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Correa Cordoba, S. M.; Burgos, A.; Cuadros-Inostroza, A. C.; Xu, K.; Brotman, Y.; Nikoloski, Z.: A data-integrative modeling approach accurately characterizes the effects of mutations on Arabidopsis lipid metabolism. Plant Physiology 197 (2), kiae615 (2025)

Das, D.; Varshney, K.; Ogawa, S.; Torabi, S.; Hüttl, R.; Nelson, D. C.; Gutjahr, C.: Ethylene promotes SMAX1 accumulation to inhibit arbuscular mycorrhiza symbiosis. Nature Communications 16 (1), 2025 (2025)

Figueiredo, Y.G.; Gasparini, K.; Bulut, M.; Fernie, A. R.; Zsögön, A.: The genetic basis of prickle loss in the Solanaceae. Trends in Plant Science 30 (2) (2025)

Julian, J.; Gao, P.; Del Chiaro, A.; Carlos De La Concepcion, J.; Armengot, L.; Somssich, M.; Duverge, H.; Clavel, M.; Grujic, N.; Kobylinska, R. et al.; Polivka, I.; Besten, M.; Andersen, T.G.; Dank, C.; Korbei, B.; Bachmair, A.; Coll, N.S.; Minina, E.A.; Sprakel, J.; Dagdas, Y.: ATG8ylation of vacuolar membrane protects plants against cell wall damage. Nature Plants 11, pp. 321 - 339 (2025)

Novello, M.; Bustamante, C.; Svetaz, L.; Goldy, C.; Valentini, G.; Drincovich, M.; Brotman, Y.; Fernie, A. R.; Lara, M.: Integrated Metabolomic, Lipidomic and Proteomic Analysis Define the Metabolic Changes Occurring in Curled Areas in Leaves With Leaf Peach Curl Disease. Plant, Cell and Environment 48 (2), pp. 1179 - 1200 (2025)

Priego-Cubero, S.; Knoch, E.; Wang, Z.; Alseekh, S.; Braun, K.-H.; Chapman, P.; Fernie, A. R.; Liu, C.; Becker, C.: Subfunctionalization and epigenetic regulation of a biosynthetic gene cluster in Solanaceae. Proceedings of the National Academy of Sciences of the United States of America 122 (8), e2420164122 (2025)

Rajarathinam, Y.; Wittemeier, L.; Gutekunst, K.; Hagemann, M.; Kopka, J.: Dynamic photosynthetic labeling and carbon-positional mass spectrometry monitor in vivo Rubisco carbon assimilation rates. Plant Physiology 197 (2), kiaf020 (2025)

Siqueira, J.; Martins, A.; Wakin, T.; Silva, M.; Batista-Silva, W.; Brito, F.; Zsögön, A.; Fernie, A. R.; Nunes-Nesi, A.; Araújo, W.: The Modulation of Growth and Metabolism in Solanum lycopersicum Contrast With the Leaf-Specific Regulation of Wild Tomato Species. Plant, Cell and Environment 48 (2), pp. 1201 - 1214 (2025)

Urrea-Castellanos, R.; Calderan-Rodrigues, M.J.; Artins, A.; Musialak-Lange, M.; Macharanda-Ganesh, A.; Fernie, A. R.; Wahl, V.; Caldana, C.: The Regulatory-associated protein of target of rapamycin 1B (RAPTOR 1B) interconnects with the photoperiod pathway to promote flowering in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America 122 (6), e2405536122 (2025)

Vicente, R.; Fernie, A. R.; Uberegui, E.: High-throughput screening of wheat leaf dark respiration identifies significant genetic control. Journal of Experimental Botany 76 (4), pp. 904 - 908 (2025)

Yin, H.; Liu, W.; Hu, X.; Jia, J.; Liu, M.; Wei, J.; Cheng, Y.; Gong, X.; Li, Q.; Yan, W. et al.; Jia, J.; Gao, L.; Fernie, A. R.; Chen, W.: A wheat phytohormone atlas spanning major tissues across the entire life cycle provides novel insights into cytokinin and jasmonic acid interplay. Molecular Plant 18 (2), pp. 366 - 382 (2025)

Yoshida, T.; Fernie, A. R.: The protein phosphatases of abscisic acid coreceptors mediate carbon metabolism in Arabidopsis. Theoretical and Experimental Plant Physiology 37, 15 (2025)

Zhang, J.; Alseekh, S.; Fernie, A. R.; Qian, D.; Huang, L.: Chemical Characterization of Lipids Provides New Insights into Goji Berry Metabolism. ACS Food Science & Technology 5 (2), pp. 761 - 769 (2025)

Alseekh, S.; Klemmer, A.; Yan, J.; Guo, T.; Fernie, A. R.: Embracing plant plasticity or robustness as a means of ensuring food security. Nature Communications 16 (1), 461 (2025)

Barros, J.A.S.; Nunes-Nesi, A.; Fernie, A. R.; Araújo, W.L.: Transcriptional crosstalk linking color, acidity, and aroma in peach. Trends in Plant Science (2025)

Casatejada-Anchel, R.; Torres-Moncho, A.; Anoman, A. D.; Budhagatapalli, N.; Pérez-Lorences, E.; Alcántara-Enguídanos, A.; Rosa-Téllez, S.; de Souza, L. P.; Kumlehn, J.; Fernie, A. R. et al.; Muñoz-Bertomeu, J.; Ros, R.: Metabolic engineering of the serine/glycine network as a means to improve the nitrogen content of crops. Plant Biotechnology Journal 23 (1), pp. 268 - 280 (2025)

Gramma, V.; Olas, J. J.; Zacharaki, V.; Ponnu, J.; Musialak-Lange, M.; Wahl, V.: Carbon and nitrogen signaling regulate FLOWERING LOCUS C and impact flowering time in Arabidopsis. Plant Physiology 197 (1), kiae594 (2025)

Hsieh, Y. E.; Tandon, K.; Verbruggen, H.; Nikoloski, Z.: Integration of metatranscriptomics data improves the predictive capacity of microbial community metabolic models. The ISME Journal 19 (1), wraf109 (2025)

Kappel, S.; Frieboes, M. J.; Yokoyama, R.; Kappel, C.; Tóth, S. Z.; Fernie, A. R.; Jahns, P.; Smirnoff, N.; Aarabi, F.; Armbruster, U.: Developmental and environmental effects on VTC2-dependent leaf ascorbate accumulation and functions. Journal of Experimental Botany, eraf035 (2025)

Lindner, S. N.; Ralser, M.: The ability of pentose pathways to form all essential metabolites provides clues to the origins of metabolism. PLOS Biology 23 (1), e3002996 (2025)