Publications of J. Selbig

Daub, C. O., Steuer, R., Selbig, J. & Kloska, S. Estimating mutual information using B-spline functions - an improved similarity measure for analysing gene expression data. BMC Bioinformatics 5, 118 (2004).

Gibon, Y., Blaesing, O. E., Hannemann, J., Carillo, P., Hoehne, M., Hendriks, J. H. M., Palacios, N., Cross, J., Selbig, J. & Stitt, M. A robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: Comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness. Plant Cell 16, 3304–3325 (2004).

Luedemann, A., Weicht, D., Selbig, J. & Kopka, J. PaVESy: Pathway visualization and editing system. Bioinformatics 20, 2841–2844 (2004).

Scholz, M., Gatzek, S., Sterling, A., Fiehn, O. & Selbig, J. Metabolite fingerprinting: detecting biological features by independent component analysis. Bioinformatics 20, 2447–2454 (2004).

Steinhauser, D., Junker, B. H., Luedemann, A., Selbig, J. & Kopka, J. Hypothesis-driven approach to predict transcriptional units from gene expression data. Bioinformatics 20, 1928–1939 (2004).

Thimm, O., Blaesing, O., Gibon, Y., Nagel, A., Meyer, S., Krueger, P., Selbig, J., Mueller, L. A., Rhee, S. Y. & Stitt, M. MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant Journal 37, 914–939 (2004).

Beerenwinkel, N., Daumer, M., Oette, M., Korn, K., Hoffmann, D., Kaiser, R., Lengauer, T., Selbig, J. & Walter, H. Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes. Nucleic Acids Research 31, 3850–3855 (2003).

Beerenwinkel, N., Lengauer, T., Daumer, M., Kaiser, R., Walter, H., Korn, K., Hoffmann, D. & Selbig, J. Methods for optimizing antiviral combination therapies. Bioinformatics 19 Suppl. 1, I16–I25 (2003).

Daub, C. O., Kloska, S. & Selbig, J. MetaGeneAlyse: analysis of integrated transcriptional and metabolite data. Bioinformatics 19, 2332–2333 (2003).

Urbanczyk-Wochniak, E., Luedemann, A., Kopka, J., Selbig, J., Roessner-Tunali, U., Willmitzer, L. & Fernie, A. R. Parallel analysis of transcript and metabolic profiles: a new approach in systems biology. EMBO Reports 4, 989–993 (2003).

Weckwerth, W. & Selbig, J. Scoring and identifying organism-specific functional patterns and putative phosphorylation sites in protein sequences using mutual information. Biochemical and Biophysical Research Communications 307, 516–521 (2003).

Wolf, K., Walter, H., Beerenwinkel, N., Keulen, W., Kaiser, R., Hoffmann, D., Lengauer, T., Selbig, J., Vandamme, A.-M., Korn, K. & Schmidt, B. Tenofovir resistance and resensitization. Antimicrobial Agents and Chemotherapy 47, 3478–3484 (2003).

Beerenwinkel, N., Schmidt, B., Walter, H., Kaiser, R., Lengauer, T., Hoffmann, D., Korn, K. & Selbig, J. Diversity and complexity of HIV-1 drug resistance: A bioinformatics approach to predicting phenotype from genotype. Proceedings of the National Academy of Sciences of the United States of America 99, 8271–8276 (2002).

Wickert, L. & Selbig, J. Structural analysis of the DNA-binding domain of alternatively spliced steroid receptors. Journal of Endocrinology 173, 429–436 (2002).

Beerenwinkel, N., Lengauer, T., Selbig, J., Schmidt, B., Walter, H., Korn, K., Kaiser, R. & Hoffmann, D. Geno2pheno: Interpreting genotypic HIV drug resistance tests. IEEE Intelligent Systems 16, 35–41 (2001).

Wickert, L., Selbig, J., Watzka, M., Stoffel-Wagner, B., Schramm, J., Bidlingmaier, F. & Ludwig, M. Differential mRNA expression of the two mineralocorticoid receptor splice variants within the human brain: Structure analysis of their different DNA binding domains. Journal of Neuroendocrinology 12, 867–873 (2000).

Selbig, J., Mevissen, T. & Lengauer, T. Decision free-based formation of consensus protein secondary structure prediction. Bioinformatics 15, 1039–1046 (1999).

Hartmann, S. & Selbig, J. Introductory Bioinformatics. (Books on Demand, 2009). at <http://hdl.handle.net/11858/00-001M-0000-0014-25BA-5>

Groth, D., Hartmann, S., Klie, S. & Selbig, J. in Methods in Molecular Biology 930, 527–547 (2013).

Redestig, H., Szymanski, J., Hirai, M. Y., Selbig, J., Willmitzer, L., Saito, K. & Nikoloski, Z. in Biology of Plant Metabolomics (ed. Hall, R. D.) (Wiley-Blackwell, 2011). doi:10.1002/9781444339956.ch9