Publications of the Group

Journal Article (11)

Journal Article
Caldana, C.; Scheible, W.-R.; Mueller-Roeber, B.; Ruzicic, S.: A quantitative RT-PCR platform for high-throughput expression profiling of 2500 rice transcription factors. Plant Methods 3, p. 7 (2007)
Journal Article
Hannah, M. A.; Kraemer, K. M.; Geffroy, V.; Kopka, J.; Blair, M. W.; Erban, A.; Vallejos, C. E.; Heyer, A. G.; Sanders, F. E.; Millner, P. A. et al.; Pilbeam, D. J.: Hybrid weakness controlled by the dosage-dependent lethal (DL) gene system in common bean (Phaseolus vulgaris) is caused by a shoot-derived inhibitory signal leading to salicylic acid-associated root death. New Phytologist 176 (3), pp. 537 - 549 (2007)
Journal Article
Huege, J.; Sulpice, R.; Gibon, Y.; Lisec, J.; Koehl, K. I.; Kopka, J.: GC-EI-TOF-MS analysis of in vivo carbon-partitioning into soluble metabolite pools of higher plants by monitoring isotope dilution after 13CO2 labelling. Phytochemistry 68 (16-18), pp. 2258 - 2272 (2007)
Journal Article
Hummel, J.; Niemann, M.; Wienkoop, S.; Schulze, W.; Steinhauser, D.; Selbig, J.; Walther, D.; Weckwerth, W.: ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites. BMC Bioinformatics 8, p. 216 (2007)
Journal Article
Meyer, R. C.; Steinfath, M.; Lisec, J.; Becher, M.; Witucka-Wall, H.; Torjek, O.; Fiehn, O.; Eckardt, A.; Willmitzer, L.; Selbig, J. et al.; Altmann, T.: The metabolic signature related to high plant growth rate in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America 104 (11), pp. 4759 - 4764 (2007)
Journal Article
Nebrich, G.; Herrmann, M.; Sagi, D.; Klose, J.; Giavalisco, P.: High MS-compatibility of silver nitrate-stained protein spots from 2-DE gels using ZipPlates and AnchorChips for successful protein identification. Electrophoresis 28 (10), pp. 1607 - 1614 (2007)
Journal Article
Osuna, D.; Usadel, B.; Morcuende, R.; Gibon, Y.; Blaesing, O. E.; Hoehne, M.; Gunter, M.; Kamlage, B.; Trethewey, R.; Scheible, W.-R. et al.; Stitt, M.: Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings. Plant Journal 49 (3), pp. 463 - 491 (2007)
Journal Article
Redestig, H.; Weicht, D.; Selbig, J.; Hannah, M. A.: Transcription factor target prediction using multiple short expression time series from Arabidopsis thaliana. BMC Bioinformatics 8, p. 454 (2007)
Journal Article
Schenk, N.; Schelbert, S.; Kanwischer, M.; Goldschmidt, E. E.; Doermann, P.; Hortensteiner, S.: The chlorophyllases AtCLH1 and AtCLH2 are not essential for senescence-related chlorophyll breakdown in Arabidopsis thaliana. FEBS Letters 581 (28), pp. 5517 - 5525 (2007)
Journal Article
Skirycz, A.; Jozefczuk, S.; Stobiecki, M.; Muth, D.; Zanor, M. I.; Witt, I.; Mueller-Roeber, B.: Transcription factor AtDOF4;2 affects phenylpropanoid metabolism in Arabidopsis thaliana. New Phytologist 175 (3), pp. 425 - 438 (2007)
Journal Article
Szymanski, J.; Bielecka, M.; Carrari, F.; Fernie, A. R.; Hoefgen, R.; Nikiforova, V. J.: On the processing of metabolic information through metabolite-gene communication networks: an approach for modelling causality. Phytochemistry 68 (16-18), pp. 2163 - 2175 (2007)

Book Chapter (3)

Book Chapter
Nikiforova, V. J.; Willmitzer, L.: Network visualization and network analysis. In: Plant Systems Biology, pp. 245 - 275. Birkhäuser Verlag, Basel, SUI (2007)
Book Chapter
Steinhauser, D.; Kopka, J.: Methods, applications and concepts of metabolite profiling: primary metabolism. In: Plant Systems Biology, pp. 171 - 194 (Eds. Baginsky, S.; Fernie, A. R.). Verlag Birkhäuser, Basel, SUI (2007)
Book Chapter
Urbanczyk-Wochniak, E.; Willmitzer, L.; Fernie, A. R.: Integrating profiling data: using linear correlation to reveal coregulation of transcript and metabolites. In: Metabolomics: Methods and Protocols, pp. 77 - 85 (Ed. Weckwerth, W.). Humana Press Inc., Totowa, NJ, USA (2007)

Conference Paper (1)

Conference Paper
Willmitzer, L.; Caldana, C.; Fernie, A. R.; Giavalisco, P.; MA, H.; Redestig, H.; Steinhauser, D.: Integrative Analysis of Transcriptome and Metabolome Data. In: Proceedings of the German Conference on Bioinformatics, Vol. 01. Proceedings of the German Conference on Bioinformatics, GCB 2007, Potsdam, Germany, September 26, 2007 - September 28, 2007. (2007)

Meeting Abstract (1)

Meeting Abstract
Willmitzer, L.: Small molecules, genes and complex traits. In FEBS Journal, 274, p. 64 - 64. (2007)
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