Publications of F. Zhu

Journal Article (13)

1.
Journal Article
Naake, T.; Zhu, F.; Alseekh, S.; Scossa, F.; de Souza, L. P.; Borghi, M.; Brotman, Y.; Mori, T.; Nakabayashi, R.; Tohge, T. et al.; Fernie, A. R.: Genome-wide association studies identify loci controlling specialized seed metabolites in Arabidopsis. Plant Physiology 194 (3), pp. 1705 - 1721 (2024)
2.
Journal Article
Vicente, M. H.; MacLeod, K.; Zhu, F.; Rafael, D. D.; Figueira, A.; Fernie, A. R.; Mohareb, F.; Kevei, Z.; Thompson, A. J.; Zsögön, A. et al.; Peres, L. E. P.: The ORGAN SIZE (ORG) locus modulates both vegetative and reproductive gigantism in domesticated tomato. Annals of Botany 132 (7), pp. 1233 - 1248 (2023)
3.
Journal Article
Cerqueira, J. V. A.; de Andrade; T., M.; Rafael, D. D.; Zhu, F.; Martins, S. V. C.; Nunes-Nesi, A.; Benedito, V.; Fernie, A. R.; Zsögön, A.: Anthocyanins and reactive oxygen species: a team of rivals regulating plant development? Plant Molecular Biology 112, pp. 213 - 223 (2023)
4.
Journal Article
Luzarowska, U.; Ruß, A.-K.; Joubès, J.; Batsale, M.; Szymański, J.; Thirumalaikumar, V. P.; Luzarowski, M.; Wu, S.; Zhu, F.; Endres, N. et al.; Khedhayir, S.; Schumacher, J.; Jasinska, W.; Xu, K.; Cordoba, S. M. C.; Weil, S.; Skirycz, A.; Fernie, A. R.; Li-Beisson, Y.; Fusari, C. M.; Brotman, Y.: Hello darkness, my old friend: 3-KETOACYL-COENZYME A SYNTHASE4 is a branch point in the regulation of triacylglycerol synthesis in Arabidopsis thaliana. The Plant Cell 35 (6), pp. 1984 - 2005 (2023)
5.
Journal Article
Cerqueira, J. V. A.; Zhu, F.; Mendes, K.; Nunes-Nesi, A.; Martins, S. C. V.; Benedito, V.; Fernie, A. R.; Zsögön, A.: Promoter replacement of ANTHOCYANIN1 induces anthocyanin accumulation and triggers shade avoidance response through developmental, physiological and metabolic reprogramming in tomato. Horticulture Research 10 (2), uhac254 (2023)
6.
Journal Article
Zhu, F.; Sun, Y.; Jadhav, S. S.; Cheng, Y.; Alseekh, S.; Fernie, A. R.: The Plant Metabolic Changes and the Physiological and Signaling Functions in the Responses to Abiotic Stress. Methods in Molecular Biology 2642, pp. 129 - 150 (2023)
7.
Journal Article
Zhu, F.; Jadhav, S. S.; Tohge, T.; Salem, M. A.; Li, J. M.; Giovannoni, J. J.; Cheng, Y.; Alseekh, S.; Fernie, A. R.: A comparative transcriptomics and eQTL approach identifies SlWD40 as a tomato fruit ripening regulator. Plant Physiology 190 (1), pp. 250 - 266 (2022)
8.
Journal Article
Alseekh, S.; Zhu, F.; Vallarino, J. G.; Sokolowska, E.; Yoshida, T.; Bergmann, S.; Wendenburg, R.; Bolze, A.; Skirycz, A.; Avin-Wittenberg, T. et al.; Fernie, A. R.: Autophagy modulates the metabolism and growth of tomato fruit during development. Horticulture Research 9, uhac129 (2022)
9.
Journal Article
Zhu, F.; Wijesingha Ahchige, M.; Brotman, Y.; Alseekh, S.; Zsögön, A.; Fernie, A. R.: Bringing more players into play: Leveraging stress in genome wide association studies. Journal of Plant Physiology 271, 153657 (2022)
10.
Journal Article
Zhu, F.; Alseekh, S.; Wen, W.; Cheng, Y.; Fernie, A. R.: Genome-wide association studies of Arabidopsis dark-induced senescence reveals signatures of autophagy in metabolic reprogramming. Autophagy 18 (2), pp. 457 - 458 (2021)
11.
Journal Article
Zhu, F.; Alseekh, S.; Koper, K.; Tong, H.; Nikoloski, Z.; Naake, T.; Liu, H.; Yan, J.; Brotman, Y.; Wen, W. et al.; Maeda, H.; Cheng, Y.; Fernie, A. R.: Genome-wide association of the metabolic shifts underpinning dark-induced senescence in Arabidopsis. The Plant Cell 34 (1), pp. 557 - 578 (2021)
12.
Journal Article
Zhu, F.; Fernie, A. R.: Plants upcycle gene functions to suit their roots. Trends in Plant Science 26 (10), pp. 996 - 998 (2021)
13.
Journal Article
Zhu, F.; Wen, W.; Fernie, A. R.: Finding Noemi: The Transcription Factor Mutations Underlying Trait Differentiation Amongst Citrus. Trends in Plant Science 24 (5), pp. 384 - 386 (2019)

Book Chapter (2)

14.
Book Chapter
Zhu, F.; Bulut, M.; Cheng, Y.; Alseekh, S.; Fernie, A. R.: Metabolite-Based Genome-Wide Association Studies of Large-Scale Metabolome Analysis to Illustrate Alterations in the Metabolite Landscape of Plants upon Responses to Stresses. In: Methods in Molecular Biology, Vol. 2642, pp. 241 - 255 (2023)
15.
Book Chapter
Zhu, F.; Fernie, A. R.; Scossa, F.: Preparation and Curation of Omics Data for Genome-Wide Association Studies. In: Methods in Molecular Biology, Vol. 2481 (Eds. Torkamabeh, D.; Belzile, F.). Humana, New York, NY (2022)

Review Article (1)

16.
Review Article
Zhu, F.; Wen, W.; Cheng, Y.; Alseekh, S.; Fernie, A. R.: Integrating multiomics data accelerates elucidation of plant primary and secondary metabolic pathways. (2023)
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