Publications of A. Fischer

Ting, M. K. Y.; Gao, Y.; Barahimipour, R.; Ghandour, R.; Liu, J.; Martinez-Seidel, F.; Smirnova, J.; Gotsmann, V. L.; Fischer, A.; Haydon, M. J. et al.; Willmund, F.; Zoschke, R.: Optimization of ribosome profiling in plants including structural analysis of rRNA fragments. Plant Methods 20 (1), 143 (2024)

Skeffington, A. W.; Fischer, A.; Sviben, S.; Brzezinka , M.; Gorka, M.; Bertinetti, L.; Woehle, C.; Huettel, B.; Graf, A.; Scheffel, A.: A joint proteomic and genomic investigation provides insights into the mechanism of calcification in coccolithophores. Nature Communications 14, 3749 (2023)

Vyse, K.; Fischer, A.; Zajancauskaite, G.; Erban, A.; Kopka, J.; Balazadeh, S.; Zuther, E.: Co-expression networks of deacclimation-impaired transcription factor mutants identified complex regulation of the cold stress release response. Physiologia Plantarum 174 (4), e13746 (2022)

Kariñho-Betancourt, E.; Carlson, D.; Hollister, J.; Fischer, A.; Greiner, S.; Johnson, M. T. J.: The evolution of multi-gene families and metabolic pathways in the evening primroses (Oenothera: Onagraceae): A comparative transcriptomics approach. PLoS One 17 (6), e0269307 (2022)

Fischer, A.; Dotzek, J.; Walther, D.; Greiner, S.: Graph-based models of the Oenothera mitochondrial genome capture the enormous complexity of higher plant mitochondrial DNA organization. NAR: genomics and bioinformatics 4 (2), lqac027 (2022)

Forner, J.; Kleinschmidt, D.; Meyer, E. H.; Fischer, A.; Morbitzer, R.; Lahaye, T.; Schöttler, M. A.; Bock, R.: Targeted introduction of heritable point mutations into the plant mitochondrial genome. Nature Plants 8, pp. 245 - 256 (2022)

Zupok, A.; Kozul, D.; Schöttler, M. A.; Niehörster, J.; Garbsch, F.; Liere, K.; Fischer, A.; Zoschke, R.; Malinova, I.; Bock, R. et al.; Greiner, S.: A photosynthesis operon in the chloroplast genome drives speciation in evening primroses. The Plant Cell 33 (8), pp. 2583 - 2601 (2021)

Moreno, J.C.; Martinez-Jaime, S.; Kosmacz, M.; Sokolowska, E.; Schulz, P.; Fischer, A.; Luzarowska, U.; Havaux, M.; Skirycz, A.: A Multi-OMICs Approach Sheds Light on the Higher Yield Phenotype and Enhanced Abiotic Stress Tolerance in Tobacco Lines Expressing the Carrot lycopene β-cyclase1 Gene. Frontiers in Plant Science 12, 624365 (2021)

Claassens, N. J.; Scarinci, G.; Fischer, A.; Flamholz, A.I.; Newell, W.; Frielingsdorf, S.; Lenz, O.; Bar-Even, A.: Phosphoglycolate salvage in a chemolithoautotroph using the Calvin cycle. Proceedings of the National Academy of Sciences of the United States of America 117 (36), pp. 22452 - 22461 (2020)

Schaarschmidt, S.; Fischer, A.; Lawas, L.M.F.; Alam, R.; Septiningsih, E. M.; Bailey-Serres, J.; Jagadish, S. V. K.; Huettel, B.; Hincha, D. K.; Zuther, E.: Utilizing PacBio Iso-Seq for Novel Transcript and Gene Discovery of Abiotic Stress Responses in Oryza sativa L. International Journal of Molecular Sciences 21 (21), 8148 (2020)

Schaarschmidt, S.; Fischer, A.; Zuther, E.; Hincha, D. K.: Evaluation of seven different rna-seq alignment tools based on experimental data from the model plant arabidopsis thaliana. International Journal of Molecular Sciences 21 (5), 1720 (2020)

Sujeeth, N.; Mehterov, N.; Gupta, S.; Qureshi, M. K.; Fischer, A.; Proost, S.; Omidbakhshfard, M. A.; Obata, T.; Benina, M.; Staykov, N. et al.; Balazadeh, S.; Walther, D.; Fernie, A. R.; Mueller-Roeber, B.; Hille, J.; Gechev, T. S.: A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana. Cellular and Molecular Life Sciences 77, pp. 705 - 718 (2020)

Whitcomb, S. J.; Rakpenthai, A.; Brückner, F.; Fischer, A.; Parmar, S.; Erban, A.; Kopka, J.; Hawkesford, M.J.; Hoefgen, R.: Cysteine and Methionine Biosynthetic Enzymes Have Distinct Effects on Seed Nutritional Quality and on Molecular Phenotypes Associated With Accumulation of a Methionine-Rich Seed Storage Protein in Rice. Frontiers in Plant Science 11, 1118 (2020)

Armarego-Marriott, T.; Kowalewska, L.; Burgos, A.; Fischer, A.; Thiele, W.; Erban, A.; Strand, D.; Kahlau, S.; Hertle, A. P.; Kopka, J. et al.; Walther, D.; Reich, Z.; Schöttler, M. A.; Bock, R.: Highly Resolved Systems Biology to Dissect the Etioplast-to-Chloroplast Transition in Tobacco Leaves. Plant Physiology 180 (1), pp. 654 - 681 (2019)

Sobanski, J.; Giavalisco, P.; Fischer, A.; Kreiner, J.M.; Walther, D.; Schöttler, M. A.; Pellizzer, T.; Golczyk, H.; Obata, T.; Bock, R. et al.; Sears, B.B.; Greiner, S.: Chloroplast competition is controlled by lipid biosynthesis in evening primroses. Proceedings of the National Academy of Sciences of the United States of America 116 (12), pp. 5665 - 5674 (2019)

Zuther, E.; Schaarschmidt, S.; Fischer, A.; Erban, A.; Pagter, M.; Mubeen, U.; Giavalisco, P.; Kopka, J.; Sprenger, H.; Hincha, D. K.: Molecular signatures associated with increased freezing tolerance due to low temperature memory in Arabidopsis. Plant, Cell and Environment 42 (3- SI), pp. 854 - 873 (2019)

Schwachtje, J.; Fischer, A.; Erban, A.; Kopka, J.: Primed primary metabolism in systemic leaves: a functional systems analysis. Scientific Reports 8, 216 (2018)

Ploetner, B.; Nurmi, M.; Fischer, A.; Watanabe, M.; Schneeberger, K.; Holm, S.; Vaid, N.; Schöttler, M. A.; Walther, D.; Hoefgen, R. et al.; Weigel, D.; Laitinen, R.: Chlorosis caused by two recessively interacting genes reveals a role of RNA helicase in hybrid breakdown in Arabidopsis thaliana. The Plant Journal 91 (2), pp. 251 - 262 (2017)

Swiadek, M.; Proost, S.; Sieh, D.; Yu, J.; Todesco, M.; Jorzig, C.; Cubillos, A.; Plötner, B.; Nikoloski, Z.; Chae, E. et al.; Giavalisco, P.; Fischer, A.; Schröder, F.; Kim, S.-T.; Weigel, D.; Laitinen, R.: Novel allelic variants in ACD6 cause hybrid necrosis in local collection of Arabidopsis thaliana. New Phytologist 213 (2), pp. 900 - 915 (2017)

Tillich, M.; Lehwark, P.; Pellizzer, T.; Ulbricht-Jones, E. S.; Fischer, A.; Bock, R.; Greiner, S.: GeSeq - versatile and accurate annotation of organelle genomes. Nucleic Acids Research 45 (W1), pp. W6 - W11 (2017)