Publications of Z. Nikoloski

Book Chapter (6)

201.
Book Chapter
Redestig, H.; Szymanski, J.; Hirai, M. Y.; Selbig, J.; Willmitzer, L.; Saito, K.; Nikoloski, Z.: Data integration, Metabolic Networks and Systems Biology. In: Biology of Plant Metabolomics, 9 (Ed. Hall, R. D.). Wiley-Blackwell, Oxford, UK (2011)

Proceedings (1)

202.
Proceedings
CUBCO: Prediction of Protein Complexes Based on Min-cut Network Partitioning into Biclique Spanned Subgraphs. Springer International Publishing, Cham (2022)

Conference Paper (3)

203.
Conference Paper
Sajitz-Hermstein, M.; Nikoloski, Z.: Sensitivity of Contending Cellular Objectives in the Central Carbon Metabolism of Escherichia Coli. In: Information Processing in Cells and Tissues, pp. 169 - 172. 10th International Conference on Information Processing in Cells and Tissues (IPCAT), San Diego, CA, September 14, 2015 - September 16, 2015. (2015)
204.
Conference Paper
Larhlimi, A.; Basler, G.; Grimbs, S.; Selbig, J.; Nikoloski, Z.: Stoichiometric capacitance reveals the theoretical capabilities of metabolic networks. In: 11th European Conference on Computational Biology (ECCB) / Conference of the Intelligent Systems in Molecular Biology (ISMB), pp. I502 - I508. 11th European Conference on Computational Biology (ECCB) / Conference of the Intelligent Systems in Molecular Biology (ISMB) , Basel, SWITZERLAND. (2012)
205.
Conference Paper
Basler, G.; Grimbs, S.; Selbig, J.; Nikoloski, Z.: Thermodynamic landscapes of randomized large-scale metabolic networks. In: 7th International Workshop on Computational Systems Biology, WCSB 2010, pp. 23 - 26 (Eds. Nykter, M.; Ruusuvuori, P.; Carlberg, C.; Yli-Harja, O.). 7th International Workshop on Computational Systems Biology, WCSB 2010, Luxembourg, LUX. Tampere International Center for Signal Processing (2010)

Meeting Abstract (1)

206.
Meeting Abstract
Arnold, A.; Nikoloski, Z.: Design and analysis of a reference model of sugar phosphate metabolism. In . First International Workshop on Differential and Integral Equations with Applications in Biology and Medicine 2010, Karlovassi, Samos, Greece, 2010. (2010)

Other (1)

207.
Other
van Dongen, J. T.; Nikoloski, Z.: Modeling alternatives for interpreting the change in oxygen-consumption rates during hypoxic conditions, New Phytologist 190, pp. 273 - 276 (2011)

Editorial (2)

208.
Editorial
Dellero, Y.; Nikoloski, Z.: Editorial: Isotopic Labeling Approaches for Exploring Plant Metabolism Dynamics. Frontiers in Plant Science 14, 1356153 (2023)
209.
Editorial
Hanson, A.D.; Millar, A.H.; Nikoloski, Z.; Way, D.A.: Focus on respiration. Plant Physiology 191 (4), pp. 2067 - 2069 (2023)

Review Article (15)

210.
Review Article
Ferreira, M.A.D.M.; Silveira, W.B.D.; Nikoloski, Z.: Protein constraints in genome-scale metabolic models: Data integration, parameter estimation, and prediction of metabolic phenotypes. (2024)
211.
Review Article
Wendering, P.; Nikoloski, Z.: Model-driven insights into the effects of temperature on metabolism. (2023)
212.
Review Article
Huß, S.; Nikoloski, Z.: Systematic comparison of local approaches for isotopically nonstationary metabolic flux analysis. (2023)
213.
Review Article
Østerlund, I.; Persson, S.; Nikoloski, Z.: Tracing and tracking filamentous structures across scales: A systematic review. (2023)
214.
Review Article
Omranian, S.; Nikoloski, Z.; Grimm, D.: Computational identification of protein complexes from network interactions: Present state, challenges, and the way forward. (2022)
215.
Review Article
Tong, H.; Küken, A.; Razaghi-Moghadam, Z.; Nikoloski, Z.: Characterization of effects of genetic variants via genome-scale metabolic modelling. (2021)
216.
Review Article
Medeiros, D. B.; Daloso, D. M.; Fernie, A. R.; Nikoloski, Z.; Araujo, W. L.: Utilizing systems biology to unravel stomatal function and the hierarchies underpinning its control. (2015)
217.
Review Article
Toepfer, N.; Kleessen, S.; Nikoloski, Z.: Integration of metabolomics data into metabolic networks. (2015)
218.
Review Article
Estevez, S.; Nikoloski, Z.: Generalized framework for context-specific metabolic model extraction methods. (2014)
219.
Review Article
Arnold, A.; Nikoloski, Z.: Comprehensive classification and perspective for modelling photorespiratory metabolism. (2013)
220.
Review Article
Fernie, A. R.; Bauwe, H.; Eisenhut, M.; Florian, A.; Hanson, D. T.; Hagemann, M.; Keech, O.; Mielewczik, M.; Nikoloski, Z.; Peterhansel, C. et al.; Roje, S.; Sage, R.; Timm, S.; von Cammerer, S.; Weber, A. P.; Westhoff, P.: Perspectives on plant photorespiratory metabolism. (2013)
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