Publikationen von E. Sokolowska

Zeitschriftenartikel (16)

Palos, K., Dittrich, A. C. N., Yu, L. A., Brock, J. R., Railey, C. E., Wu, H. Y. L., Sokolowska, E., Skirycz, A., Hsu, P. Y., Gregory, B. D., Lyons, E., Beilstein, M. A. & Nelson, A. D. L. Identification and functional annotation of long intergenic non-coding RNAs in Brassicaceae. The Plant Cell 34, 3233–3260 (2022).
Alseekh, S., Zhu, F., Vallarino, J. G., Sokolowska, E., Yoshida, T., Bergmann, S., Wendenburg, R., Bolze, A., Skirycz, A., Avin-Wittenberg, T. & Fernie, A. R. Autophagy modulates the metabolism and growth of tomato fruit during development. Horticulture Research 9, (2022).
Schlossarek, D., Luzarowski, M., Sokolowska, E., Thirumalaikumar, V. P., Dengler, L., Willmitzer, L., Ewald, J. C. & Skirycz, A. Rewiring of the protein–protein–metabolite interactome during the diauxic shift in yeast. Cellular and Molecular Life Sciences 79, (2022).
Schlossarek, D., Luzarowski, M., Sokolowska, E., Gorka, M., Willmitzer, L. & Skirycz, A. PROMISed: A novel web-based tool to facilitate analysis and visualization of the molecular interaction networks from co-fractionation mass spectrometry (CF-MS) experiments. Computational and Structural Biotechnology Journal 19, 5117–5125 (2021).
Luzarowski, M., Vicente, R., Kiselev, A., Wagner, M., Schlossarek, D., Erban, A., de Souza, L. P., Childs, D., Wojciechowska, I., Luzarowska, U., Gorka, M., Sokolowska, E., Kosmacz, M., Moreno, J. C., Brzezinska, A., Vegesna, B., Kopka, J., Fernie, A. R., Willmitzer, L., Ewald, J. C. & Skirycz, A. Global mapping of protein–metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity. Communications Biology 4, (2021).
Omidbakhshfard, M. A., Sokolowska, E., Di Vittori, V., de Souza, L. P., Kuhalskaya, A., Brotman, Y., Alseekh, S., Fernie, A. R. & Skirycz, A. Multi-omics analysis of early leaf development in Arabidopsis thaliana. Patterns 2, (2021).
Razaghi-Moghadam, Z., Sokolowska, E., Sowa, M. A., Skirycz, A. & Nikoloski, Z. Combination of network and molecule structure accurately predicts competitive inhibitory interactions. Computational and Structural Biotechnology Journal 19, 2170–2178 (2021).
Uflewski, M., Mielke, S., Correa Galvis, V., von Bismarck, T., Chen, X., Tietz, E., Ruß, J., Luzarowski, M., Sokolowska, E., Skirycz, A., Eirich, J., Finkemeier, I., Schöttler, M. A. & Armbruster, U. Functional characterization of proton antiport regulation in the thylakoid membrane. Plant Physiology 187, 2209–2229 (2021).
Chodasiewicz, M., Sokolowska, E., Nelson-Dittrich, A. C., Masiuk, A., Moreno, J. C., Nelson, A. D. L. & Skirycz, A. Identification and Characterization of the Heat-Induced Plastidial Stress Granules Reveal New Insight Into Arabidopsis Stress Response. Frontiers in Plant Science 11, (2020).
Kosmacz, M., Sokolowska, E., Bouzaa, S. & Skirycz, A. Towards a functional understanding of the plant metabolome. Current Opinion in Plant Biology 55, 47–51 (2020).
Kosmacz, M., Gorka, M., Schmidt, S., Luzarowski, M., Moreno, J. C., Szlachetko, J., Leniak, E., Sokolowska, E., Sofroni, K., Schnittger, A. & Skirycz, A. Protein and metabolite composition of Arabidopsis stress granules. New Phytologist 222, 1420–1433 (2019).
Sokolowska, E., Schlossarek, D., Luzarowski, M. & Skirycz, A. PROMIS: Global Analysis of PROtein-Metabolite Interactions. Current protocols in plant biology 4, (2019).
Yang, L., Perrera, V., Saplaoura, E., Apelt, F., Bahin, M., Kramdi, A., Olas, J., Mueller-Roeber, B., Sokolowska, E., Zhang, W., Li, R., Pitzalis, N., Heinlein, M., Zhang, W., Genovesio, A., Colot, V. & Kragler, F. m5C Methylation Guides Systemic Transport of Messenger RNA over Graft Junctions in Plants. Current Biology 29, 2465–2476 (2019).
Veyel, D., Sokolowska, E., Moreno, J. C., Kierszniowska, S., Cichon, J., Wojciechowska, I., Luzarowski, M., Kosmacz, M., Szlachetko, J., Gorka, M., Meret, M., Graf, A., Meyer, E. H., Willmitzer, L. & Skirycz, A. PROMIS, global analysis of PROtein-metabolite interactions using size separation in Arabidopsis thaliana. The Journal of Biological Chemistry 293, 12440–12453 (2018).
Luzarowski, M., Kosmacz, M., Sokolowska, E., Jasinska, W., Willmitzer, L., Veyel, D. & Skirycz, A. Affinity purification with metabolomic and proteomic analysis unravels diverse roles of nucleoside diphosphate kinases. Journal of Experimental Botany 68, 3487–3499 (2017).
Veyel, D., Kierszniowska, S., Kosmacz, M., Sokolowska, E., Michaelis, A., Luzarowski, M., Szlachetko, J., Willmitzer, L. & Skirycz, A. System-wide detection of protein-small molecule complexes suggests extensive metabolite regulation in plants. Scientific Reports 7, (2017).

Buchkapitel (1)

Luzarowski, M., Sokolowska, E., Schlossarek, D. & Skirycz, A. in Cell-Wide Identification of Metabolite-Protein Interactions (Hrsg. Walker, J. M.) (Springer, 2023). doi:10.1007/978-1-0716-2624-5_10
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