Max Planck Institute of Molecular Plant Physiology

Publications of Alisdair Fernie

Journal Article (1112)

1.

Journal Article

Fernie, A. R.: Spotlight on “Proximity proteomics reveals a mechanism of fatty acid transfer at lipid droplet-mitochondria- endoplasmic reticulum contact sites” by Bezawork-Geleta et al. 2025. Journal of Mitochondria, Plastids and Endosymbiosis 3 (1), 2493930 (2025)

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2.

Journal Article

Sacharowski, S.; Kubala, S.; Cwiek, P.; Steciuk, J.; Gratkowska-Zmuda, D.; Oksinska, P.; Bucior, E.; Rolicka, A.; Ciesla, M.; Nowicka, K. et al.; Alseekh, S.; Tohge, T.; Giavalisco, P.; Zugaj, D.; Stolze, S.; Harzen, A.; Franzen, R.; Huettel, B.; Grzesiuk, E.; Hajirezaei, M.; Nakagami, H.; Koncz, C.; Fernie, A. R.; Sarnowski, T.: BAF60/SWP73 subunits define subclasses of SWI/SNF chromatin remodelling complexes in Arabidopsis. New Phytologist 247 (2), pp. 791 - 812 (2025)

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3.

Journal Article

Dao, O.; Bertrand, M.; Alseekh, S.; Veillet, F.; Auroy, P.; Nguyen, P.-C.; Légeret, B.; Epting, V.; Morin, A.; Cuiné, S. et al.; Monteil, C. L.; Mackinder, L. C. M.; Burlacot, A.; Krieger-Liszkay, A.; Weber, A. P. M.; Fernie, A. R.; Peltier, G.; Li-Beisson, Y.: The green algae CO2 concentrating mechanism and photorespiration jointly operate during acclimation to low CO2. Nature Communications 16, 5296 (2025)

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4.

Journal Article

de Oliveira, P.; de Souza, L. P.; Ferreira, P.; Mauxion, J.; da Silva, L.; Chang, A.; Saleme, M.; Zhu, F.; Garcia, S.; De Beukelaer, H. et al.; Martins, M.; Rosado-Souza, L.; Pino, L.; Bollier, N.; Peres, L.; Vandepoele, K.; Goossens, A.; Gonzalez, N.; Fernie, A. R.; Eloy, N.: Modulating the activity of the APC/C regulator SISAMBA improves the sugar and antioxidant content of tomato fruits. Plant Biotechnology Journal (2025)

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5.

Journal Article

Karakas, E.; Bulut, M.; Fernie, A. R.: Metabolome guided treasure hunt - lerning from metabolic diversity. Journal of Plant Physiology 309, 154494 (2025)

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6.

Journal Article

Karakas, E.; Bulut, M.; Fernie, A. R.: The use of web resources for metabolomics in horticultural crops. Horticulture Advances 3, 18 (2025)

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7.

Journal Article

Qin, K.; Liu, F.; Zhang, C.; Deng, R.; Fernie, A. R.; Zhang, Y.: Systems and synthetic biology for plant natural product pathway elucidation. Cell Reports Methods 44 (6), 115715 (2025)

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8.

Journal Article

Swain, J.; Fernie, A. R.; Foyer, C.H.; Gupta, K.J.: The Multifaceted Metabolic Role of Lactate Dehydrogenase in Submergence Tolerance. Plant, Cell and Environment (2025)

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9.

Journal Article

Tiozon, R. J. N.; Ong, G.; Sartagoda, K.; Duque, S.; Alseekh, S.; Bonto, A.; Gempesaw, S. J.; Pratap, V.; Reginio, F. J.; Tengco, J. et al.; Seagan, C.; Tolentino, J.; Santiago, D.; Fernie, A. R.; Sreenivasulu, N.: Optimization of phenolic extraction method and in vitro bioaccessibility of microencapsulated pigmented rice bran extracts and their antioxidant and anticancer properties. FOOD HYDROCOLLOIDS FOR HEALTH 7, 100221 (2025)

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10.

Journal Article

da Luz, L.M.; Valente, L.M.L.; Medeiros, D.B.; Batista-Silva, W.; da Costa, L.C.; Oliveira, F.S.; Martins, S.C.V.; Fernie, A. R.; Nunes-Nesi, A.; Araújo, W.L.: Functional lack of SLAC1 modifies guard cell metabolism without impacting photosynthesis under elevated [CO2] and moderated water restriction. Environmental and Experimental Botany 233, 106142 (2025)

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11.

Journal Article

Fernie, A. R.; Bulut, M.: Design of future climate smart crops by engineering heat stress-responsive gene expression. Molecular Plant 18 (5), pp. 738 - 740 (2025)

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12.

Journal Article

Flexas, J.; Fernie, A. R.; Usadel, B.; Alonso-Forn, D.; Ardiles, V.; Ball, M. C.; Ballesteros, D.; Bravo, L.; Brodribb, T. J.; Carriquí, M. et al.; Castanyer-Mallol, F.; Cavieres, L. A.; Chondol, T.; Clemente-Moreno, M. J.; Coopman, R. E.; Corcuera, L.; De Vries, J.; Diaz-Espejo, A.; Dolezal, J.; Ergo, V.; Fernández, H.; Fernández-Marín, B.; Galmes, J.; García-Plazaola, J. I.; Quintanilla, L. G.; Gulías, J.; Hernández, A.; Luo, K.; Martínez-Abaigar, J.; Nadal, M.; Niinemets, Ü.; Núñez-Olivera, M. E.; Ostria-Gallardo, E.; Perera-Castro, A. V.; Pérez-López, U.; Ribas-Carbo, M.; Roig-Oliver, M.; Rojas, R.; Sáez, P.; Tosens, T.; Viveros, R.; Xiong, D.; Yan, J.; Zhang, Y.; Gago, J.: What can we learn from the ecophysiology of plants inhabiting extreme environments?: from ‘sherplants’ to ‘shercrops’. Journal of Experimental Botany, eraf236 (2025)

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13.

Journal Article

Minen, R. I.; Camalle, M. D.; Schwertfeger, T. J.; Abdulhakim, F.; Reish, H.; Perez de Souza, L.; Moreno, J. C.; Schilmiller, A.; Thirumalaikumar, V. P.; Agarwal, P. et al.; Plecki, C. F.; Fernie, A. R.; Hirt, H.; Schroeder, F. C.; Skirycz, A.: Characterization of the cyclic dipeptide cyclo(His-Pro) in Arabidopsis. Plant Physiology 198 (1), kiaf174 (2025)

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14.

Journal Article

Nejamkin, A.; Oneto, C.; Zhang, Y.; Luquet, M.; Galatro, A.; Del Castello, F.; Massa, G.; Feingold, S.; Fernie, A. R.; Lamattina, L. et al.; Correa-Aragunde, N.; Foresi, N.: Metabolic Profiling Reveals Increased Nitrogen Remobilization in Potato Plants that Express a Cyanobacterial NO/NO3-Producing Enzyme. Journal of Plant Growth Regulation (2025)

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15.

Journal Article

Wang, Z.; He, Y.; Zhao, M.; Liu, X.-Q.; Lin, H.; Shi, Y.; Zhang, K.; Lei, G.; Lai, D.; Liu, T. et al.; Peng, X.; He, J.; Li, W.; Wang, X.; Woo, S.-H.; Quinet, M.; Fernie, A. R.; Huang, X.-Y.; Zhou, M.: Genome-Wide Association Studies Reveal the Genetic Architecture of Ionomic Variation in Grains of Tartary Buckwheat. Advanced Science 12 (17), 2412291 (2025)

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16.

Journal Article

Fernie, A. R.; Martinez-Rivas, F.: Br(e)aking the tomato fruit size-sweetness trade-off. Trends in Plant Science 30 (4), pp. 350 - 351 (2025)

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17.

Journal Article

Fernie, A. R.; Zhu, F.: Chemical disarmament in plant defense: Erucamide blocks bacterial type III injectisome assembly. Developmental Cell 60 (8), pp. 1140 - 1141 (2025)

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18.

Journal Article

Li, Y.; Yang, Z.; Li, K.; Yang, C.; Lei, L.; Li, J.; Zhou, J.; Hou, H.; Liu, H.; Xiong, X. et al.; Zhan, C.; Shen, S.; Liu, X.; Maher, M.; Ahmad, H.; Fernie, A. R.; Luo, J.: Two major rice loci determine rice-staple food populations differences in vitamin B1 deficiency levels. Science Bulletin 70 (7), pp. 1046 - 1050 (2025)

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19.

Journal Article

Martins, A. O.; Silva, W. A.; Vallarino, J. G.; Omena-Garcia, R. P.; Osorio, S.; Fernie, A. R.; Nunes-Nesi, A.; Ribeiro, D. M.; Araújo, W. L.: Reductions of endogenous gibberellin content impact fruit development and modify tomato fruit metabolism during ripening. Plant Growth Regulation 105, pp. 497 - 514 (2025)

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20.

Journal Article

Müller, C.; dos Anjos, L.; Freire, F.B.S.; Fernie, A. R.; Daloso, D.M.; Eller, C.B.; Merchant, A.: Metabolic network plasticity underpins Eucalyptus water use efficiency under drought. Environmental and Experimental Botany 232, 106127 (2025)

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21.

Journal Article

Raza, A.; Anas, M.; Bhardwaj, S.; Mir, R.A.; Charagh, S.; Elahi, M.; Zhang, X.; Mir, R.R.; Weckwerth, W.; Fernie, A. R. et al.; Siddique, K.H.M.; Hu, Z.; Varshney, R.K.: Harnessing metabolomics for enhanced crop drought tolerance. The Crop Journal 13 (2), pp. 311 - 327 (2025)

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22.

Journal Article

Sweetlove, L.; Ratcliffe, R.; Fernie, A. R.: Non-canonical plant metabolism. Nature Plants 11, pp. 696 - 708 (2025)

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23.

Journal Article

Wu, S.; Zhang, Y.; Luzarowska, U.; Yang, L.; Salem, M.A.; Thirumalaikumar , V. P.; Sade, N.; Galperin, V. E.; Fernie, A. R.; Sampathkumar, A. et al.; Bershtein, S.; Fusari, C. M.; Brotman, Y.: The homeostasis of β-alanine is key for Arabidopsis reproductive growth and development. The Plant Journal 122 (1), e70134 (2025)

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24.

Journal Article

Decros, G.; Fernie, A. R.: Spotlight on “Inhibition of mitochondrial energy production leads to reorganisation of the plant endomembrane system” by Wang et al. 2025. Journal of Mitochondria, Plastids and Endosymbiosis 3 (1), 2483404 (2025)

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25.

Journal Article

Decros, G.; Zhang, Y.; Fernie, A. R.: Mitochondrial support of high rates of photosynthesis. Plant Communications 6 (3), 101285 (2025)

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26.

Journal Article

Omena-Garcia, R.P.; Vallarino, J.G.; da Fonseca-Pereira, P.; Martins, A.O.; Brandão, P.M.; Ribeiro, D.M.; Osorio, S.; Fernie, A. R.; Araújo, W.L.; Nunes-Nesi, A.: Reciprocal grafting reveals the role of gibberellins in tomato root-shoot communication. Journal of Plant Physiology 306, 154444 (2025)

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27.

Journal Article

Qiu, Y.; Liu, L.; Yan, J.; Xiang, X.; Wang, S.; Luo, Y.; Deng, K.; Xu, J.; Jin, M.; Wu, X. et al.; Liwei Cheng; Zhou, Y.; Xie, W.; Liu, H.-J.; Fernie, A. R.; Hu, X.; Yan, J.: Precise engineering of gene expression by editing plasticity. Genome Biology 26, 51 (2025)

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28.

Journal Article

Timm, S.; Florian, A.; Alseekh, S.; Jahnke, K.; Hagemann, M.; Fernie, A. R.; Bauwe, H.: Improved photorespiration has a major impact on the root metabolome of Arabidopsis. Physiologia Plantarum 177 (2), e70142 (2025)

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29.

Journal Article

Zhang, W.; Tariq, A.; Jia, X.; Yan, J.; Fernie, A. R.; Usadel, B.; Wen, W.: Plant sperm cell sequencing for genome phasing and determination of meiotic crossover points. Nature Protocols 20, pp. 690 - 708 (2025)

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30.

Journal Article

Figueiredo, Y.G.; Gasparini, K.; Bulut, M.; Fernie, A. R.; Zsögön, A.: The genetic basis of prickle loss in the Solanaceae. Trends in Plant Science 30 (2) (2025)

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31.

Journal Article

Novello, M.; Bustamante, C.; Svetaz, L.; Goldy, C.; Valentini, G.; Drincovich, M.; Brotman, Y.; Fernie, A. R.; Lara, M.: Integrated Metabolomic, Lipidomic and Proteomic Analysis Define the Metabolic Changes Occurring in Curled Areas in Leaves With Leaf Peach Curl Disease. Plant, Cell and Environment 48 (2), pp. 1179 - 1200 (2025)

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32.

Journal Article

Priego-Cubero, S.; Knoch, E.; Wang, Z.; Alseekh, S.; Braun, K.-H.; Chapman, P.; Fernie, A. R.; Liu, C.; Becker, C.: Subfunctionalization and epigenetic regulation of a biosynthetic gene cluster in Solanaceae. Proceedings of the National Academy of Sciences of the United States of America 122 (8), e2420164122 (2025)

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33.

Journal Article

Siqueira, J.; Martins, A.; Wakin, T.; Silva, M.; Batista-Silva, W.; Brito, F.; Zsögön, A.; Fernie, A. R.; Nunes-Nesi, A.; Araújo, W.: The Modulation of Growth and Metabolism in Solanum lycopersicum Contrast With the Leaf-Specific Regulation of Wild Tomato Species. Plant, Cell and Environment 48 (2), pp. 1201 - 1214 (2025)

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34.

Journal Article

Urrea-Castellanos, R.; Calderan-Rodrigues, M.J.; Artins, A.; Musialak-Lange, M.; Macharanda-Ganesh, A.; Fernie, A. R.; Wahl, V.; Caldana, C.: The Regulatory-associated protein of target of rapamycin 1B (RAPTOR 1B) interconnects with the photoperiod pathway to promote flowering in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America 122 (6), e2405536122 (2025)

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35.

Journal Article

Vicente, R.; Fernie, A. R.; Uberegui, E.: High-throughput screening of wheat leaf dark respiration identifies significant genetic control. Journal of Experimental Botany 76 (4), pp. 904 - 908 (2025)

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36.

Journal Article

Yin, H.; Liu, W.; Hu, X.; Jia, J.; Liu, M.; Wei, J.; Cheng, Y.; Gong, X.; Li, Q.; Yan, W. et al.; Jia, J.; Gao, L.; Fernie, A. R.; Chen, W.: A wheat phytohormone atlas spanning major tissues across the entire life cycle provides novel insights into cytokinin and jasmonic acid interplay. Molecular Plant 18 (2), pp. 366 - 382 (2025)

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37.

Journal Article

Yoshida, T.; Fernie, A. R.: The protein phosphatases of abscisic acid coreceptors mediate carbon metabolism in Arabidopsis. Theoretical and Experimental Plant Physiology 37, 15 (2025)

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38.

Journal Article

Zhang, J.; Alseekh, S.; Fernie, A. R.; Qian, D.; Huang, L.: Chemical Characterization of Lipids Provides New Insights into Goji Berry Metabolism. ACS Food Science & Technology 5 (2), pp. 761 - 769 (2025)

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39.

Journal Article

Alseekh, S.; Klemmer, A.; Yan, J.; Guo, T.; Fernie, A. R.: Embracing plant plasticity or robustness as a means of ensuring food security. Nature Communications 16 (1), 461 (2025)

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40.

Journal Article

Barros, J.A.S.; Nunes-Nesi, A.; Fernie, A. R.; Araújo, W.L.: Transcriptional crosstalk linking color, acidity, and aroma in peach. Trends in Plant Science (2025)

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41.

Journal Article

Casatejada-Anchel, R.; Torres-Moncho, A.; Anoman, A. D.; Budhagatapalli, N.; Pérez-Lorences, E.; Alcántara-Enguídanos, A.; Rosa-Téllez, S.; de Souza, L. P.; Kumlehn, J.; Fernie, A. R. et al.; Muñoz-Bertomeu, J.; Ros, R.: Metabolic engineering of the serine/glycine network as a means to improve the nitrogen content of crops. Plant Biotechnology Journal 23 (1), pp. 268 - 280 (2025)

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42.

Journal Article

Kappel, S.; Frieboes, M. J.; Yokoyama, R.; Kappel, C.; Tóth, S. Z.; Fernie, A. R.; Jahns, P.; Smirnoff, N.; Aarabi, F.; Armbruster, U.: Developmental and environmental effects on VTC2-dependent leaf ascorbate accumulation and functions. Journal of Experimental Botany, eraf035 (2025)

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43.

Journal Article

Liu, M.-Y.; Jiao, Z.; Lou, H.; Tang, D.; Tian, X.; Zhou, B.-W.; Ruan, J.; Fernie, A. R.; Zhang, Q.: A glutamine synthetase-DOF transcription factor module regulates N remobilization from source to sink tissues in tea plants. Plant Physiology 197 (1), kiae644 (2025)

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44.

Journal Article

López, C.; Alseekh, S.; Rivas, F.; Fernie, A. R.; Prieto, P.; Alamillo, J.: CRISPR/Cas9 editing of two adenine phosphoribosyl transferase coding genes reveals the functional specialization of adenine salvage proteins in common bean. Journal of Experimental Botany 76 (2), pp. 346 - 362 (2025)

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45.

Journal Article

López-Tubau, J.; Laibach, N.; Burciaga-Monge, A.; Alseekh, S.; Deng, C.; Fernie, A. R.; Altabella, T.; Ferrer, A.: Differential impact of impaired steryl ester biosynthesis on the metabolome of tomato fruits and seeds. Physiologia Plantarum 177 (1), e70022 (2025)

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46.

Journal Article

Nascimento, C.P.; da Fonseca-Pereira, P.; Ferreira-Silva, M.; Rosado-Souza, L.; Linka, N.; Fernie, A. R.; Araújo, W.L.; Nunes-Nesi, A.: Functional analysis of the extraplastidial TRX system in germination and early stages of development of Arabidopsis thaliana. Plant Science 350, 112310 (2025)

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47.

Journal Article

Tiozon, R. J. N.; Pasion-Uy, E.; Alseekh, S.; Sartagoda, K. J. D.; Gempesaw, S.; Tolentino, J. H. G.; Fernie, A. R.; Sreenivasulu, N.: Lipidomics-based association study reveals genomic signatures of anti-cancer qualities of pigmented rice sprouts. Frontiers in Plant Science 16, 1533442 (2025)

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48.

Journal Article

Wu, S.; Zhang, S.; Liu, C.-M.; Fernie, A. R.; Yan, S.: Recent Advances in Mass Spectrometry-based Protein Interactome Studies. Molecular & Cellular Proteomics 24 (1), 100887 (2025)

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49.

Journal Article

Yu, Y.; Li, W.; Liu, Y.; Liu, Y.; Zhang, Q.; Ouyang, Y.; Ding, W.; Xue, Y.; Zou, Y.; Yan, J. et al.; Jia, A.; Yan, J.; Hao, X.; Gou, Y.; Zhai, Z.; Liu, L.; Zheng, Y.; Zhang, B.; Xu, J.; Yang, N.; Xiao, Y.; Zhuo, L.; Lai, Z.; Yin, P.; Liu, H.-J.; Fernie, A. R.; Jackson, D.; Yan, J.: A Zea genus-specific micropeptide controls kernel dehydration in maize. Cell 188, pp. 44 - 59 (2025)

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50.

Journal Article

D'Auria, J.C.; Fernie, A. R.: The BAHD and the bold: the mitochondria's role in alkaloid artistry. Trends in Plant Science 29 (12), pp. 1290 - 1291 (2024)

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