Publications of Alisdair Fernie

Max Planck Institute of Molecular Plant Physiology

Journal Article (1112)

251.

Journal Article

Wang, Y.; Li, W.; Wang, L.; Yan, J.; Lu, G.; Yang, N.; Xu, J.; Wang, Y.; Gui, S.; Chen, G. et al.; Li, S.; Wu, C.; Guo, T.; Xiao, Y.; Warburton, M. L.; Fernie, A. R.; Dresselhaus, T.; Yan, J.: Three types of genes underlying the Gametophyte factor1 locus cause unilateral cross incompatibility in maize. Nature Communications 13 (1), 4498 (2022)

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252.

Journal Article

Feitosa-Araujo, E.; da Fonseca-Pereira, P.; Pena, M.; Lana-Costa, J.; Coelho, D.; Silva, F.; Medeiros, D.B.; Linka, N.; Araujo, W.; Weber, A. et al.; Fernie, A. R.; Nunes-Nesi, A.: Mitochondrial and peroxisomal NAD(+) uptake are important for improved photosynthesis and seed yield under elevated CO2 concentrations. The Plant Journal 111 (3), pp. 713 - 730 (2022)

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253.

Journal Article

Ishihara, H.; Alseekh, S.; Feil, R.; Perera, P.; George, G. M.; Niedzwiecki, P.; Arrivault, S.; Zeeman, S. C.; Fernie, A. R.; Lunn, J. E. et al.; Smith, A. M.; Stitt, M.: Rising rates of starch degradation during daytime and trehalose 6-phosphate optimize carbon availability. Plant Physiology 189 (4), pp. 1976 - 2000 (2022)

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254.

Journal Article

Otero, S.; Gildea, I.; Roszak, P.; Lu, Y.; Di Vittori, V.; Bourdon, M.; Kalmbach, L.; Blob, B.; Heo, J.-o.; Peruzzo, F. et al.; Laux, T.; Fernie, A. R.; Tavares, H.; Helariutta, Y.: A root phloem pole cell atlas reveals common transcriptional states in protophloem-adjacent cells. Nature Plants 8, pp. 954 - 970 (2022)

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255.

Journal Article

Martinez Rivas, F.J.; Blanco-Portales, R.; Molina-Hidalgo, F.; Caballero, J.; de Souza, L. P.; Alseekh, S.; Fernie, A. R.; Munoz-Blanco, J.; Rodriguez-Franco, A.: Azacytidine arrests ripening in cultivated strawberry (Fragaria x ananassa) by repressing key genes and altering hormone contents. BMC Plant Biology 22 (1), 278 (2022)

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256.

Journal Article

Pereira, A. M.; Martins, A. O.; Batista-Silva, W.; Condori-Apfata, J. A.; Nascimento, V. L.; Silva, V. F.; Oliveira, L. A.; Medeiros, D.B.; Martins, S. C. V.; Fernie, A. R. et al.; Nunes-Nesi, A.; Araújo, W. L.: Elevated carbon assimilation and metabolic reprogramming in tomato high pigment mutants support the increased production of pigments. Plant Cell Reports 41, pp. 1907 - 1929 (2022)

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257.

Journal Article

Martinez Rivas, F.J.; Blanco-Portales, R.; Moyano, E.; Alseekh, S.; Caballero, J. L.; Schwab, W.; Fernie, A. R.; Muñoz-Blanco, J.; Molina-Hidalgo, F. J.: Strawberry fruit FanCXE1 carboxylesterase is involved in the catabolism of volatile esters during the ripening process. Horticulture Research 9, uhac095 (2022)

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258.

Journal Article

Sageman-Furnas, K.; Nurmi, M.; Contag, M.; Plötner, B.; Alseekh, S.; Wiszniewski, A.A.G.; Fernie, A. R.; Smith, L. M.; Laitinen, R. A.: A. thaliana Hybrids Develop Growth Abnormalities Through Integration of Stress, Hormone and Growth Signalling. Plant and Cell Physiology 63 (7), pp. 944 - 954 (2022)

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259.

Journal Article

Batista-Silva, W.; de Oliveira; Carvalho, A.; Oliveira Martins, A.; Siqueira, J. A.; Rodrigues-Salvador, A.; Omena-Garcia, R. P.; Medeiros, D.B.; Peres, L. E. P.; Ribeiro, D. M. et al.; Zsögön, A.; Fernie, A. R.; Nunes-Nesi, A.; Araújo, W. L.: Reduced auxin signalling through the cyclophilin DIAGEOTROPICA impacts tomato fruit development and metabolism during ripening. Journal of Experimental Botany 73 (12), pp. 4113 - 4128 (2022)

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260.

Journal Article

Tabatabaei, I.; Alseekh, S.; Shahid, M.; Leniak, E.; Wagner, M.; Mahmoudi, H.; Thushar, S.; Fernie, A. R.; Murphy, K. M.; Schmöckel, S. M. et al.; Tester, M.; Mueller-Roeber, B.; Skirycz, A.; Balazadeh, S.: The diversity of quinoa morphological traits and seed metabolic composition. Scientific Data 9 (1), 323 (2022)

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261.

Journal Article

Salem, M.A.; El-Shiekh, R. A.; Fernie, A. R.; Alseekh, S.; Zayed, A.: Metabolomics-based profiling for quality assessment and revealing the impact of drying of Turmeric (Curcuma longa L.). Scientific Reports 12 (1), 10288 (2022)

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262.

Journal Article

Del-Saz, N.; Iglesias-Sanchez, A.; Alonso-Forn, D.; Lopez-Gomez, M.; Palma, F.; Clemente-Moreno, M.; Fernie, A. R.; Ribas-Carbo, M.; Florez-Sarasa, I.: The Lack of Alternative Oxidase 1a Restricts in vivo Respiratory Activity and Stress-Related Metabolism for Leaf Osmoprotection and Redox Balancing Under Sudden Acute Water and Salt Stress in Arabidopsis thaliana. FRONTIERS IN PLANT SCIENCE 13, 833113 (2022)

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263.

Journal Article

Yokoyama, R.; de Oliveira, M.V.V.; Takeda-Kimura, Y.; Ishihara, H.; Alseekh, S.; Arrivault, S.; Kukshal, V.; Jez, J.M.; Stitt, M.; Fernie, A. R. et al.; Maeda, H.A.: Point mutations that boost aromatic amino acid production and CO2 assimilation in plants. Science Advances 8 (23), eabo3416 (2022)

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264.

Journal Article

Jiang, C.; Sun, J.; Li, R.; Yan, S.; Chen, W.; Guo, L.; Qin, G.; Wang, P.; Luo, C.; Huang, W. et al.; Zhang, Q.; Fernie, A. R.; Jackson, D.; Li, X.; Yan, J.: A reactive oxygen species burst causes haploid induction in maize. Molecular Plant 15 (6), pp. 943 - 955 (2022)

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265.

Journal Article

Alseekh, S.; Zhu, F.; Vallarino, J. G.; Sokolowska, E.; Yoshida, T.; Bergmann, S.; Wendenburg, R.; Bolze, A.; Skirycz, A.; Avin-Wittenberg, T. et al.; Fernie, A. R.: Autophagy modulates the metabolism and growth of tomato fruit during development. Horticulture Research 9, uhac129 (2022)

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266.

Journal Article

Fernie, A. R.: Cultivated strawberry HANABA TARANU: a tale of transcription factors, raging hormones, and asexual reproduction. The Plant Journal 110 (5), pp. 1235 - 1236 (2022)

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267.

Journal Article

Li, P.; Ye, Z.; Fu, J.; Xu, Y.; Shen, Y.; Zhang, Y.; Tang, D.; Li, P.; Zuo, H.; Tong, W. et al.; Wang, S.; Fernie, A. R.; Zhao, J.: CsMYB184 regulates caffeine biosynthesis in tea plants. Plant Biotechnology Journal 20 (6), pp. 1012 - 1014 (2022)

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268.

Journal Article

Powell, A. F.; Feder, A.; Li, J.; Schmidt, M. H.-W.; Courtney, L.; Alseekh, S.; Jobson, E. M.; Vogel, A.; Xu, Y.; Lyon, D. et al.; Dumschott, K.; McHale, M.; Sulpice, R.; Bao, K.; Lal, R.; Duhan, A.; Hallab, A.; Denton, A. K.; Bolger, M. E.; Fernie, A. R.; Hind, S. R.; Mueller, L. A.; Martin, G. B.; Fei, Z.; Martin, C.; Giovannoni, J. J.; Strickler, S. R.; Usadel, B.: A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity. The Plant Journal 110 (6), pp. 1791 - 1810 (2022)

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269.

Journal Article

Skirycz, A.; Fernie, A. R.: Past accomplishments and future challenges of the multi-omics characterization of leaf growth. Plant Physiology 189 (2), pp. 473 - 489 (2022)

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270.

Journal Article

Wang, S.; Li, Y.; He, L.; Yang, J.; Fernie, A. R.; Luo, J.: Natural variance at the interface of plant primary and specialized metabolism. Current Opinion in Plant Biology 67, 102201 (2022)

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271.

Journal Article

Stefan, T.; Wu, X.; Zhang, Y.; Fernie, A. R.; Schulze, W.: Regulatory Modules of Metabolites and Protein Phosphorylation in Arabidopsis Genotypes With Altered Sucrose Allocation. Frontiers in Plant Science 13, 891405 (2022)

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272.

Journal Article

Li, P.; Xia, E.; Fu, J.; Xu, Y.; Zhao, X.; Tong, W.; Tang, Q.; Tadege, M.; Fernie, A. R.; Zhao, J.: Diverse roles of MYB transcription factors in regulating secondary metabolite biosynthesis, shoot development, and stress responses in tea plants (Camellia sinensis). The Plant Journal 110 (4), pp. 1144 - 1165 (2022)

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273.

Journal Article

Rodrigues-Salvador, A.; Lana-Costa, J.; Omena-Garcia, R.P.; Batista-Silva, W.; Scossa, F.; Rosado-Souza, L.; Pérez-Díaz, J.L.; Menezes-Silva, P.E.; DaMatta, F.M.; Sulpice, R. et al.; Araújo, W.L.; Zsögön, A.; Fernie, A. R.; Nunes-Nesi, A.: Metabolic shifts during fruit development in pungent and non-pungent peppers. Food Chemistry 375, 131850 (2022)

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274.

Journal Article

Amanda, D.; Frey, F. P.; Neumann, U.; Przybyl, M.; Šimura, J.; Zhang, Y.; Chen, Z.; Gallavotti, A.; Fernie, A. R.; Ljung, K. et al.; Acosta, I. F.: Auxin boosts energy generation pathways to fuel pollen maturation in barley. Current Biology 32 (8), pp. 1798 - 1811 (2022)

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275.

Journal Article

Siqueira, J.; Wakin, T.; Batista-Silva, W.; Silva, J.; Vicente, M.; Silva, J.; Clarindo, W.; Zsogon, A.; Peres, L.; De Veylder, L. et al.; Fernie, A. R.; Nunes-Nesi, A.; Araujo, W.: A long and stressful day: Photoperiod shapes aluminium tolerance in plants. Journal of Hazardous Materials 432, 128704 (2022)

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276.

Journal Article

Einhardt, A.M.; Oliveira, L.M.; Ferreira, S.; Araújo, W.L.; Medeiros, D.B.; Fernie, A. R.; Rodrigues, F.Á.: Defense responses and oxidative metabolism of glyphosate-resistant soybean plants infected by Phakopsora pachyrhizi modulated by glyphosate and nickel. Physiological and Molecular Plant Pathology 118, 101817 (2022)

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277.

Journal Article

Luo, Y.; Zhang, M.; Liu, Y.; Liu, J.; Li, W.; Chen, G.; Peng, Y.; Jin, M.; Wei, W.; Jian, L. et al.; Yan, J.; Fernie, A. R.; Yan, J.: Genetic variation in YIGE1 contributes to ear length and grain yield in maize. New Phytologist 234 (2), pp. 513 - 526 (2022)

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278.

Journal Article

Naves, E. R.; Scossa, F.; Araújo, W. L.; Nunes-Nesi, A.; Fernie, A. R.; Zsögön, A.: Heterosis and reciprocal effects for agronomic and fruit traits in Capsicum pepper hybrids. Scientia Horticulturae 295, 110821 (2022)

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279.

Journal Article

Sreenivasulu, N.; Fernie, A. R.: Diversity: current and prospective secondary metabolites for nutrition and medicine. Current Opinion in Biotechnology 74, pp. 164 - 170 (2022)

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280.

Journal Article

Zhu, F.; Wijesingha Ahchige, M.; Brotman, Y.; Alseekh, S.; Zsögön, A.; Fernie, A. R.: Bringing more players into play: Leveraging stress in genome wide association studies. Journal of Plant Physiology 271, 153657 (2022)

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281.

Journal Article

Chen, W.; Chen, L.; Zhang, X.; Guo, N. Y.; Wan, M.; Zhao, X.; Yin, P.; Cai, L.; Xu, J.; Zhang, L. et al.; Han, Y.; Xiao, Y.; Xu, G.; Wang, Y.; Wang, S.; Wu, S.; Yang, F.; Jackson, D.; Cheng, J.; Chen, S.; Sun, C.; Qin, F.; Tian, F.; Fernie, A. R.; Li, J.; Yan, J.; Yang, X.: Convergent selection of a WD40 protein that enhances grain yield in maize and rice. Science 375 (6587), eabg7985 (2022)

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282.

Journal Article

Chen, M.; Huang, W.; Yin, Z.; Zhang, W.; Kong, Q.; Wu, S.; Li, W.; Bai, Z.; Fernie, A. R.; Huang, X. et al.; Yan, S.: Environmentally-driven metabolite and lipid variations correspond to altered bioactivities of black wolfberry fruit. Food Chemistry 372, 131342 (2022)

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283.

Journal Article

Borghi, M.; Arrivault, S.; Günther, M.; Medeiros, D.B.; Dell'Aversana, E.; Fusco, G.; Carillo, P.; Ludwig, M.; Fernie, A. R.; Lunn, J. E. et al.; Stitt, M.: Metabolic profiles in C-3, C-3-C-4 intermediate, C-4-like, and C-4 species in the genus Flaveria. Journal of Experimental Botany 73 (5), pp. 1581 - 1601 (2022)

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284.

Journal Article

Fernie, A. R.: On the role of transposons in balancing drought tolerance and yield. Trends in Plant Science 28 (3), pp. 262 - 263 (2022)

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285.

Journal Article

Rui, G.; Bourceret, A.; Guan, R.; Dorau, K.; Mansfeldt, T.; Omidbakhshfard, M. A.; Medeiros, D.B.; Fernie, A. R.; Hofmann, J.; Sonnewald, U. et al.; Mayer, J.; Gerlach, N.; Bucher, M.; Garrido-Oter, R.; Spaepen, S.; Schulze-Lefert, P.: Maize Field Study Reveals Covaried Microbiota and Metabolic Changes in Roots over Plant Growth. mBio 13 (2), e02584-21 (2022)

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286.

Journal Article

Skirycz, A.; Caldana, C.; Fernie, A. R.: Regulation of Plant Primary Metabolism - How Results From Novel Technologies Are Extending Our Understanding From Classical Targeted Approaches. Critical Reviews in Plant Sciences 41 (1), pp. 32 - 51 (2022)

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287.

Journal Article

Zhang, Z.; Shi, Q.; Wang, B.; Ma, A.; Wang, Y.; Xue, Q.; Shen, B.; Hamaila, H.; Tang, T.; Qi, X. et al.; Fernie, A. R.; Luo, J.; Li, X.: Jujube metabolome selection determined the edible properties acquired during domestication. The Plant Journal 109 (5), pp. 1116 - 1133 (2022)

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288.

Journal Article

Fernie, A. R.; Alseekh, S.: Metabolomic selection–based machine learning improves fruit taste prediction. Proceedings of the National Academy of Sciences of the United States of America 199 (9), e2201078119 (2022)

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289.

Journal Article

Salem, M.A.; Aborehab, N.; Al-Karmalawy, A.; Fernie, A. R.; Alseekh, S.; Ezzat, S.: Potential Valorization of Edible Nuts By-Products: Exploring the Immune-Modulatory and Antioxidants Effects of Selected Nut Shells Extracts in Relation to Their Metabolic Profiles. Antioxidants: open access journal 11 (3), 462 (2022)

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290.

Journal Article

Salem, M.A.; Ezzat, S.M.; Ahmed, K.A.; Alseekh, S.; Fernie, A. R.; Essam, R.M.: A Comparative Study of the Antihypertensive and Cardioprotective Potentials of Hot and Cold Aqueous Extracts of Hibiscus sabdariffa L. in Relation to Their Metabolic Profiles. Frontiers in Pharmacology 13, 840478 (2022)

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291.

Journal Article

Rocchetti, L.; Gioia, T.; Logozzo, G.; Brezeanu, C.; Pereira, L. G.; la Rosa; De, L.; Marzario, S.; Pieri, A.; Fernie, A. R. et al.; Alseekh, S.; Susek, K.; Cook, D. R.; Varshney, R. K.; Agrawal, S. K.; Hamwieh, A.; Bitocchi, E.; Papa, R.: Towards the Development, Maintenance and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Chickpea. Current Protocols 2 (2), e371 (2022)

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292.

Journal Article

Gao, Y.; Thiele, W.; Saleh, O.; Scossa, F.; Aarabi, F.; Zhang, H.; Sampathkumar, A.; Kühn, K.; Fernie, A. R.; Bock, R. et al.; Schöttler, M. A.; Zoschke, R.: Chloroplast translational regulation uncovers nonessential photosynthesis genes as key players in plant cold acclimation. Plant Cell 34 (5), pp. 2056 - 2079 (2022)

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293.

Journal Article

Fernie, A. R.; Zhang, Y.: The Bacillus subtilis glutamate anti-metabolon. Nature Metabolism 4 (2), pp. 161 - 162 (2022)

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294.

Journal Article

Yang, C.; Shen, S.; Zhou, S.; Li, Y.; Mao, Y.; Zhou, J.; Shi, Y.; An, L.; Zhou, Q.; Peng, W. et al.; Lyu, Y.; Liu, X.; Chen, W.; Wang, S.; Qu, L.; Liu, X.; Fernie, A. R.; Luo, J.: Rice metabolic regulatory network spanning its entire life cycle. Molecular Plant 15 (2), pp. 258 - 275 (2022)

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295.

Journal Article

Fernie, A. R.: Asserting dominance: the subgenome networks underlying Canola seed development. The Plant Journal 109 (3), pp. 475 - 476 (2022)

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296.

Journal Article

Lemaire-Chamley, M.; Koutouan, C.; Jorly, J.; Assali, J.; Yoshida, T.; Nogueira, M.; Tohge, T.; Ferrand, C.; Peres, L.; Asamizu, E. et al.; Ezura, H.; Fraser, P.; Hajirezaei, M.; Fernie, A. R.; Rothan, C.: A Chimeric TGA Repressor Slows Down Fruit Maturation and Ripening in Tomato. Plant and Cell Physiology 63 (1), pp. 120 - 134 (2022)

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297.

Journal Article

Koschmieder, J.; Alseekh, S.; Shabani, M.; Baltenweck, R.; Maurino, V. G.; Palme, K.; Fernie, A. R.; Hugueney, P.; Welsch, R.: Color recycling: metabolization of apocarotenoid degradation products suggests carbon regeneration via primary metabolic pathways. Plant Cell Reports 41, pp. 961 - 977 (2022)

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298.

Journal Article

Mi, J.; Vallarino, J. G.; Petřík, I.; Novák, O.; Correa, S. M.; Kosmacz, M.; Havaux, M.; Rodriguez-Concepcion, M.; Al-Babili, S.; Fernie, A. R. et al.; Skirycz, A.; Moreno, J.C.: A manipulation of carotenoid metabolism influence biomass partitioning and fitness in tomato. Metabolic Engineering 70, pp. 166 - 180 (2022)

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299.

Journal Article

Simeoni, F.; Skirycz, A.; Simoni, L.; Castorina, G.; de Souza, L. P.; Fernie, A. R.; Alseekh, S.; Giavalisco, P.; Conti, L.; Tonelli, C. et al.; Galbiati, M.: The AtMYB60 transcription factor regulates stomatal opening by modulating oxylipin synthesis in guard cells. Scientific Reports 12 (1), 533 (2022)

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300.

Journal Article

Da Fonseca-Pereira, P.; Souza, P.V.L.; Fernie, A. R.; Timm, S.; Daloso, D.M.; Araújo, W.L.: Erratum: Thioredoxin-mediated regulation of (photo)respiration and central metabolism (Journal of Experimental Botany (2021) 72:17 (5987-6002) DOI: 10.1093/jxb/erab098). Journal of Experimental Botany 73 (5), 1653 (2022)

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