 218 (4), pp. 1543 - 1557 (2018)
39. 39.
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    Kong, F.; Burlacot, A.; Liang, Y.; Legeret, B.; Alseekh, S.; Brotman, Y.; Fernie, A. R.; Krieger-Liszkay, A.; Beisson, F.; Peltier, G. et al.; Li-Beisson, Y.: Interorganelle Communication: Peroxisomal MALATE DEHYDROGENASE2 Connects Lipid Catabolism to Photosynthesis through Redox Coupling in Chlamydomonas. Plant Cell 30 (8), pp. 1824 - 1847 (2018)
40. 40.
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    Kou, S.; Chen, L.; Tu, W.; Scossa, F.; Wang, Y.; Liu, J.; Fernie, A. R.; Song, B.; Xie, C.: The arginine decarboxylase gene ADC1, associated to the putrescine pathway, plays an important role in potato cold-acclimated freezing tolerance as revealed by transcriptome and metabolome analyses. The Plant Journal 96 (6), pp. 1283 - 1298 (2018)
41. 41.
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    Lima, V. F.; Medeiros, D.B.; Anjos, L. D.; Gago, J.; Fernie, A. R.; Daloso, D. M.: Toward multifaceted roles of sucrose in the regulation of stomatal movement. Plant Signaling & Behavior 0 (0), pp. 1 - 8 (2018)
42. 42.
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    Lorenz, C.; Brandt, S.; Borisjuk, L.; Rolletschek, H.; Heinzel, N.; Tohge, T.; Fernie, A. R.; Braun, H.-P.; Hildebrandt, T. M.: The Role of Persulfide Metabolism During Arabidopsis Seed Development Under Light and Dark Conditions. Frontiers in Plant Science (2018)
43. 43.
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    Ma, X.; Zhang, Y.; Tureckova, V.; Xue, G.-P.; Fernie, A. R.; Mueller-Roeber, B.; Balazadeh, S.: The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiology 177 (3), pp. 1286 - 1302 (2018)
44. 44.
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    Medeiros, D.B.; Fernie, A. R.; Araujo, W. L.: Discriminating the Function(s) of Guard Cell ALMT Channels. Trends in Plant Science 23 (8), pp. 649 - 651 (2018)
45. 45.
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    Medeiros, D.B.; de Souza, L. P.; Antunes, W. C.; Araujo, W. L.; Daloso, D. M.; Fernie, A. R.: Sucrose breakdown within guard cells provides substrates for glycolysis and glutamine biosynthesis during light-induced stomatal opening. The Plant Journal 94 (4), pp. 583 - 594 (2018)
46. 46.
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    Monné, M.; Daddabbo, L.; Gagneul, D.; Obata, T.; Hielscher, B.; Palmieri, L.; Miniero, D. V.; Fernie, A. R.; Weber, A. P. M.; Palmieri, F.: Uncoupling proteins 1 and 2 (UCP1 and UCP2) from Arabidopsis thaliana are mitochondrial transporters of aspartate, glutamate, and dicarboxylates. The Journal of Biological Chemistry 293 (11), pp. 4213 - 4227 (2018)
47. 47.
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    Nietzsche, M.; Guerra, T.; Alseekh, S.; Wiermer, M.; Sonnewald, S.; Fernie, A. R.; Börnkea, F.: STOREKEEPER RELATED1/G-element binding protein (STKR1) interacts with protein kinase SnRK1. Plant Physiology 176 (2), pp. 1773 - 1792 (2018)
48. 48.
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    Omidbakhshfard, M. A.; Fujikura, U.; Olas, J. J.; Xue, G.-P.; Balazadeh, S.; Mueller-Roeber, B.: GROWTH-REGULATING FACTOR 9 negatively regulates arabidopsis leaf growth by controlling ORG3 and restricting cell proliferation in leaf primordia. PLoS Genetics 14 (7), e1007484 (2018)
49. 49.
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    Rabêlo, F. H. S.; Fernie, A. R.; Navazas, A.; Borgo, L.; Keunen, E.; de da Silva, B. K. A.; Cuypers, A.; Lavres, J.: A glimpse into the effect of sulfur supply on metabolite profiling, glutathione and phytochelatins in Panicum maximum cv. Massai exposed to cadmium. Environmental and Experimental Botany 151, pp. 76 - 88 (2018)
50. 50.
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    Rosa-Tellez, S.; Djoro Anoman, A.; Flores-Tornero, M.; Toujani, W.; Alseekh, S.; Fernie, A. R.; Nebauer, S. G.; Munoz-Bertomeu, J.; Segura, J.; Ros, R.: Phosphoglycerate Kinases Are Co-Regulated to Adjust Metabolism and to Optimize Growth. Plant Physiology 176 (2), pp. 1182 - 1198 (2018)