Publications of A. R. Fernie

Pires, M. V.; Pereira Junior, A. A.; Medeiros, D. B.; Daloso, D. M.; Pham, P. A.; Barros, K. A.; Engqvist, M. K. M.; Florian, A.; Krahnert, I.; Maurino, V. G. et al.; Araujo, W. L.; Fernie, A. R.: The influence of alternative pathways of respiration that utilize branched-chain amino acids following water shortage in Arabidopsis. Plant, Cell and Environment 39 (6), pp. 1304 - 1319 (2016)

Ruprecht, C.; Mendrinna, A.; Tohge, T.; Sampathkumar, A.; Klie, S.; Fernie, A. R.; Nikoloski, Z.; Persson, S.; Mutwil, M.: FamNet: A Framework to Identify Multiplied Modules Driving Pathway Expansion in Plants. Plant Physiology 170 (3), pp. 1878 - 1894 (2016)

Sajitz-Hermstein, M.; Töpfer, N.; Kleessen, S.; Fernie, A. R.; Nikoloski, Z.: iReMet-flux: constraint-based approach for integrating relative metabolite levels into a stoichiometric metabolic models. Bioinformatics 32 (17), pp. i755 - i762 (2016)

Sarnowska, E.; Gratkowska, D. M.; Sacharowski, S. P.; Cwiek, P.; Tohge, T.; Fernie, A. R.; Siedlecki, J. A.; Koncz, C.; Sarnowski, T. J.: The Role of SWI/SNF Chromatin Remodeling Complexes in Hormone Crosstalk. Trends in Plant Science 21 (7), pp. 594 - 608 (2016)

Schulz, E.; Tohge, T.; Zuther, E.; Fernie, A. R.; Hincha, D. K.: Flavonoids are determinants of freezing tolerance and cold acclimation in Arabidopsis thaliana. Scientific Reports 6, 34027 (2016)

Schwahn, K.; Küken, A.; Kliebenstein, D.J.; Fernie, A. R.; Nikoloski, Z.: Observability of plant metabolic networks is reflected in the correlation of metabolic profiles. Plant Physiology 172 (2), pp. 1324 - 1333 (2016)

Scossa, F.; Brotman, Y.; de Abreu e Lima, F.; Willmitzer, L.; Nikoloski, Z.; Tohge, T.; Fernie, A. R.: Genomics-based strategies for the use of natural variation in the improvement of crop metabolism. Plant Science 242, pp. 47 - 64 (2016)

Shaik, S. S.; Obata, T.; Hebelstrup, K. H.; Schwahn, K.; Fernie, A. R.; Mateiu, R. V.; Blennow, A.: Starch Granule Re-Structuring by Starch Branching Enzyme and Glucan Water Dikinase Modulation Affects Caryopsis Physiology and Metabolism. PLoS One 11 (2), e0149613 (2016)

Smith, S. R.; Gillard, J. T. F.; Kustka, A. B.; McCrow, J. P.; Badger, J. H.; Zheng, H.; New, A. M.; Dupont, C. L.; Obata, T.; Fernie, A. R. et al.; Allen, A. E.: Transcriptional Orchestration of the Global Cellular Response of a Model Pennate Diatom to Diel Light Cycling under Iron Limitation. PLoS Genetics 12 (12), 1006490 (2016)

Tohge, T.; Fernie, A. R.: Specialized metabolites of the flavonol class mediate root phototropism and growth. Molecular Plant 9 (12), pp. 1554 - 1555 (2016)

Tohge, T.; Wendenburg, R.; Ishihara, H.; Nakabayashi, R.; Watanabe, M.; Sulpice, R.; Hoefgen, R.; Takayama, H.; Saito, K.; Stitt, M. et al.; Fernie, A. R.: Characterization of a recently evolved flavonol-phenylacyltransferase gene provides signatures of natural light selection in Brassicaceae. Nature Communications 7, 12399 (2016)

Toubiana, D.; Xue, W.; Zhang, N.; Kremling, K.; Gur, A.; Pilosof, S.; Gibon, Y.; Stitt, M.; Buckler, E. S.; Fernie, A. R. et al.; Fait, A.: Correlation-Based Network Analysis of Metabolite and Enzyme Profiles Reveals a Role of Citrate Biosynthesis in Modulating N and C Metabolism in Zea mays. Frontiers in Plant Science 7, 1022 (2016)

Truffault, V.; Gest, N.; Garchery, C.; Florian, A.; Fernie, A. R.; Gautier, H.; Stevens, R.G.: Reduction of MDHAR activity in cherry tomato suppresses growth and yield and MDHAR activity is correlated with sugar levels under high light. Plant, Cell and Environment 39 (6), pp. 1279 - 1292 (2016)

Weiwei, W.; Liu, H.; Zhou, Y.; Jin, M.; Yang, N.; Li, D.; Luo, J.; Xiao, Y.; Pan, Q.; Tohge, T. et al.; Fernie, A. R.; Yan, J.: Combining Quantitative Genetics Approaches with Regulatory Network Analysis to Dissect the Complex Metabolism of the Maize Kernel. Plant Physiology 170 (1), pp. 136 - 146 (2016)

Wu, S.; Alseekh, S.; Cuadros-Inostroza, A. C.; Fusari, C. M.; Mutwil, M.; Kooke, R.; Keurentjes, J. B.; Fernie, A. R.; Willmitzer, L.; Brotman, Y.: Combined Use of Genome-Wide Association Data and Correlation Networks Unravels Key Regulators of Primary Metabolism in Arabidopsis thaliana. PLoS Genetics 12 (10), e1006363 (2016)

Bunik, V. I.; Artiukhov, A.; Kazantsev, A.; Goncalves, R.; Daloso, D. M.; Oppermann, H.; Kulakovskaya, E.; Lukashev, N.; Fernie, A. R.; Brand, M. et al.; Gaunitz, F.: Specific inhibition by synthetic analogs of pyruvate reveals that the pyruvate dehydrogenase reaction is essential for metabolism and viability of glioblastoma cells. Oncotarget 6 (37), pp. 40036 - 40052 (2015)

Daloso, D. M.; Antunes, W. C.; Pinheiro, D. P.; Waquim, J. P.; Araujo, W. L.; Loureiro, M. E.; Fernie, A. R.; Williams, T. C. R.: Tobacco guard cells fix CO2 by both Rubisco and PEPcase while sucrose acts as a substrate during light-induced stomatal opening. Plant, Cell and Environment 38 (11), pp. 2353 - 2371 (2015)

Liang, C.; Zhang, Y.; Cheng, S.; Osorio, S.; Sun, Y.; Fernie, A. R.; Cheung, C. Y. M.; Lim, B. L.: Impacts of high ATP supply from chloroplasts and mitochondria on the leaf metabolism of Arabidopsis thaliana. Frontiers in Plant Science 6, 922 (2015)

Monne, M.; Miniero, D. V.; Obata, T.; Daddabbo, L.; Palmieri, L.; Vozza, A.; Nicolardi, M. C.; Fernie, A. R.; Palmieri, F.: Functional characterization and organ distribution of three mitochondrial ATP-Mg/P-i carriers in Arabidopsis thaliana. Biochimica et Biophysica Acta-Bioenergetics 1847 (10), pp. 1220 - 1230 (2015)

Batushansky, A.; Kirma, M.; Grillich, N.; Pham, P. A.; Rentsch, D.; Galili, G.; Fernie, A. R.; Fait, A.: The transporter GAT1 plays an important role in GABA-mediated carbon-nitrogen interactions in Arabidopsis. Frontiers in Plant Science 6, 785 (2015)