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Feng, X.; Meng, D.; Wang, Y.; Fernie, A. R.; Bai, C.; He, X.; Tao, J.; Zhou, X.; Ren, Y.; Zuo, J. et al.; Zheng, Y.: Chlorine dioxide affects metabolism of harvested cauliflower. Postharvest Biology and Technology 230, 113735 (2025)

Fernie, A. R.: Spotlight on “Proximity proteomics reveals a mechanism of fatty acid transfer at lipid droplet-mitochondria- endoplasmic reticulum contact sites” by Bezawork-Geleta et al. 2025. Journal of Mitochondria, Plastids and Endosymbiosis 3 (1), 2493930 (2025)

Satanowski, A.; Marchal, D.G.; Perret, A.; Petit, J.-L.; Bouzon, M.; Döring, V.; Dubois, I.; He, H.; Smith, E.N.; Pellouin, V. et al.; Petri, H.M.; Rainaldi, V.; Nattermann, M.; Burgener, S.; Paczia, N.; Zarzycki, J.; Heinemann, M.; Bar-Even, A.; Erb, T.J.: Design and implementation of aerobic and ambient CO2-reduction as an entry-point for enhanced carbon fixation. Nature Communications 16 (1), 3134 (2025)

Lehr, P.P.; Erban, A.; Kopka, J.; Zörb, C.: Sulfate enhances metabolic acclimation under drought stress – a comparative study of grapevine and maize. Plant Stress 17, 100938 (2025)

Török, A.I.; Cadar, O.; Kalapos, B.; Pál, M.; Szalai, G.; Mednyánszky, Z.; Gierczik, K.; Székely, A.; Simon-Sarkadi, L.; Kocsy, G.: Blue and far-red light modify the adaptation of Lemna minor L. to cadmium stress based on glutathione, phytochelatin, chemical element and free amino acid levels. Plant Stress 17, 100937 (2025)

Fernie, A. R.; Timm, S.: Differing metabolic responses of guard cells to blue light. New Phytologist (2025)

Figueiredo, D.D.; Sharma, R. A.: The mysterious dialogue between the embryo, endosperm, and seed coat, and its implications on seed traits. Journal of Experimental Botany, eraf320 (2025)

Gago, J.; Carriquí, M.; Ayuso, M.; Nunes-Nesi, A.; Figueroa, C. M.; Fernie, A. R.; Clemente-Moreno, M. J.; Gulías, J.; Flexas, F. J.; Cavieres, L. A. et al.; Bravo, B. L. A.: A Double Edge-Sword in Antarctica: In Situ Passive Warming Exacerbates Drought and Heat Stress Differentially in the Native Vascular Species. Physiologia Plantarum 177 (4), e70399 (2025)

Jia, X.; Zhang, X.; Chen, X.; Fernie, A. R.; Wen, W.: The horizontally transferred gene, CsMTAN, rewired purine traffic to build caffeine factories in tea leaves. Journal of Integrative Plant Biology (2025)

Rose, L. E.; Zangishei, Z.; Fernie, A. R.; Usadel, B.: Tomato genomics and its relatives are breaking the genomics barriers. Journal of Experimental Botany, eraf298 (2025)

Sacharowski, S.; Kubala, S.; Cwiek, P.; Steciuk, J.; Gratkowska-Zmuda, D.; Oksinska, P.; Bucior, E.; Rolicka, A.; Ciesla, M.; Nowicka, K. et al.; Alseekh, S.; Tohge, T.; Giavalisco, P.; Zugaj, D.; Stolze, S.; Harzen, A.; Franzen, R.; Huettel, B.; Grzesiuk, E.; Hajirezaei, M.; Nakagami, H.; Koncz, C.; Fernie, A. R.; Sarnowski, T.: BAF60/SWP73 subunits define subclasses of SWI/SNF chromatin remodelling complexes in Arabidopsis. New Phytologist 247 (2), pp. 791 - 812 (2025)

Samo, N.; Trejo-Arellano, M.; Gahurová, L.; Erban, A.; Ebert, A.; Rivière, Q.; Kubásek, J.; Aflaki, F.; Mondeková, H.; Schlereth, A. et al.; Dubois, A.; Zhou, M.; Novak, O.; Santrucek, J.; Bouyer, D.; Roudier, F.; Kopka, J.; Mozgová, I.: Polycomb repressive complex 2 facilitates the transition from heterotrophy to photoautotrophy during seedling emergence. Plant Cell 37 (7), koaf148 (2025)

Tao, J.; Wang, Y.; Fernie, A. R.; Ma, L.; Bai, C.; Liu, S.; Zhou, X.; Zuo, J.; Zheng, Y.: Transcriptomic and epigenetic signatures of tomato fruit after postharvest UV-C irradiation are associated with the maintenance of fruit quality. Plant Biotechnology Journal (2025)

Tonetti, T.; Rojas, B. E.; Feil, R.; Seimandi, C.; Lucero, L. E.; Cabello, J. V.; Calace, P.; Saigo, M.; Arrivault, S.; Stitt, M. et al.; Lunn, J. E.; Figueroa, C. M.: Intercellular compartmentation of trehalose 6-phosphate metabolism in Setaria viridis leaves. Journal of Experimental Botany, eraf308 (2025)

Wendering, P.; Andreou, G.M.; Laitinen, R.A.E.; Nikoloski, Z.: Metabolic modeling identifies determinants of thermal growth responses in Arabidopsis thaliana. New Phytologist 247 (1), pp. 178 - 190 (2025)

Zhang, W.; Wang, Y.; Li, W.; Wu, S.; Chen, Y.; Ye, M.; Huang, W.; Fernie, A. R.; Yan, S.: A novel proteomics workflow for simultaneous analysis of protein phosphorylation and S-nitrosylation. aBIOTECH (2025)

Zhao, T.; Vink, S.N.; Jia, X.; Erban, A.; Schaarschmidt, S.; Kopka, J.; Zuther, E.; Treder, K.; Michałowska, D.; Guyoneaud, R. et al.; Elzenga, J.T.M.; Attard, E.; Salles, J.F.: Unveiling Potato Cultivars With Microbiome Interactive Traits for Sustainable Agricultural Production. Plant, Cell and Environment (2025)

Dao, O.; Bertrand, M.; Alseekh, S.; Veillet, F.; Auroy, P.; Nguyen, P.-C.; Légeret, B.; Epting, V.; Morin, A.; Cuiné, S. et al.; Monteil, C. L.; Mackinder, L. C. M.; Burlacot, A.; Krieger-Liszkay, A.; Weber, A. P. M.; Fernie, A. R.; Peltier, G.; Li-Beisson, Y.: The green algae CO2 concentrating mechanism and photorespiration jointly operate during acclimation to low CO2. Nature Communications 16, 5296 (2025)

de Oliveira, P.; de Souza, L. P.; Ferreira, P.; Mauxion, J.; da Silva, L.; Chang, A.; Saleme, M.; Zhu, F.; Garcia, S.; De Beukelaer, H. et al.; Martins, M.; Rosado-Souza, L.; Pino, L.; Bollier, N.; Peres, L.; Vandepoele, K.; Goossens, A.; Gonzalez, N.; Fernie, A. R.; Eloy, N.: Modulating the activity of the APC/C regulator SISAMBA improves the sugar and antioxidant content of tomato fruits. Plant Biotechnology Journal (2025)

Forner, J.: Genome modification in plant mitochondria. Plant Physiology 198 (2), kiaf197 (2025)