Publikationen von Z. Nikoloski

Correa, S. M., Fernie, A. R., Nikoloski, Z. & Brotman, Y. Towards model-driven characterization and manipulation of plant lipid metabolism. Progress in Lipid Research 80, (2020).

Küken, A., Gennermann, K. & Nikoloski, Z. Characterization of maximal enzyme catalytic rates in central metabolism of Arabidopsis thaliana. The Plant Journal 103, 2168–2177 (2020).

Lyall, R., Nikoloski, Z. & Gechev, T. Comparative analysis of ros network genes in extremophile eukaryotes. International Journal of Molecular Sciences 21, 1–27 (2020).

Razaghi-Moghadam, Z. & Nikoloski, Z. Supervised Learning of Gene Regulatory Networks. Current Protocols in Plant Biology 5, (2020).

Robaina-Estévez, S. R. & Nikoloski, Z. Flux-based hierarchical organization of Escherichia coli’s metabolic network. PLoS Computational Biology 16, (2020).

Tong, H., Küken, A. & Nikoloski, Z. Integrating molecular markers into metabolic models improves genomic selection for Arabidopsis growth. Nature Communications 11, (2020).

Angeleska, A. & Nikoloski, Z. Coherent network partitions. Discrete applied mathematics 266, 283–290 (2019).

Clemente-Moreno, J. M., Omranian, N., Sáez, P., Figueroa, C. M., Del-Saz, N., Elso, M., Poblete, L., Orf, I., Cuadros-Inostroza, A., Cavieres, L., Bravo, L., Fernie, A. R., Ribas-Carbó, M., Flexas, J., Nikoloski, Z., Brotman, Y. & Gago, J. Cytochrome respiration pathway and sulphur metabolism sustain stress tolerance to low temperature in the Antarctic species Colobanthus quitensis. New Phytologist 225, 754–768 (2019).

Ferrari, C., Proost, S., Janowski, M., Becker, J., Nikoloski, Z., Bhattacharya, D., Price, D., Tohge, T., Bar-Even, A., Fernie, A. R., Stitt, M. & Mutwil, M. Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida. Nature Communications 10, (2019).

Küken, A., Eloundou-Mbebi, J. M. O., Basler, G. & Nikoloski, Z. Cellular determinants of metabolite concentration ranges. PLoS Computational Biology 15, (2019).

Küken, A. & Nikoloski, Z. Computational Approaches to Design and Test Plant Synthetic Metabolic Pathways. Plant Physiology 179, 894–906 (2019).

Laitinen, R. & Nikoloski, Z. Genetic basis of plasticity in plants. Journal of Experimental Botany 70, 739–745 (2019).

Langary, D. & Nikoloski, Z. Inference of chemical reaction networks based on concentration profiles using an optimization framework. Chaos: An Interdisciplinary Journal of Nonlinear Science 29, 113121 (2019).

Nunes-Nesi, A., Alseekh, S., de Silva, O., Magnum, F., Omranian, N., Lichtenstein, G., Mirnezhad, M., González, R. R. R., Garcia, J. S. y., Conte, M., Leiss, K. A., Klinkhamer, P. G. L., Nikoloski, Z., Carrari, F. & Fernie, A. R. Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds. Metabolomics 15, (2019).

Pandey, P. K., Yu, J., Omranian, N., Alseekh, S., Vaid, N., Fernie, A. R., Nikoloski, Z. & Laitinen, R. Plasticity in metabolism underpins local responses to nitrogen in Arabidopsis thaliana populations. Plant Direct 3, (2019).

Song, Y., Li, G., Nowak, J., Zhang, X., Xu, D., Yang, X., Huang, G., Liang, W., Yang, L., Wang, C., Bulone, V., Nikoloski, Z., Hu, J., Persson, S. & Zhang, D. The Rice Actin-Binding Protein RMD Regulates Light-Dependent Shoot Gravitropism. Plant Physiology 181, 630–644 (2019).

Yu, Y., Wu, S., Nowak, J., Wang, G., Han, L., Feng, Z., Mendrinna, A., Ma, Y., Wang, H., Zhang, X., Tian, J., Dong, L., Nikoloski, Z., Persson, S. & Kong, Z. Live-cell imaging of the cytoskeleton in elongating cotton fibres. Nature Plants 5, 498–504 (2019).

Janowski, M., Zoschke, R., Scharff, L. B., Martinez-Jaime, S., Ferrari, C., Proost, S., Ng Wei Xiong, J., Omranian, N., Musialak-Lange, M., Nikoloski, Z., Graf, A., Schöttler, M. A., Sampathkumar, A., Vaid, N. & Mutwil, M. AtRsgA from Arabidopsis thaliana is important for maturation of the small subunit of the chloroplast ribosome. The Plant Journal 96, 404–420 (2018).

Basler, G., Fernie, A. R. & Nikoloski, Z. Advances in metabolic flux analysis toward genome-scale profiling of higher organisms. Bioscience Reports 38, (2018).

Cubillos, A., Tong, H., Alseekh, S., de Abreu e Lima, F., Yu, J., Fernie, A. R., Nikoloski, Z. & Laitinen, R. Inheritance patterns in metabolism and growth in diallel crosses of Arabidopsis thaliana from a single growth habitat. Heredity 120, 463–473 (2018).