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Feng, X.; Meng, D.; Wang, Y.; Fernie, A. R.; Bai, C.; He, X.; Tao, J.; Zhou, X.; Ren, Y.; Zuo, J. et al.; Zheng, Y.: Chlorine dioxide affects metabolism of harvested cauliflower. Postharvest Biology and Technology 230, 113735 (2025)

Fernie, A. R.: Spotlight on “Proximity proteomics reveals a mechanism of fatty acid transfer at lipid droplet-mitochondria- endoplasmic reticulum contact sites” by Bezawork-Geleta et al. 2025. Journal of Mitochondria, Plastids and Endosymbiosis 3 (1), 2493930 (2025)

Satanowski, A.; Marchal, D.G.; Perret, A.; Petit, J.-L.; Bouzon, M.; Döring, V.; Dubois, I.; He, H.; Smith, E.N.; Pellouin, V. et al.; Petri, H.M.; Rainaldi, V.; Nattermann, M.; Burgener, S.; Paczia, N.; Zarzycki, J.; Heinemann, M.; Bar-Even, A.; Erb, T.J.: Design and implementation of aerobic and ambient CO2-reduction as an entry-point for enhanced carbon fixation. Nature Communications 16 (1), 3134 (2025)

Sacharowski, S.; Kubala, S.; Cwiek, P.; Steciuk, J.; Gratkowska-Zmuda, D.; Oksinska, P.; Bucior, E.; Rolicka, A.; Ciesla, M.; Nowicka, K. et al.; Alseekh, S.; Tohge, T.; Giavalisco, P.; Zugaj, D.; Stolze, S.; Harzen, A.; Franzen, R.; Huettel, B.; Grzesiuk, E.; Hajirezaei, M.; Nakagami, H.; Koncz, C.; Fernie, A. R.; Sarnowski, T.: BAF60/SWP73 subunits define subclasses of SWI/SNF chromatin remodelling complexes in Arabidopsis. New Phytologist 247 (2), pp. 791 - 812 (2025)

Wendering, P.; Andreou, G.M.; Laitinen, R.A.E.; Nikoloski, Z.: Metabolic modeling identifies determinants of thermal growth responses in Arabidopsis thaliana. New Phytologist 247 (1), pp. 178 - 190 (2025)

Dao, O.; Bertrand, M.; Alseekh, S.; Veillet, F.; Auroy, P.; Nguyen, P.-C.; Légeret, B.; Epting, V.; Morin, A.; Cuiné, S. et al.; Monteil, C. L.; Mackinder, L. C. M.; Burlacot, A.; Krieger-Liszkay, A.; Weber, A. P. M.; Fernie, A. R.; Peltier, G.; Li-Beisson, Y.: The green algae CO2 concentrating mechanism and photorespiration jointly operate during acclimation to low CO2. Nature Communications 16, 5296 (2025)

de Oliveira, P.; de Souza, L. P.; Ferreira, P.; Mauxion, J.; da Silva, L.; Chang, A.; Saleme, M.; Zhu, F.; Garcia, S.; De Beukelaer, H. et al.; Martins, M.; Rosado-Souza, L.; Pino, L.; Bollier, N.; Peres, L.; Vandepoele, K.; Goossens, A.; Gonzalez, N.; Fernie, A. R.; Eloy, N.: Modulating the activity of the APC/C regulator SISAMBA improves the sugar and antioxidant content of tomato fruits. Plant Biotechnology Journal (2025)

Forner, J.: Genome modification in plant mitochondria. Plant Physiology 198 (2), kiaf197 (2025)

Karakas, E.; Bulut, M.; Fernie, A. R.: Metabolome guided treasure hunt - lerning from metabolic diversity. Journal of Plant Physiology 309, 154494 (2025)

Karakas, E.; Bulut, M.; Fernie, A. R.: The use of web resources for metabolomics in horticultural crops. Horticulture Advances 3, 18 (2025)

Liu, H.; El-Azaz, J.; Yobi, A.; Yokoyama, R.; Wu, S.; Chin-Quee, A.; Gorman, Z.; Angelovici, R.; Block, A.; Maeda, H. et al.; McCarty, D.; Suzuki, M.: Maize big embryo 6 reveals roles of plastidial and cytosolic prephenate aminotransferases in seed and plant development. Plant Cell 37 (6), koaf067 (2025)

Qin, K.; Liu, F.; Zhang, C.; Deng, R.; Fernie, A. R.; Zhang, Y.: Systems and synthetic biology for plant natural product pathway elucidation. Cell Reports Methods 44 (6), 115715 (2025)

Swain, J.; Fernie, A. R.; Foyer, C.H.; Gupta, K.J.: The Multifaceted Metabolic Role of Lactate Dehydrogenase in Submergence Tolerance. Plant, Cell and Environment (2025)

Tiozon, R. J. N.; Ong, G.; Sartagoda, K.; Duque, S.; Alseekh, S.; Bonto, A.; Gempesaw, S. J.; Pratap, V.; Reginio, F. J.; Tengco, J. et al.; Seagan, C.; Tolentino, J.; Santiago, D.; Fernie, A. R.; Sreenivasulu, N.: Optimization of phenolic extraction method and in vitro bioaccessibility of microencapsulated pigmented rice bran extracts and their antioxidant and anticancer properties. FOOD HYDROCOLLOIDS FOR HEALTH 7, 100221 (2025)

Wagner, M.; Kang, J.; Mercado, C.; Thirumlaikumar, V. P.; Gorka, M.; Zillmer, H.; Guo, J.; Minen, R. I.; Plecki, C. F.; Dehesh, K. et al.; Schroeder, F. C.; Walther, D.; Skirycz, A.: Mapping protein-metabolite interactions in E. coli by integrating chromatographic techniques and co-fractionation mass spectrometry. iScience 28 (6), 112611 (2025)

Wang, L.; Wang, Y.; Feil, R.; MacNeill, G. J.; Lunn, J. E.; Tetlow, I. J.; Emes, M. J.: Plastidial starch phosphorylase regulates maltodextrin turnover during starch granule initiation in Arabidopsis leaves. Plant Physiology 198 (2), kiaf216 (2025)

Zou, R.; Lu, Z.; Djamei, A.; Kragler, F.; Lam, H.-M.; Zhang, S.: The Roles of Epigenetics in the Interplay Between Beneficial Rhizobacteria and Plants. Modern Agriculture 3 (1), e70017 (2025)

Asao, S.; Way, D. A.; Turnbull, M. H.; Stitt, M.; McDowell, N. G.; Reich, P. B.; Bloomfield, K. J.; Zaragoza-Castells, J.; Creek, D.; O'Sullivan, O. et al.; Crous, K. Y.; Egerton, J. J.G.; Mirotchnick, N.; Weerasinghe, L. K.; Griffin, K. L.; Hurry, V.; Meir, P.; Sitch, S.; Atkin, O. K.: Leaf nonstructural carbohydrate residence time, not concentration, correlates with leaf functional traits following the leaf economic spectrum in woody plants. New Phytologist 246 (4), pp. 1505 - 1519 (2025)

da Luz, L.M.; Valente, L.M.L.; Medeiros, D.B.; Batista-Silva, W.; da Costa, L.C.; Oliveira, F.S.; Martins, S.C.V.; Fernie, A. R.; Nunes-Nesi, A.; Araújo, W.L.: Functional lack of SLAC1 modifies guard cell metabolism without impacting photosynthesis under elevated [CO2] and moderated water restriction. Environmental and Experimental Botany 233, 106142 (2025)

Fernie, A. R.; Bulut, M.: Design of future climate smart crops by engineering heat stress-responsive gene expression. Molecular Plant 18 (5), pp. 738 - 740 (2025)