Publications of S. Alseekh

Alseekh, S.; Kostova, D.; Bulut, M.; Fernie, A. R.: Genome-wide association studies: assessing trait characteristics in model and crop plants. Cellular and Molecular Life Sciences 78 (15), pp. 5743 - 5754 (2021)

Breitel, D.; Brett, P.; Alseekh, S.; Fernie, A. R.; Butelli, E.; Martin, C.: Diverting tyrosine: Data from untargeted metabolic analysis of tomato fruit accumulating L-DOPA. Data in Brief 34, 106678 (2021)

Brotman, Y.; Llorente-Wiegand, C.; Oyong, G.; Badoni, S.; Misra, G.; Anacleto, R.; Parween, S.; Pasion, E.; Tiozon Jr., R. N.; Anonuevo, J. J. et al.; Krishna deGuzman, M.; Alseekh, S.; Mbanjo, E. G.N.; Boyd, L. A.; Fernie, A. R.; Sreenivasulu, N.: The genetics underlying metabolic signatures in a brown rice diversity panel and their vital role in human nutrition. The Plant Journal 106 (2), pp. 507 - 527 (2021)

Bulut, M.; Fernie, A. R.; Alseekh, S.: Large-scale Multi-omics Genome-wide Association Studies (Mo-GWAS): Guidelines for Sample Preparation and Normalization. Journal of Visualized Experiments 173, e62732 (2021)

Fernie, A. R.; Alseekh, S.; Liu, J.; Yan, J.: Using Precision Phenotyping to Inform de novo Domestication. Plant Physiology 186 (3), pp. 1397 - 1411 (2021)

Jiang, L.; Yoshida, T.; Stiegert, S.; Yu, J.; Alseekh, S.; Lenhard, M.; Pérez-Alfocea, F.; Fernie, A. R.: Multi-omics approach reveals the contribution of KLU to leaf longevity and drought tolerance. Plant Physiology 185 (2), pp. 352 - 368 (2021)

Jorge, T. F.; Ramalho, J. C.; Alseekh, S.; Pais, I. P.; Leitão, A. E.; Rodrigues, A. P.; Scotti-Campos, P.; Ribeiro-Barros, A. I.; Fernie, A. R.; António, C.: Will Casuarina glauca Stress Resilience Be Maintained in the Face of Climate Change? Metabolites 11 (9), 593 (2021)

Krahmer, J.; Abbas, A.; Mengin, V.; Ishihara, H.; Romanowski, A.; Furniss, J. J.; Moraes, T. A.; Krohn, N.; Annunziata, M. G.; Feil, R. et al.; Alseekh, S.; Obata, T.; Fernie, A. R.; Stitt, M.; Halliday, K. J.: Phytochromes control metabolic flux, and their action at the seedling stage determines adult plant biomass. Journal of Experimental Botany 72 (8), pp. 3263 - 3278 (2021)

Omidbakhshfard, M. A.; Sokolowska, E.; Di Vittori, V.; de Souza, L. P.; Kuhalskaya, A.; Brotman, Y.; Alseekh, S.; Fernie, A. R.; Skirycz, A.: Multi-omics analysis of early leaf development in Arabidopsis thaliana. Patterns 2 (4), 100235 (2021)

Ren, Y.; Li, M.; Guo, S.; Sun, H.; Zhao, J.; Zhang, J.; Liu, G.; He, H.; Tian, S.; Yu, Y. et al.; Gong, G.; Zhang, H.; Zhang, X.; Alseekh, S.; Fernie, A. R.; Scheller, H. V.; Xu, Y.: Evolutionary Gain of Oligosaccharide Hydrolysis and Sugar Transport Enhanced Carbohydrate Partitioning in Sweet Watermelon Fruits. The Plant Cell 33 (5), pp. 1554 - 1573 (2021)

Salem, M. A.; Zayed, A.; Alseekh, S.; Fernie, A. R.; Giavalisco, P.: The integration of MS-based metabolomics and multivariate data analysis allows for improved quality assessment of Zingiber officinale Roscoe. Phytochemistry 190, 112843 (2021)

Scossa, F.; Alseekh, S.; Fernie, A. R.: Integrating multi-omics data for crop improvement. Journal of Plant Physiology 257, 153352 (2021)

Staykov, N. S.; Angelov, M.; Petrov, V.; Minkov, P.; Kanojia, A.; Guinan, K. J.; Alseekh, S.; Fernie, A. R.; Sujeeth, N.; Gechev, T. S.: An Ascophyllum nodosum-Derived Biostimulant Protects Model and Crop Plants from Oxidative Stress. Metabolites 11 (1), 24 (2021)

Di Vittori, V.; Bitocchi, E.; Rodriguez, M.; Alseekh, S.; Bellucci, E.; Nanni, L.; Gioia, T.; Marzario, S.; Logozzo, G.; Rossato, M. et al.; De Quattro, C.; Murgia, M. L.; Ferreira, J. J.; Campa, A.; Xu, C.; Fiorani, F.; Sampathkumar, A.; Fröhlich, A.; Attene, G.; Delledonne, M.; Usadel, B.; Fernie, A. R.; Rau, D.; Papa, R.: Pod indehiscence in common bean is associated to the fine regulation of PvMYB26. Journal of Experimental Botany 72 (5), pp. 1617 - 1633 (2020)

Sewelam, N.; Brilhaus, D.; Bräutigam, A.; Alseekh, S.; Fernie, A. R.; Maurino, V. G.: Molecular plant responses to combined abiotic stresses put a spotlight on unknown and abundant genes. Journal of Experimental Botany 71 (16), pp. 5098 - 5112 (2020)

Aksenov, A.A.; Laponogov, I.; Zhang, Z.; Doran, S.L.F.; Belluomo, I.; Veselkov, D.; Bittremieux, W.; Nothias, L.F.; Nothias-Esposito, M.; Maloney, K.N. et al.; Misra, B.B.; Melnik, A.V.; Smirnov, A.; Du, X.; Jones, K.L.; Dorrestein, K.; Panitchpakdi, M.; Ernst, M.; van der Hooft, J.J.J.; Gonzalez, M.; Carazzone, C.; Amézquita, A.; Callewaert, C.; Morton, J.T.; Quinn, R.A.; Bouslimani, A.; Orio, A.A.; Petras, D.; Smania, A.M.; Couvillion, S.P.; Burnet, M.C.; Nicora, C.D.; Zink, E.; Metz, T.O.; Artaev, V.; Humston-Fulmer, E.; Gregor, R.; Meijler, M.M.; Mizrahi, I.; Eyal, S.; Anderson, B.; Dutton, R.; Lugan, R.; Boulch, P.L.; Guitton, Y.; Prevost, S.; Poirier, A.; Dervilly, G.; Le Bizec, B.; Fait, A.; Persi, N.S.; Song, C.; Gashu, K.; Coras, R.; Guma, M.; Manasson, J.; Scher, J.U.; Barupal, D.K.; Alseekh, S.; Fernie, A. R.; Mirnezami, R.; Vasiliou, V.; Schmid, R.; Borisov, R.S.; Kulikova, L.N.; Knight, R.; Wang, M.; Hanna, G.B.; Dorrestein, P.C.; Veselkov, K.: Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data. Nature Biotechnology 39, pp. 169 - 173 (2020)

Alseekh, S.; de Souza, L. P.; Benina, M.; Fernie, A. R.: The Style and Substance of Plant Flavonoid decoration; Towards Defining both Structure and Function. Phytochemistry 174, 112347 (2020)

Alseekh, S.; Ofner, I.; Liu, Z.; Osorio, S.; Vallarino, J. G.; Last, R. L.; Zamir, D.; Tohge, T.; Fernie, A. R.: Quantitative trait loci analysis (QTL) of seed specialized metabolites reveals seed-specific flavonols and differential regulation of glycoalkaloid content in tomato. The Plant Journal 103 (6), pp. 2007 - 2024 (2020)

Alseekh, S.; Scossa, F.; Fernie, A. R.: Mobile Transposable Elements Shape Plant Genome Diversity. Trends in Plant Science 25 (11), pp. 1062 - 1064 (2020)

Breitel, D.; Brett, P.; Alseekh, S.; Fernie, A. R.; Butelli, E.; Martin, C.: Metabolic engineering of tomato fruit enriched in L-DOPA. Metabolic Engineering 65, pp. 185 - 196 (2020)