Publications of J. Kopka

Ebert, B., Zoller, D., Erban, A., Fehrle, I., Hartmann, J., Niehl, A., Kopka, J. & Fisahn, J. Metabolic profiling of Arabidopsis thaliana epidermal cells. Journal of Experimental Botany 61, 1321–1335 (2010).

Girin, T., El-Kafafi, E. S., Widiez, T., Erban, A., Hubberten, H.-M., Kopka, J., Hoefgen, R., Gojon, A. & Lepetit, M. Identification of Arabidopsis Mutants Impaired in the Systemic Regulation of Root Nitrate Uptake by the Nitrogen Status of the Plant. Plant Physiology 153, 1250–1260 (2010).

Hofmann, J., El Ashry, A., Anwar, S., Erban, A., Kopka, J. & Grundler, F. Metabolic profiling reveals local and systemic responses of host plants to nematode parasitism. Plant Journal 62, 1058–1071 (2010).

Hummel, J., Strehmel, N., Selbig, J., Walther, D. & Kopka, J. Decision tree supported substructure prediction of metabolites from GC-MS profiles. Metabolomics 6, 322–333 (2010).

Korn, M., Gärtner, T., Erban, A., Kopka, J., Selbig, J. & Hincha, D. K. Predicting Arabidopsis Freezing Tolerance and Heterosis in Freezing Tolerance from Metabolite Composition. Molecular Plant 3, 224–235 (2010).

Lugan, R., Niogret, M. F., Leport, L., Guegan, J. P., Larher, F. R., Savoure, A., Kopka, J. & Bouchereau, A. Metabolome and water homeostasis analysis of Thellungiella salsuginea suggests that dehydration tolerance is a key response to osmotic stress in this halophyte. Plant Journal 64, 215–229 (2010).

Parveen, I., Moorby, J. M., Fraser, M. D., Erban, A. & Kopka, J. Relationship between Grazing Lamb Growth Rate and Blood Plasma Analytes as Profiled by Gas Chromatography with Time-of-Flight Mass Spectrometry (GC-TOF/MS). Journal of Agricultural and Food Chemistry 58, 913–917 (2010).

Sanchez, D. H., Szymanski, J., Erban, A., Udvardi, M. K. & Kopka, J. Mining for robust transcriptional and metabolic responses to long-term salt stress: a case study on the model legume Lotus japonicus. Plant Cell and Environment 33, 468–480 (2010).

Steinfath, M., Strehmel, N., Peters, R., Schauer, N., Groth, D., Hummel, J., Steup, M., Selbig, J., Kopka, J., Geigenberger, P. & van Dongen, J. T. Discovering plant metabolic biomarkers for phenotype prediction using an untargeted approach. Plant Biotechnology Journal 8, 900–911 (2010).

Strassburg, K., Walther, D., Takahashi, H., Kanaya, S. & Kopka, J. Dynamic Transcriptional and Metabolic Responses in Yeast Adapting to Temperature Stress. Omics-a Journal of Integrative Biology 14, 249–259 (2010).

Strehmel, N., Praeger, U., Koenig, C., Fehrle, I., Erban, A., Geyer, M., Kopka, J. & van Dongen, J. T. Time course effects on primary metabolism of potato (Solanum tuberosum) tuber tissue after mechanical impact. Postharvest Biology and Technology 56, 109–116 (2010).

Walther, D., Strassburg, K., Durek, P. & Kopka, J. Metabolic Pathway Relationships Revealed by an Integrative Analysis of the Transcriptional and Metabolic Temperature Stress-Response Dynamics in Yeast. OMICS: A Journal of Integrative Biology 14, 261–274 (2010).

Weichert, N., Saalbach, I., Weichert, H., Kohl, S., Erban, A., Kopka, J., Hause, B., Varshney, A., Sreenivasulu, N., Strickert, M., Kumlehn, J., Weschke, W. & Weber, H. Increasing Sucrose Uptake Capacity of Wheat Grains Stimulates Storage Protein Synthesis. Plant Physiology 152, 698–710 (2010).

Wulff-Zottele, C., Gatzke, N., Kopka, J., Orellana, A., Hoefgen, R., Fisahn, J. & Hesse, H. Photosynthesis and metabolism interact during acclimation of Arabidopsis thaliana to high irradiance and sulphur depletion. Plant Cell and Environment 33, 1974–1988 (2010).

Allwood, J. W., Erban, A., de Koning, S., Dunn, W. B., Lüdemann, A., Lommen, A., Kay, L., Loscher, R., Kopka, J. & Goodacre, R. Inter-laboratory reproducibility of fast gas chromatography-electron impact-time of flight mass spectrometry (GC-EI-TOF/MS) based plant metabolomics. Metabolomics 5, 479–496 (2009).

Fuehrs, H., Goetze, S., Specht, A., Erban, A., Gallien, S., Heintz, D., van Dorsselaer, A., Kopka, J., Braun, H. P. & Horst, W. J. Characterization of leaf apoplastic peroxidases and metabolites in Vigna unguiculata in response to toxic manganese supply and silicon. Journal of Experimental Botany 60, 1663–1678 (2009).

Hernandez, G., Valdes-Lopez, O., Ramirez, M., Goffard, N., Weiller, G., Aparicio-Fabre, R., Fuentes, S. I., Erban, A., Kopka, J., Udvardi, M. K. & Vance, C. P. Global Changes in the Transcript and Metabolic Profiles during Symbiotic Nitrogen Fixation in Phosphorus-Stressed Common Bean Plants. Plant Physiology 151, 1221–1238 (2009).

Kempa, S., Hummel, J., Schwemmer, T., Pietzke, M., Strehmel, N., Wienkoop, S., Kopka, J. & Weckwerth, W. An automated GCxGC-TOF-MS protocol for batch-wise extraction and alignment of mass isotopomer matrixes from differential C-13-labelling experiments: a case study for photoautotrophic-mixotrophic grown Chlamydomonas reinhardtii cells. Journal of Basic Microbiology 49, 82–91 (2009).

Lugan, R., Niogret, M. F., Kervazo, L., Larher, F. R., Kopka, J. & Bouchereau, A. Metabolome and water status phenotyping of Arabidopsis under abiotic stress cues reveals new insight into ESK1 function. Plant Cell and Environment 32, 95–108 (2009).

Mrosk, C., Forner, S., Hause, G., Kuester, H., Kopka, J. & Hause, B. Composite Medicago truncatula plants harbouring Agrobacterium rhizogenes-transformed roots reveal normal mycorrhization by Glomus intraradices. Journal of Experimental Botany 60, 3797–3807 (2009).