Publications of Z. Nikoloski
All genres
Journal Article (190)
1.
Journal Article
13 (1), 5712 (2023)
The unraveling of balanced complexes in metabolic networks. Scientific Reports 2.
Journal Article
14 (1), 986 (2023)
Cross-stress gene expression atlas of Marchantia polymorpha reveals the hierarchy and regulatory principles of abiotic stress responses. Nature Communications 3.
Journal Article
5 (1), lqad008 (2023)
Self- and cross-attention accurately predicts metabolite–protein interactions. NAR: genomics and bioinformatics 4.
Journal Article
14, 1485 (2023)
Data integration across conditions improves turnover number estimates and metabolic predictions. Nature Communications 5.
Journal Article
14, 1977 (2023)
Light-independent regulation of algal photoprotection by CO2 availability. Nature Communications 6.
Journal Article
4, e4 (2023)
Heritability of temperature-mediated flower size plasticity in Arabidopsis thaliana. Quantitative Plant Biology 7.
Journal Article
Models and molecular mechanisms for trade-offs in the context of metabolism. Molecular Ecology (2023)
8.
Journal Article
7, 71 (2022)
CUBCO+: prediction of protein complexes based on min-cut network partitioning into biclique spanned subgraphs. Applied Network Science 9.
Journal Article
25 (11), 105411 (2022)
Temperature-mediated flower size plasticity in Arabidopsis. iScience 10.
Journal Article
Strategies to identify and dissect trade-offs in plants. Molecular Ecology (2022)
11.
Journal Article
23 (20), 12087 (2022)
Transcriptomic and Metabolomic Analysis of a Pseudomonas-Resistant versus a Susceptible Arabidopsis Accession. International Journal of Molecular Sciences 12.
Journal Article
111 (5), pp. 1486 - 1500 (2022)
An automated workflow that generates atom mappings for large scale metabolic models and its application to Arabidopsis thaliana. The Plant Journal 13.
Journal Article
12 (9), jkac170 (2022)
A comparative analysis of genomic and phenomic predictions of growth-related traits in 3-way coffee hybrids. G3: Genes, Genomes, Genetics 14.
Journal Article
149 (16), dev201024 (2022)
Topological properties accurately predict cell division events and organization of shoot apical meristem in Arabidopsis thaliana. Development 15.
Journal Article
20, pp. 3963 - 3971 (2022)
Relative flux trade-offs and optimization of metabolic network functionalities. Computational and Structural Biotechnology Journal 16.
Journal Article
149 (12), dev.200415 (2022)
Fluorescent cytoskeletal markers reveal associations between the actin and microtubule cytoskeleton in rice cells. Development 17.
Journal Article
8 (13), eabl6962 (2022)
The hidden simplicity of metabolic networks is revealed by multireaction dependencies. Science Advances 18.
Journal Article
9, uhac072 (2022)
Genomic prediction of morphometric and colorimetric traits in Solanaceous fruits. Horticulture Research 19.
Journal Article
18 (3), e1009906 (2022)
COMMIT: Consideration of metabolite leakage and community composition improves microbial community reconstructions. PLoS Computational Biology 20.
Journal Article
7 (1), e01216-21 (2022)
Genome-Scale Modeling Specifies the Metabolic Capabilities of Rhizophagus irregularis. mSystems