Publications of J. Kopka

Book Chapter (21)

Book Chapter
Luedemann, A.; von Malotky, L.; Erban, A.; Kopka, J.: TagFinder-preprocessing software for the fingerprinting and the profiling of gas chromatography-mass spectrometry (GC-MS) based metabolome analyses. In: Plant Metabolomics: Methods and Protocols, 2012/02/29 Ed., pp. 255 - 286 (Eds. Hardy, N. W.; Hall, R. D.). Humana Press Inc., Totowa, NJ, USA (2012)
Book Chapter
Schudoma, C.; Steinfath, M.; Sprenger, H.; van Dongen, J.; Hincha, D. K.; Zuther, E.; Geigenberger, P.; Kopka, J.; Koehl, K. I.; Walther, D.: Conducting molecular biomarker discovery studies in plants. In: High Throughput Phenotyping in Plants, 10 (Ed. Normanly, J.). Humana Press Inc., Totowa, NJ, USA (2012)
Book Chapter
Allwood, J. W.; De Vos, R. C.H.; Moing, A.; Deborde, C.; Erban, A.; Kopka, J.; Goodacre, R.; Hall, R. D.: Plant metabolomics and its potential for systems biology research: background concepts, technology and methodology. In: Methods in Enzymology, Vol. 500, pp. 299 - 336 (Eds. Jameson, D.; Verma, M.; Westerhoff, H.V.). Elsevier - Academic Press, Amsterdam, NED (2011)
Book Chapter
Kopka, J.; Walther, D.; Allwood, J. W.; Goodacre, R.: Progress in chemometrics and biostatistics for plant applications: Or a good red wine is a bad white wine. In: The biology of plant metabolomics, 10, 2011/05/03 Ed., pp. 317 - 342 (Ed. Hall, R. D.). Blackwell-Wiley, London, UK (2011)
Book Chapter
Erban, A.; Schauer, N.; Fernie, A. R.; Kopka, J.: Nonsupervised construction and application of mass spectral and retention time index libraries from time-of-flight gas chromatography-mass spectrometry metabolite profiles. In: Metabolomics: Methods and Protocols, pp. 19 - 38 (Ed. Weckwerth, W.). Humana Press Inc., Totowa, NJ, USA (2007)
Book Chapter
Hummel, J.; Selbig, J.; Walther, D.; Kopka, J.: The Golm Metabolome Database: a database for GC-MS based metabolite profiling. In: Metabolomics: A Powerful Tool in Systems Biology, pp. 75 - 95 (Eds. Nielsen, J.; Jewett, M.). Springer-Verlag, Berlin, Heidelberg, New York (2007)
Book Chapter
Steinhauser, D.; Kopka, J.: Methods, applications and concepts of metabolite profiling: primary metabolism. In: Plant Systems Biology, pp. 171 - 194 (Eds. Baginsky, S.; Fernie, A. R.). Verlag Birkhäuser, Basel, SUI (2007)
Book Chapter
Zuther, E.; Koehl, K. I.; Kopka, J.: Comparative metabolome analysis of the salt response in breeding cultivars of rice. In: Advances in molecular breeding toward drought and salt tolerant crops., pp. 285 - 315 (Eds. Jenks, M. A.; Hasegawa, P. M.; Jain, S. M.). Springer-Verlag, Berlin, Heidelberg, New York (2007)
Book Chapter
Kopka, J.: Gas chromatography mass spectrometry. In: Biotechnology in Agriculture and Forestry, pp. 3 - 20 (Eds. Nagata, T.; Lörz, H.; Widholm, J. M.; Dixon, R. A.; Willmitzer, L.). Springer-Verlag, Berlin, Heidelberg, New York (2006)
Book Chapter
Kopka, J.: Metabolomics: Comprehensive analysis of metabolism. In: Encyclopedic Reference of Genomics and Proteomics in Molecular Medicine (Eds. Ganten, D.; Ruckpaul, K.). Springer-Verlag, Berlin, Heidelberg (2006)
Book Chapter
Udvardi, M. K.; Ott, T.; Krusell, L.; Desbrosses, G.; Voroshilova, V.; Colebatch, G.; Wandrey, M.; Montanari, O.; Kakar, K.; Krause, K. et al.; Guenther, C.; van Dongen, J. T.; Vigeolas, H.; Geigenberger, P.; Kraemer, U.; Kloska, S.; Kopka, J.; Sato, S.; Nakamura, Y.; Tabata, S.; James, E. K.; Kawaguchi, M.; Miyamoto, A.; Suganuma, N.; Sandal, N.; Stougaard, J.: Insights into nodule physiology and metabolism from transcriptomics, metabolomics, bioinformatics, and genetics. In: Biology of plant-microbe interactions, Vol. 5, pp. 96 - 102 (Eds. Sánchez, F.; Quinto, C.; López-Lara, I. M.; Geiger, O.). ISMPMI, St. Paul, MN, USA (2006)
Book Chapter
Desbrosses, G.; Steinhauser, D.; Kopka, J.; Udvardi, M. K.: Lotus metabolome analysis using GC-MS. In: Lotus japonicus handbook, pp. 165 - 174 (Eds. Marquez, A. J.; Stougaard, J.; Udvardi, M.; Parniske, M.; Spaink, H. P. et al.). Kluwer, Dordrecht (2005)

Proceedings (1)

Metabolic, Transcriptional and Proteomic Profiling of Cold Response in Fragaria vesca. 6th International Strawberry Symposium, Huelva, SPAIN, 2009-08. (2009)

Conference Paper (5)

Conference Paper
Glaubitz, U.; Erban, A.; Kopka, J.; Hincha, D. K.; Zuther, E.: Metabolite Profiling Reveals Sensitivity-Dependent Metabolic Shifts in Rice (Oryza Sativa L.) Cultivars under High Night Temperature Stress. In: Agriculture and Climate Change - Adapting Crops to increased uncertainty (Agri 2015), p. 72 - 72. 4th International Conference on Agriculture and Horticulture (AGRI), Beijing, PEOPLES R CHINA, July 13, 2015 - July 15, 2015. (2015)
Conference Paper
Zuther, E.; Li, X.; Lawas, L. M. F.; Malo, R.; Glaubitz, U.; Erban, A.; Mauleon, R.; Heuer, S.; Kopka, J.; Hincha, D. K. et al.; Jagadish, K. S. V.: Sugar Starvation of Rice Anthers is a Factor in Reproductive Failure under Heat and Drought Stress, as shown by Metabolite and Transcript Profiling. In: Agriculture and Climate Change - Adapting Crops to Increased Uncertainty (Agri 2015), pp. 70 - 71. 4th International Conference on Agriculture and Horticulture (AGRI), Beijing, PEOPLES R CHINA, July 13, 2015 - July 15, 2015. (2015)
Conference Paper
Fuehrs, H.; Kopka, J.; Braun, H. P.; Horst, W. J.: Metabolomic and Proteomic Analysis of Manganese Sensitivity and Tolerance in the Tropical Legume Cowpea (Vigna unguiculata L.). In: XVI. International Plant Nutrition Colloquium (Ed. Luoma, S. N.). XVI. International Plant Nutrition Colloquium, Sacramento, CA, USA. (2009)
Conference Paper
Kaplan, F.; Sung, D. Y.; Haskell, D.; Riad, G. S.; Popp, M.; Amaya, M.; LaBoon, A.; Kawamura, Y.; Tominaga, Y.; Kopka, J. et al.; Uemura, M.; Lee, K. -.; Brecht, J. K.; Guy, C. L.: Could Ethanolic Fermentation During Cold Shock Be a Novel Plant Cold Stress Coping Strategy? In: PLANT COLD HARDINESS: FROM THE LABORATORY TO THE FIELD, pp. 80 - 90. 8th International Plant Cold Hardiness Seminar (8IPCHS), Saskatchewan, CANADA, August 03, 2007 - August 09, 2007. CABI PUBLISHING-C A B INT., Ocon, England (2009)
Conference Paper
Birkemeye, C.; Kopka, J.: Design of metabolite recovery by variations of the metabolite profiling protocol. In: Concepts in Plant Metabolomics, pp. 45 - 69. 3rd International Congress on Plant Metabolomics, Ames, IA. (2007)

Meeting Abstract (3)

Meeting Abstract
Treves, H.; Siemiatkowska , B.; Luzarowska, U.; Murik, O.; Erban, A.; Armbruster, U.; Brotman, Y.; Kopka, J.; Rensing, S.; Szymanski, J. et al.; Stitt, M.: Multi-omics reveals mechanisms of total resistance to extreme illumination of a desert alga. In Phycologia, 60 (1-SI), p. 113 - 113. International Phycological Society, Odense (2021)
Meeting Abstract
Jaworski, J. G.; Ohlrogge, J. B.; Tai, H. Y.; Kopka, J.; Post-Beittenmiller, D.: Analysis of Fatty-Acid Biosynthesis in Transgenic Plants with Modified Oil Composition. In Journal of Cellular Biochemistry, 56 (Suppl. 18A), p. 82 - 82. (1994)
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