Publications of D. Walther

Journal Article (89)

1.
Journal Article
Murik, O.; Geffen, O.; Shotland, Y.; Fernandez-Pozo, N.; Ullrich, K. K.; Walther, D.; Rensing, S. A.; Treves, H.: Genomic imprints of unparalleled growth. New Phytologist 241 (3), pp. 1144 - 1160 (2023)
2.
Journal Article
Back, G.; Walther, D.: Predictions of DNA mechanical properties at a genomic scale reveal potentially new functional roles of DNA flexibility. NAR: genomics and bioinformatics 5 (4), lqad097 (2023)
3.
Journal Article
Giese, J.; Eirich, J.; Walther, D.; Zhang, Y.; Lassowskat, I.; Fernie, A. R.; Elsässer, M.; Maurino, V. G.; Schwarzländer, M.; Finkemeier, I.: The interplay of post-translational protein modifications in Arabidopsis leaves during photosynthesis induction. The Plant Journal 116 (4), pp. 1172 - 1193 (2023)
4.
Journal Article
Weiszmann, J.; Walther, D.; Clauw, P.; Back, G.; Gunis, J.; Reichardt, I.; Koemeda, S.; Jez, J.; Nordborg, M.; Schwarzerova, J. et al.; Pierides, I.; Nägele, T.; Weckwerth, W.: Metabolome plasticity in 241 Arabidopsis thaliana accessions reveals evolutionary cold adaptation processes. Plant Physiology 193 (2), pp. 980 - 1000 (2023)
5.
Journal Article
Qiu, Y.; Li, Z.; Walther, D.; Köhler, C.: Updated phylogeny and protein structure predictions revise the hypothesis on the origin of MADS-box transcription factors in land plants. Molecular Biology and Evolution 40 (9), msad194 (2023)
6.
Journal Article
Loiacono, F.V.; Walther, D.; Seeger, S.; Thiele, W.; Gerlach, I.; Karcher, D.; Schöttler, M. A.; Zoschke, R.; Bock, R.: Emergence of novel RNA editing sites by changes in the binding affinity of a conserved PPR protein. Molecular Biology and Evolution 39 (12), msac222 (2022)
7.
Journal Article
Chen, L.; Zhao, H.; Chen, Y.; Jiang, F.; Zhou, F.; Liu, Q.; Fan, Y.; Liu, T.; Tu, W.; Walther, D. et al.; Song, B.: Comparative transcriptomics analysis reveals a calcineurin B-like gene to positively regulate constitutive and acclimated freezing tolerance in potato. Plant, Cell and Environment 45 (11), pp. 3305 - 3321 (2022)
8.
Journal Article
Fischer, A.; Dotzek, J.; Walther, D.; Greiner, S.: Graph-based models of the Oenothera mitochondrial genome capture the enormous complexity of higher plant mitochondrial DNA organization. NAR: genomics and bioinformatics 4 (2), lqac027 (2022)
9.
Journal Article
Hoang, Y.; Gryzik, S.; Hoppe, I.; Rybak, A.; Schädlich, M.; Kadner, I.; Walther, D.; Vera, J.; Radbruch, A.; Groth, D. et al.; Baumgart, S.; Baumgrass, R.: PRI: Re-analysis of a public mass cytometry dataset reveals patterns of effective tumor treatments. Frontiers in immunology 13, 849329 (2022)
10.
Journal Article
Thieme, S.; Walther, D.: Biclique extension as an effective approach to identify missing links in metabolic compound-protein interaction networks. Bioinformatics advances 2 (1), vbac001 (2022)
11.
Journal Article
Martinez-Seidel, F.; Hsieh, Y.-C.; Walther, D.; Kopka, J.; Firmino, A.: COSNet(i): ComplexOme-Structural Network Interpreter used to study spatial enrichment in metazoan ribosomes. BMC Bioinformatics 22, 605 (2021)
12.
Journal Article
Moreno, J.C.; Rojas, B.E.; Vicente, R.; Gorka, M.; Matz, T.; Kosmacz, M.; Peralta-Ariza, J.S.; Zhang, Y.; Alseekh, S.; Childs, D. et al.; Luzarowski, M.; Nikoloski, Z.; Zarivach, R.; Walther, D.; Hartman, M.D.; Figueroa, C.M.; Iglesias, A.A.; Fernie, A. R.; Skirycz, A.: Tyr-Asp inhibition of glyceraldehyde 3-phosphate dehydrogenase affects plant redox metabolism. EMBO Journal 40 (15), e106800 (2021)
13.
Journal Article
Back, G.; Walther, D.: Identification of cis-regulatory motifs in first introns and the prediction of intron-mediated enhancement of gene expression in Arabidopsis thaliana. BMC Genomics 22 (1), 390 (2021)
14.
Journal Article
Kuang, J.-F.; Wu, C.-J.; Guo, Y.-F.; Walther, D.; Shan, W.; Chen, J.-Y.; Chen, L.; Lu, W.-J.: Deciphering Transcriptional Regulators of Banana Fruit Ripening by Regulatory Network Analysis. Plant Biotechnology Journal 19 (3), pp. 477 - 489 (2021)
15.
Journal Article
Martinez-Seidel, F.; Beine-Golovchuk, O.; Hsieh, Y.-C.; El Eshraky, K.; Gorka, M.; Cheong, B.-E.; Jimenez‐posada, E.V.; Walther, D.; Skirycz, A.; Roessner, U. et al.; Kopka, J.; Firmino, A.: Spatially enriched paralog rearrangements argue functionally diverse ribosomes arise during cold acclimation in arabidopsis. International Journal of Molecular Sciences 22 (11), 6160 (2021)
16.
Journal Article
Schumacher, C.; Thümecke, S.; Schilling, F.; Koehl, K. I.; Kopka, J.; Sprenger, H.; Hincha, D. K.; Walther, D.; Seddig, S.; Peters, R. et al.; Zuther, E.; Haas, M.; Horn, R.: Genome-wide approach to identify quantitative trait loci for drought tolerance in tetraploid potato (Solanum tuberosum L.). International Journal of Molecular Sciences 22 (11), 6123 (2021)
17.
Journal Article
Zaborowski, A. B.; Walther, D.: Determinants of correlated expression of transcription factors and their target genes. Nucleic Acids Research 48 (20), pp. 11347 - 11369 (2020)
18.
Journal Article
Gottmann, P.; Ouni, M.; Zellner, L.; Jähnert, M.; Rittig, K.; Walther, D.; Schürmann, A.: Polymorphisms in miRNA binding sites involved in metabolic diseases in mice and humans. Scientific Reports 10 (1), 7202 (2020)
19.
Journal Article
Haas, M.; Sprenger, H.; Zuther, E.; Peters, R.; Seddig, S.; Walther, D.; Kopka, J.; Hincha, D. K.; Koehl, K. I.: Can Metabolite- and Transcript-Based Selection for Drought Tolerance in Solanum tuberosum Replace Selection on Yield in Arid Environments? Frontiers in Plant Science 11, 1071 (2020)
20.
Journal Article
Kaiser, E.; Walther, D.; Armbruster, U.: Growth under fluctuating light reveals large trait variation in a panel of arabidopsis accessions. Plants 9 (3), 319 (2020)
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