Publications of A. R. Fernie

Feng, X.; Meng, D.; Wang, Y.; Fernie, A. R.; Bai, C.; He, X.; Tao, J.; Zhou, X.; Ren, Y.; Zuo, J. et al.; Zheng, Y.: Chlorine dioxide affects metabolism of harvested cauliflower. Postharvest Biology and Technology 230, 113735 (2025)

Fernie, A. R.: Spotlight on “Proximity proteomics reveals a mechanism of fatty acid transfer at lipid droplet-mitochondria- endoplasmic reticulum contact sites” by Bezawork-Geleta et al. 2025. Journal of Mitochondria, Plastids and Endosymbiosis 3 (1), 2493930 (2025)

Jia, X.; Zhang, X.; Chen, X.; Fernie, A. R.; Wen, W.: The horizontally transferred gene, CsMTAN, rewired purine traffic to build caffeine factories in tea leaves. Journal of Integrative Plant Biology (2025)

Rose, L. E.; Zangishei, Z.; Fernie, A. R.; Usadel, B.: Tomato genomics and its relatives are breaking the genomics barriers. Journal of Experimental Botany, eraf298 (2025)

Sacharowski, S.; Kubala, S.; Cwiek, P.; Steciuk, J.; Gratkowska-Zmuda, D.; Oksinska, P.; Bucior, E.; Rolicka, A.; Ciesla, M.; Nowicka, K. et al.; Alseekh, S.; Tohge, T.; Giavalisco, P.; Zugaj, D.; Stolze, S.; Harzen, A.; Franzen, R.; Huettel, B.; Grzesiuk, E.; Hajirezaei, M.; Nakagami, H.; Koncz, C.; Fernie, A. R.; Sarnowski, T.: BAF60/SWP73 subunits define subclasses of SWI/SNF chromatin remodelling complexes in Arabidopsis. New Phytologist 247 (2), pp. 791 - 812 (2025)

Dao, O.; Bertrand, M.; Alseekh, S.; Veillet, F.; Auroy, P.; Nguyen, P.-C.; Légeret, B.; Epting, V.; Morin, A.; Cuiné, S. et al.; Monteil, C. L.; Mackinder, L. C. M.; Burlacot, A.; Krieger-Liszkay, A.; Weber, A. P. M.; Fernie, A. R.; Peltier, G.; Li-Beisson, Y.: The green algae CO2 concentrating mechanism and photorespiration jointly operate during acclimation to low CO2. Nature Communications 16, 5296 (2025)

de Oliveira, P.; de Souza, L. P.; Ferreira, P.; Mauxion, J.; da Silva, L.; Chang, A.; Saleme, M.; Zhu, F.; Garcia, S.; De Beukelaer, H. et al.; Martins, M.; Rosado-Souza, L.; Pino, L.; Bollier, N.; Peres, L.; Vandepoele, K.; Goossens, A.; Gonzalez, N.; Fernie, A. R.; Eloy, N.: Modulating the activity of the APC/C regulator SISAMBA improves the sugar and antioxidant content of tomato fruits. Plant Biotechnology Journal (2025)

Karakas, E.; Bulut, M.; Fernie, A. R.: Metabolome guided treasure hunt - lerning from metabolic diversity. Journal of Plant Physiology 309, 154494 (2025)

Karakas, E.; Bulut, M.; Fernie, A. R.: The use of web resources for metabolomics in horticultural crops. Horticulture Advances 3, 18 (2025)

Qin, K.; Liu, F.; Zhang, C.; Deng, R.; Fernie, A. R.; Zhang, Y.: Systems and synthetic biology for plant natural product pathway elucidation. Cell Reports Methods 44 (6), 115715 (2025)

Swain, J.; Fernie, A. R.; Foyer, C.H.; Gupta, K.J.: The Multifaceted Metabolic Role of Lactate Dehydrogenase in Submergence Tolerance. Plant, Cell and Environment (2025)

Tiozon, R. J. N.; Ong, G.; Sartagoda, K.; Duque, S.; Alseekh, S.; Bonto, A.; Gempesaw, S. J.; Pratap, V.; Reginio, F. J.; Tengco, J. et al.; Seagan, C.; Tolentino, J.; Santiago, D.; Fernie, A. R.; Sreenivasulu, N.: Optimization of phenolic extraction method and in vitro bioaccessibility of microencapsulated pigmented rice bran extracts and their antioxidant and anticancer properties. FOOD HYDROCOLLOIDS FOR HEALTH 7, 100221 (2025)

von Steimker, J.; Wendenburg, R.; Klemmer, A.; Rosaria, M.; Fernie, A. R.; Alseekh, S.; Tripodi, P.: Genome-wide association analysis and linkage mapping decipher the genetic control of primary metabolites and quality traits in Capsicum. The Plant Journal 122 (6), e70300 (2025)

da Luz, L.M.; Valente, L.M.L.; Medeiros, D.B.; Batista-Silva, W.; da Costa, L.C.; Oliveira, F.S.; Martins, S.C.V.; Fernie, A. R.; Nunes-Nesi, A.; Araújo, W.L.: Functional lack of SLAC1 modifies guard cell metabolism without impacting photosynthesis under elevated [CO2] and moderated water restriction. Environmental and Experimental Botany 233, 106142 (2025)

Fernie, A. R.; Bulut, M.: Design of future climate smart crops by engineering heat stress-responsive gene expression. Molecular Plant 18 (5), pp. 738 - 740 (2025)

Flexas, J.; Fernie, A. R.; Usadel, B.; Alonso-Forn, D.; Ardiles, V.; Ball, M. C.; Ballesteros, D.; Bravo, L.; Brodribb, T. J.; Carriquí, M. et al.; Castanyer-Mallol, F.; Cavieres, L. A.; Chondol, T.; Clemente-Moreno, M. J.; Coopman, R. E.; Corcuera, L.; De Vries, J.; Diaz-Espejo, A.; Dolezal, J.; Ergo, V.; Fernández, H.; Fernández-Marín, B.; Galmes, J.; García-Plazaola, J. I.; Quintanilla, L. G.; Gulías, J.; Hernández, A.; Luo, K.; Martínez-Abaigar, J.; Nadal, M.; Niinemets, Ü.; Núñez-Olivera, M. E.; Ostria-Gallardo, E.; Perera-Castro, A. V.; Pérez-López, U.; Ribas-Carbo, M.; Roig-Oliver, M.; Rojas, R.; Sáez, P.; Tosens, T.; Viveros, R.; Xiong, D.; Yan, J.; Zhang, Y.; Gago, J.: What can we learn from the ecophysiology of plants inhabiting extreme environments?: from ‘sherplants’ to ‘shercrops’. Journal of Experimental Botany, eraf236 (2025)

Minen, R. I.; Camalle, M. D.; Schwertfeger, T. J.; Abdulhakim, F.; Reish, H.; Perez de Souza, L.; Moreno, J. C.; Schilmiller, A.; Thirumalaikumar, V. P.; Agarwal, P. et al.; Plecki, C. F.; Fernie, A. R.; Hirt, H.; Schroeder, F. C.; Skirycz, A.: Characterization of the cyclic dipeptide cyclo(His-Pro) in Arabidopsis. Plant Physiology 198 (1), kiaf174 (2025)

Nejamkin, A.; Oneto, C.; Zhang, Y.; Luquet, M.; Galatro, A.; Del Castello, F.; Massa, G.; Feingold, S.; Fernie, A. R.; Lamattina, L. et al.; Correa-Aragunde, N.; Foresi, N.: Metabolic Profiling Reveals Increased Nitrogen Remobilization in Potato Plants that Express a Cyanobacterial NO/NO3-Producing Enzyme. Journal of Plant Growth Regulation (2025)

Wang, Z.; He, Y.; Zhao, M.; Liu, X.-Q.; Lin, H.; Shi, Y.; Zhang, K.; Lei, G.; Lai, D.; Liu, T. et al.; Peng, X.; He, J.; Li, W.; Wang, X.; Woo, S.-H.; Quinet, M.; Fernie, A. R.; Huang, X.-Y.; Zhou, M.: Genome-Wide Association Studies Reveal the Genetic Architecture of Ionomic Variation in Grains of Tartary Buckwheat. Advanced Science 12 (17), 2412291 (2025)

Fernie, A. R.; Martinez-Rivas, F.: Br(e)aking the tomato fruit size-sweetness trade-off. Trends in Plant Science 30 (4), pp. 350 - 351 (2025)