Publications of Alisdair Fernie

401.

Journal Article

Alseekh, S.; Scossa, F.; Fernie, A. R.: Mobile Transposable Elements Shape Plant Genome Diversity. Trends in Plant Science 25 (11), pp. 1062 - 1064 (2020)

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402.

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Alves, R. D. F. B.; Menezes-Silva, P. E.; Sousa, L. F.; Loram-Lourenco, L.; Silva, M. L. F.; Almeida, S. E. S.; Silva, F. G.; de Souza, L. P.; Fernie, A. R.; Farnese, F. S.: Evidence of drought memory in Dipteryx alata indicates differential acclimation of plants to savanna conditions. Scientific Reports 10 (1), 16455 (2020)

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403.

Journal Article

Artiukhov V, A.; Grabarska, A.; Gumbarewicz, E.; Aleshin, V. A.; Kaehne, T.; Obata, T.; Kazantsev V, A.; Lukashev V, N.; Stepulak, A.; Fernie, A. R. et al.; Bunik I, V.: Synthetic analogues of 2-oxo acids discriminate metabolic contribution of the 2-oxoglutarate and 2-oxoadipate dehydrogenases in mammalian cells and tissues. Scientific Reports 10 (1), 1886 (2020)

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404.

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Aucique-Pérez, C.E.; Resende, R.S.; Martins, A.O.; Silveira, P.R.; Cavalcanti, J.H.F.; Vieira, N.M.; Fernie, A. R.; Araújo, W.L.; DaMatta, F.M.; Rodrigues, F.Á.: How do wheat plants cope with Pyricularia oryzae infection? A physiological and metabolic approach. Planta 252 (2), 24 (2020)

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405.

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Bianchetti, R.; De Luca, B.; de Haro, L.A.; Rosado, D.; Demarco, D.; Conte, M.; Bermudez, L.; Freschi, L.; Fernie, A. R.; Michaelson, L.V. et al.; Haslam, R.P.; Rossi, M.; Carrari, F.: Phytochrome-Dependent Temperature Perception Modulates Isoprenoid Metabolism. Plant Physiology 183 (3), pp. 869 - 882 (2020)

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406.

Journal Article

Breitel, D.; Brett, P.; Alseekh, S.; Fernie, A. R.; Butelli, E.; Martin, C.: Metabolic engineering of tomato fruit enriched in L-DOPA. Metabolic Engineering 65, pp. 185 - 196 (2020)

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407.

Journal Article

Chen, J.; Hu, X.; Shi, T.; Yin, H.; Sun, D.; Hao, Y.; Xia, X.; Luo, J.; Fernie, A. R.; He, Z. et al.; Chen, W.: Metabolite-based genome-wide association study enables dissection of the flavonoid decoration pathway of wheat kernels. Plant Biotechnology Journal 18 (8), pp. 1722 - 1735 (2020)

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408.

Journal Article

Chen, M.-X.; Zhang, Y.; Fernie, A. R.; Liu, Y.-G.; Zhu, F.-Y.: SWATH-MS-Based Proteomics: Strategies and Applications in Plants. Trends in Biotechnology 39 (5), pp. 433 - 437 (2020)

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409.

Journal Article

Chen, M.-X.; Zhu, F.-Y.; Gao, B.; Ma, K.-L.; Zhang, Y.; Fernie, A. R.; Chen, X.; Dai, L.; Ye, N.-H.; Zhang, X. et al.; Tian, Y.; Zhang, D.; Xiao, S.; Zhang, J.; Liu, Y.-G.: Full-length transcript-based proteogenomics of rice improves its genome and proteome annotation. Plant Physiology 182 (3), pp. 1510 - 1526 (2020)

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410.

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Clemente-Moreno, M.; Omranian, N.; Sáez, P.; Figueroa, C.; Del-Saz, N.; Elso, M.; Poblete, L.; Orf, I.; Cuadros-Inostroza, A.; Cavieres, L.A. et al.; Bravo, L.; Fernie, A. R.; Ribas-Carbó, M.; Flexas, J.; Nikoloski, Z.; Brotman, Y.; Gago, J.: Low temperature tolerance of the Antarctic species Deschampsia antarctica: a complex metabolic response associated with nutrient remobilization. Plant, Cell and Environment 43 (6), pp. 1376 - 1393 (2020)

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411.

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Correa, S. M.; Alseekh, S.; Atehortúa, L.; Brotman, Y.; Ríos-Estepa, R.; Fernie, A. R.; Nikoloski, Z.: Model-assisted identification of metabolic engineering strategies for Jatropha curcas lipid pathways. The Plant Journal (accepted)

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412.

Journal Article

Correa, S. M.; Fernie, A. R.; Nikoloski, Z.; Brotman, Y.: Towards model-driven characterization and manipulation of plant lipid metabolism. Progress in Lipid Research 80, 101051 (2020)

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413.

Journal Article

da Fonseca-Pereira, P.; Souza, P. V.L.; Hou, L.-Y.; Schwab, S.; Geigenberger, P.; Nunes-Nesi, A.; Timm, S.; Fernie, A. R.; Thormählen, I.; Araújo, W. L. et al.; Daloso, D. M.: Thioredoxin h2 contributes to the redox regulation of mitochondrial photorespiratory metabolism. Plant, Cell and Environment 43 (1), pp. 188 - 208 (2020)

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414.

Journal Article

de Souza, L. P.; Borghi, M.; Fernie, A. R.: Plant single‐cell metabolomics—challenges and perspectives. International Journal of Molecular Sciences 21 (23), pp. 1 - 17 (2020)

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415.

Journal Article

de Souza, L. P.; Garbowicz, K.; Brotman, Y.; Tohge, T.; Fernie, A. R.: The acetate pathway supports flavonoid and lipid biosynthesis in Arabidopsis. Plant Physiology 182 (2), pp. 857 - 869 (2020)

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416.

Journal Article

Devkar, V.; Thirumalaikumar, V. P.; Xue, G.-P.; Vallarino, J. G.; Turečková, V.; Strnad, M.; Fernie, A. R.; Hoefgen, R.; Mueller-Roeber, B.; Balazadeh, S.: Multifaceted regulatory function of tomato SlTAF1 in the response to salinity stress. New Phytologist 225 (4), pp. 1681 - 1698 (2020)

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417.

Journal Article

Diretto, G.; Frusciante, S.; Fabbri, C.; Schauer, N.; Busta, L.; Wang, Z.; Matas, A. J.; Fiore, A.; Rose, J. K.C.; Fernie, A. R. et al.; Jetter, R.; Mattei, B.; Giovannoni, J.; Giuliano, G.: Manipulation of β-carotene levels in tomato fruits results in increased ABA content and extended shelf-life. Plant Biotechnology Journal 18 (5), pp. 1185 - 1199 (2020)

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418.

Journal Article

Fàbregas, N.; Yoshida, T.; Fernie, A. R.: Role of Raf-like kinases in SnRK2 activation and osmotic stress response in plants. Nature Communications 11, 6184 (2020)

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419.

Journal Article

Feitosa-Araujo, E.; Chaves, I. d. S.; Florian, A.; da Fonseca-Pereira, P.; Apfata, J. A. C.; Heyneke, E.; Medeiros, D.B.; Pires, M. V.; Mettler-Altmann, T.; Neuhaus, H. E. et al.; Palmieri, F.; Araújo, W. L.; Obata, T.; Weber, A. P. M.; Linka, N.; Fernie, A. R.; Nunes-Nesi, A.: Down-regulation of a Mitochondrial NAD+ Transporter (NDT2) Alters Seed Production and Germination in Arabidopsis. Plant and Cell Physiology 61 (5), pp. 897 - 908 (2020)

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420.

Journal Article

Fernandez-Marin, B.; Nadal, M.; Gago, J.; Fernie, A. R.; Lopez-Pozo, M.; Artetxe, U.; Garcia-Plazaola, J. I.; Verhoeven, A.: Born to revive: molecular and physiological mechanisms of double tolerance in a paleotropical and resurrection plant. New Phytologist 226 (3), pp. 741 - 759 (2020)

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421.

Journal Article

Fernie, A. R.: Degrading to inhibit: a role for Phytochrome Initiation Factors in determining hypocotyl growth under UV-B. The Plant Journal 101 (3), pp. 505 - 506 (2020)

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422.

Journal Article

Fernie, A. R.; Alseekh, S.: Tomato multiomics at aPEELing resolution. Nature Plants 6 (12), pp. 1394 - 1395 (2020)

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423.

Journal Article

Fernie, A. R.; Alseekh, S.: Publisher Correction: Tomato multiomics at aPEELing resolution (Nature Plants, (2020), 10.1038/s41477-020-00807-8). Nature Plants 6, 1506 (2020)

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424.

Journal Article

Fernie, A. R.; Bauwe, H.: Wasteful, essential, evolutionary stepping stone? The multiple personalities of the photorespiratory pathway. The Plant Journal (accepted)

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425.

Journal Article

Fernie, A. R.; Yan, J.: Targeting Key Genes to Tailor Old and New Crops for a Greener Agriculture. Molecular Plant 13 (3), pp. 354 - 356 (2020)

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426.

Journal Article

Fernie, A. R.; Zhang, Y.; Sampathkumar, A.: Cytoskeleton Architecture Regulates Glycolysis Coupling Cellular Metabolism to Mechanical Cues. Trends in biochemical sciences 45 (8), pp. 637 - 638 (2020)

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427.

Journal Article

Ferrari, C.; Shivhare, D.; Hansen, B. O.; Pasha, A.; Esteban, E.; Provart, N. J.; Kragler, F.; Fernie, A. R.; Tohge, T.; Mutwil, M.: Expression Atlas of Selaginella moellendorffii Provides Insights into the Evolution of Vasculature, Secondary Metabolism, and Roots. The Plant Cell 32 (4), pp. 853 - 870 (2020)

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428.

Journal Article

Florez-Sarasa, I.; Fernie, A. R.; Gupta, K.J.: Does the alternative respiratory pathway offer protection against the adverse effects resulting from climate change? Journal of Experimental Botany 71 (2), pp. 465 - 469 (2020)

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429.

Journal Article

Florez-Sarasa, I.; Jose Clemente-Moreno, M.; Cifre, J.; Capo, M.; Llompart, M.; Fernie, A. R.; Bota, J.: Differences in Metabolic and Physiological Responses between Local and Widespread Grapevine Cultivars under Water Deficit Stress. Agronomy 10 (7), 1052 (2020)

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430.

Journal Article

Fraser, P. D.; Aharoni, A.; Hall, R. D.; Huang, S.; Giovannoni, J. J.; Sonnewald, U.; Fernie, A. R.: Metabolomics should be deployed in identification and characterization of gene-edited crops. The Plant Journal (accepted)

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431.

Journal Article

Gago, J.; Estrany, J.; Estes, L.; Fernie, A. R.; Alorda, B.; Brotman, Y.; Flexas, J.; Escalona, J. M.; Medrano, H.: Nano and Micro Unmanned Aerial Vehicles (UAVs): A New Grand Challenge for Precision Agriculture? Current Protocols in Plant Biology 5 (1), e20103 (2020)

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432.

Journal Article

Gechev, T.; Georgiev, M. I.; Fernie, A. R.: PlantaSyst: Teaming up for Systems Biology and Biotechnology. Trends in Plant Science 25 (7), pp. 621 - 624 (2020)

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433.

Journal Article

Guo, L.-X.; Hussain, S.B.; Fernie, A. R.; Liu, Y.-Z.; Yan, M.; Chen, H.; Alam, S.M.: Multiomic Analysis Elucidates the Reasons Underlying the Differential Metabolite Accumulation in Citrus Mature Leaves and Fruit Juice Sacs. Journal of Agricultural and Food Chemistry 68, pp. 11863 - 11874 (2020)

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434.

Journal Article

Gutsch, A.; Hendrix, S.; Guerriero, G.; Renaut, J.; Lutts, S.; Alseekh, S.; Fernie, A. R.; Hausman, J.-F.; Vangronsveld, J.; Cuypers, A. et al.; Sergeant, K.: Long-Term Cd Exposure Alters the Metabolite Profile in Stem Tissue of Medicago sativa. Cells 9 (12), 2707 (2020)

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435.

Journal Article

Hu, C.; Rao, J.; Song, Y.; Chan, S.-A.; Tohge, T.; Cui, B.; Lin, H.; Fernie, A. R.; Zhang, D.; Shi, J.: Dissection of flag leaf metabolic shifts and their relationship with those occurring simultaneously in developing seed by application of non-targeted metabolomics. PLoS One 15 (1), e0227577 (2020)

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436.

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Huang, J.; Lu, G.; Liu, L.; Raihan, M.S.; Xu, J.; Jian, L.; Zhao, L.; Tran, T.M.; Zhang, Q.; Liu, J. et al.; Li, W.; Wei, C.; Braun, D.M.; Li, Q.; Fernie, A. R.; Jackson, D.; Yan, J.: The Kernel Size-Related Quantitative Trait Locus qKW9 Encodes a Pentatricopeptide Repeat Protein That Aaffects Photosynthesis and Grain Filling. Plant Physiology 183 (4), pp. 1696 - 1709 (2020)

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437.

Journal Article

Hussain, S. B.; Shi, C.-Y.; Guo, L.-X.; Du, W.; Bai, Y.-X.; Kamran, H. M.; Fernie, A. R.; Liu, Y.-Z.: Type I H+-pyrophosphatase regulates the vacuolar storage of sucrose in citrus fruit. Journal of Experimental Botany 71 (19), pp. 5935 - 5947 (2020)

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438.

Journal Article

Jia, X.; Zhang, W.; Fernie, A. R.; Wen, W.: Camellia sinensis (Tea). Trends in Genetics 37 (2), pp. 201 - 202 (2020)

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439.

Journal Article

Jiao, C.; Sørensen, I.; Sun, X.; Sun, H.; Behar, H.; Alseekh, S.; Philippe, G.; Palacio Lopez, K.; Sun, L.; Reed, R. et al.; Jeon, S.; Kiyonami, R.; Zhang, S.; Fernie, A. R.; Brumer, H.; Domozych, D. S.; Fei, Z.; Rose, J. K.C.: The Penium margaritaceum Genome: Hallmarks of the Origins of Land Plants. Cell 181 (5), pp. 1097 - 1111.e12 (2020)

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440.

Journal Article

Kanojia, A.; Gupta, S.; Benina, M.; Fernie, A. R.; Mueller-Roeber, B.; Gechev, T.; Dijkwel, P. P.: Developmentally controlled changes during Arabidopsis leaf development indicate causes for loss of stress tolerance with age. Journal of Experimental Botany 71 (20), pp. 6340 - 6354 (2020)

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441.

Journal Article

Karagiannis, E.; Michailidis, M.; Tanou, G.; Scossa, F.; Sarrou, E.; Stamatakis, G.; Samiotaki, M.; Martens, S.; Fernie, A. R.; Molassiotis, A.: Decoding altitude-activated regulatory mechanisms occurring during apple peel ripening. Horticulture Research 7 (1), 120 (2020)

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442.

Journal Article

Karagiannis, E.; Tanou, G.; Scossa, F.; Samiotaki, M.; Michailidis, M.; Manioudaki, M.; Laurens, F.; Job, D.; Fernie, A. R.; Orsel, M. et al.; Molassiotis, A.: Systems-Based Approaches to Unravel Networks and Individual Elements Involved in Apple Superficial Scald. Frontiers in Plant Science 11, 8 (2020)

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443.

Journal Article

Kleine, T.; Nägele, T.; Neuhaus, H. E.; Schmitz-Linneweber, C.; Fernie, A. R.; Geigenberger, P.; Grimm, B.; Kaufmann, K.; Klipp, E.; Meurer, J. et al.; Möhlmann, T.; Mühlhaus, T.; Naranjo, B.; Nickelsen, J.; Richter, A.; Ruwe, H.; Schroda, M.; Schwenkert, S.; Trentmann, O.; Willmund, F.; Zoschke, R.; Leister, D.: Acclimation in plants – the Green Hub consortium. The Plant Journal 106 (1), pp. 23 - 40 (2020)

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444.

Journal Article

Li, Y.; Chen, Y.; Zhou, L.; You, S.; Deng, H.; Chen, Y.; Alseekh, S.; Yuan, Y.; Fu, R.; Zhang, Z. et al.; Su, D.; Fernie, A. R.; Bouzayen, M.; Ma, T.; Liu, M.; Zhang, Y.: MicroTom Metabolic Network: Rewiring Tomato Metabolic Regulatory Network throughout the Growth Cycle. Molecular Plant 13 (8), pp. 1203 - 1218 (2020)

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445.

Journal Article

Liu, H.; Jian, L.; Xu, J.; Zhang, Q.; Zhang, M.; Jin, M.; Peng, Y.; Yan, J.; Han, B.; Liu, J. et al.; Gao, F.; Liu, X.; Huang, L.; Wei, W.; Ding, Y.; Yang, X.; Li, Z.; Zhang, M.; Sun, J.; Bai, M.; Song, W.; Chen, H.; Sun, X.; Li, W.; Lu, Y.; Liu, Y.; Zhao, J.; Qian, Y.; Jackson, D.; Fernie, A. R.; Yan, J.: High-Throughput CRISPR/Cas9 Mutagenesis Streamlines Trait Gene Identification in Maize. The Plant Cell 32 (5), pp. 1397 - 1413 (2020)

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446.

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Llorente, B.; Torres-Montilla, S.; Morelli, L.; Florez-Sarasa, I.; Matus, J. T.; Ezquerro, M.; D´Andrea, L.; Houhou, F.; Majer, E.; Pico, B. et al.; Cebolla, J.; Troncoso, A.; Fernie, A. R.; Daros, J.-A.; Rodriguez-Concepcion, M.: Synthetic conversion of leaf chloroplasts into carotenoid-rich plastids reveals mechanistic basis of natural chromoplast development. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 117 (35), pp. 21796 - 21803 (2020)

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447.

Journal Article

McQuinn, R.P.; Gapper, N.E.; Gray, A.G.; Zhong, S.; Tohge, T.; Fei, Z.; Fernie, A. R.; Giovannoni, J.J.: Manipulation of ZDS in tomato exposes carotenoid- and ABA-specific effects on fruit development and ripening. Plant Biotechnology Journal 18 (11), pp. 2210 - 2224 (2020)

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448.

Journal Article

Medeiros, D.B.; Barros, J. A.S.; Fernie, A. R.; Araújo, W. L.: Eating Away at ROS to Regulate Stomatal Opening. Trends in Plant Science 25 (3), pp. 220 - 223 (2020)

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449.

Journal Article

Obata, T.; Klemens, P.A.W.; Rosado-Souza, L.; Schlereth, A.; Gisel, A.; Stavolone, L.; Zierer, W.; Morales, N.; Mueller, L.A.; Zeeman, S.C. et al.; Ludewig, F.; Stitt, M.; Sonnewald, U.; Neuhaus, H.E.; Fernie, A. R.: Metabolic profiles of six African cultivars of cassava (Manihot esculenta Crantz) highlight bottlenecks of root yield. The Plant Journal 102 (6), pp. 1202 - 1219 (2020)

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450.

Journal Article

Omidbakhshfard, M. A.; Sujeeth, N.; Gupta, S.; Omranian, N.; Guinan, K.J.; Brotman, Y.; Nikoloski, Z.; Fernie, A. R.; Mueller-Roeber, B.; Gechev, T.S.: A Biostimulant Obtained from the Seaweed Ascophyllum nodosum Protects Arabidopsis thaliana from Severe Oxidative Stress. International Journal of Molecular Sciences 21 (2), 474 (2020)

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Journal Article (1112)