Publications of the Group

Journal Article (316)

1.
Journal Article
Shi, Z.; Li, H.; Zhang, W.; Chen, Y.; Zeng, C.; Kang, X.; Xu, X.; Xia, Z.; Qing, B.; Yuan, Y. et al.; Song, G.; Caldana, C.; Hu, J.; Willmitzer, L.; Li, Y.: A Comprehensive Mass Spectrometry-Based Workflow for Clinical Metabolomics Cohort Studies. Metabolites 12 (12), 1168 (2022)
2.
Journal Article
Kosmacz, M.; Kerber, O.; Gorka, M.; Moreno, J.C.; Maruri-Lopez, I.; Minen, R.; Sampathkumar, A.; Nelson, A.; Skirycz, A.: 2 ',3 '-cAMP treatment mimics the stress molecular response in Arabidopsis thaliana. Plant Physiology 188 (4), pp. 1966 - 1978 (2022)
3.
Journal Article
Mi, J.; Vallarino, J. G.; Petřík, I.; Novák, O.; Correa, S. M.; Kosmacz, M.; Havaux, M.; Rodriguez-Concepcion, M.; Al-Babili, S.; Fernie, A. R. et al.; Skirycz, A.; Moreno, J.C.: A manipulation of carotenoid metabolism influence biomass partitioning and fitness in tomato. Metabolic Engineering 70, pp. 166 - 180 (2022)
4.
Journal Article
Schlossarek, D.; Luzarowski, M.; Sokolowska, E.; Thirumalaikumar, V. P.; Dengler, L.; Willmitzer, L.; Ewald, J. C.; Skirycz, A.: Rewiring of the protein–protein–metabolite interactome during the diauxic shift in yeast. Cellular and Molecular Life Sciences 79 (11), 550 (2022)
5.
Journal Article
Calderan-Rodrigues, M.J.; Luzarowski, M.; Monte Bello, C.C.; Minen, R.I.; Zühlke, B. M.; Nikoloski, Z.; Skirycz, A.; Caldana, C.: Proteogenic Dipeptides Are Characterized by Diel Fluctuations and Target of Rapamycin Complex-Signaling Dependency in the Model Plant Arabidopsis thaliana. Frontiers in Plant Science 12, 758933 (2021)
6.
Journal Article
Zhu, F.; Alseekh, S.; Wen, W.; Cheng, Y.; Fernie, A. R.: Genome-wide association studies of Arabidopsis dark-induced senescence reveals signatures of autophagy in metabolic reprogramming. Autophagy 18 (2), pp. 457 - 458 (2021)
7.
Journal Article
Machado, M.; Vaz, M. G. M. V.; Bromke, M. A.; Rosa, R. M.; Covell, L.; de Souza, L. P.; Rocha, D. I.; Martins, M. A.; Araújo, W. L.; Szymański, J. et al.; Nunes-Nesi, A.: Metabolic stability of freshwater Nitzschia palea strains under silicon stress associated with triacylglycerol accumulation. Algal Research 60, 102554 (2021)
8.
Journal Article
Omini, J.; Wojciechowska, I.; Skirycz, A.; Moriyama, H.; Obata, T.: Association of the malate dehydrogenase-citrate synthase metabolon is modulated by intermediates of the Krebs tricarboxylic acid cycle. Scientific Reports 11 (1), 18770 (2021)
9.
Journal Article
Schlossarek, D.; Luzarowski, M.; Sokolowska, E.; Gorka, M.; Willmitzer, L.; Skirycz, A.: PROMISed: A novel web-based tool to facilitate analysis and visualization of the molecular interaction networks from co-fractionation mass spectrometry (CF-MS) experiments. Computational and Structural Biotechnology Journal 19, pp. 5117 - 5125 (2021)
10.
Journal Article
Moreno, J.C.; Rojas, B.E.; Vicente, R.; Gorka, M.; Matz, T.; Kosmacz, M.; Peralta-Ariza, J.S.; Zhang, Y.; Alseekh, S.; Childs, D. et al.; Luzarowski, M.; Nikoloski, Z.; Zarivach, R.; Walther, D.; Hartman, M.D.; Figueroa, C.M.; Iglesias, A.A.; Fernie, A. R.; Skirycz, A.: Tyr-Asp inhibition of glyceraldehyde 3-phosphate dehydrogenase affects plant redox metabolism. EMBO Journal, e106800 (2021)
11.
Journal Article
Caroca, R.; Howell, K. A.; Malinova, I.; Burgos, A.; Tiller, N.; Pellizzer, T.; Annunziata, M. G.; Hasse, C.; Ruf, S.; Karcher, D. et al.; Bock, R.: Knock-down of the plastid-encoded acetyl-CoA carboxylase gene uncovers functions in metabolism and development. Plant Physiology 185 (3), pp. 1091 - 1110 (2021)
12.
Journal Article
Luzarowski, M.; Vicente, R.; Kiselev, A.; Wagner, M.; Schlossarek, D.; Erban, A.; de Souza, L. P.; Childs, D.; Wojciechowska, I.; Luzarowska, U. et al.; Gorka, M.; Sokolowska, E.; Kosmacz, M.; Moreno, J.C.; Brzezinska, A.; Vegesna, B.; Kopka, J.; Fernie, A. R.; Willmitzer, L.; Ewald, J. C.; Skirycz, A.: Global mapping of protein–metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity. Communications Biology 4 (1), 181 (2021)
13.
Journal Article
Martín-Pizarro, C.; Vallarino, J. G.; Osorio, S.; Meco, V.; Urrutia, M.; Pillet, J.; Casañal, A.; Merchante, C.; Amaya, I.; Willmitzer, L. et al.; Fernie, A. R.; Giovannoni, J. J.; Botella, M. A.; Valpuesta, V.; Posé, D.: The NAC transcription factor FaRIF controls fruit ripening in strawberry. The Plant Cell 33 (5), pp. 1574 - 1593 (2021)
14.
Journal Article
Uflewski, M.; Mielke, S.; Correa Galvis, V.; von Bismarck, T.; Chen, X.; Tietz, E.; Ruß, J.; Luzarowski, M.; Sokolowska, E.; Skirycz, A. et al.; Eirich, J.; Finkemeier, I.; Schöttler, M. A.; Armbruster, U.: Functional characterization of proton antiport regulation in the thylakoid membrane. Plant Physiology 187 (4), pp. 2209 - 2229 (2021)
15.
Journal Article
Cerda, A.; Moreno, J.C.; Acosta, D.; Godoy, F.; Cáceres, J. C.; Cabrera, R.; Stange, C.: Functional characterization and in silico modelling of MdPSY2 variants and MdPSY5 phytoene synthases from Malus domestica. Journal of Plant Physiology 249, 153166 (2020)
16.
Journal Article
Chodasiewicz, M.; Sokolowska, E.; Nelson-Dittrich, A. C.; Masiuk, A.; Moreno, J.C.; Nelson, A. D. L.; Skirycz, A.: Identification and Characterization of the Heat-Induced Plastidial Stress Granules Reveal New Insight Into Arabidopsis Stress Response. Frontiers in Plant Science 11, 597592 (2020)
17.
Journal Article
Cuadros-Inostroza, Á.; Verdugo-Alegría, C.; Willmitzer, L.; Moreno-Simunovic, Y.; Vallarino, J. G.: Non-Targeted Metabolite Profiles and Sensory Properties Elucidate Commonalities and Differences of Wines Made with the Same Variety but Different Cultivar Clones. Metabolites 10 (6), E220 (2020)
18.
Journal Article
Kosmacz, M.; Skirycz, A.: The Isolation of Stress Granules From Plant Material. Current Protocols in Plant Biology 5 (3), e20118 (2020)
19.
Journal Article
Kosmacz, M.; Sokolowska, E.; Bouzaa, S.; Skirycz, A.: Towards a functional understanding of the plant metabolome. Current Opinion in Plant Biology 55, pp. 47 - 51 (2020)
20.
Journal Article
Moreno, J.C.; Mi, J.; Agrawal, S.; Kössler, S.; Turečková, V.; Tarkowská, D.; Thiele, W.; Al-Babili, S.; Bock, R.; Schöttler, M. A.: Expression of a carotenogenic gene allows faster biomass production by redesigning plant architecture and improving photosynthetic efficiency in tobacco. The Plant Journal 103 (6), pp. 1967 - 1984 (2020)
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