Journal Article (138)

101.
Journal Article
Arnold, A.; Nikoloski, Z.: In search for an accurate model of the photosynthetic carbon metabolism. Mathematics and Computers in Simulation 96, pp. 171 - 194 (2014)
102.
Journal Article
Florian, A.; Timm, S.; Nikoloski, Z.; Tohge, T.; Bauwe, H.; Araujo, W. L.; Fernie, A. R.: Analysis of metabolic alterations in Arabidopsis following changes in the carbon dioxide and oxygen partial pressures. Journal of Integrative Plant Biology 56 (9 - SI), pp. 941 - 959 (2014)
103.
Journal Article
Heise, R.; Arrivault, S.; Szecowka, M.; Tohge, T.; Nunes-Nesi, A.; Stitt, M.; Nikoloski, Z.; Fernie, A. R.: Flux profiling of photosynthetic carbon metabolism in intact plants. Nature Protocols 9 (8), pp. 1803 - 1824 (2014)
104.
Journal Article
Klie, S.; Nikoloski, Z.; Selbig, J.: Biological Cluster Evaluation for Gene Function Prediction. Journal of Computational Biology 21 (6), pp. 428 - 445 (2014)
105.
Journal Article
Mettler, T.; Mühlhaus, T.; Hemme, D.; Schöttler, M. A.; Rupprecht, J.; Idoine, A.; Veyel, D.; Pal, S. K.; Yaneva-Roder, L.; Winck, F. V. et al.; Sommer, F.; Vosloh, D.; Seiwert, B.; Erban, A.; Burgos, A.; Arvidsson, S.; Schönfelder, S.; Arnold, A.; Günther, M.; Krause, U.; Lohse, M.; Kopka, J.; Nikoloski, Z.; Mueller-Roeber, B.; Willmitzer, L.; Bock, R.; Schroda, M.; Stitt, M.: Systems Analysis of the Response of Photosynthesis, Metabolism, and Growth to an Increase in Irradiance in the Photosynthetic Model Organism Chlamydomonas reinhardtii. The Plant Cell 26 (6), pp. 2310 - 2350 (2014)
106.
Journal Article
Recht, L.; Toepfer, N.; Batushansky, A.; Sikron, N.; Gibon, Y.; Fait, A.; Nikoloski, Z.; Boussiba, S.; Zarka, A.: Metabolite Profiling and Integrative Modeling Reveal Metabolic Constraints for Carbon Partitioning under Nitrogen Starvation in the Green Algae Haematococcus pluvialis. The Journal of Biological Chemistry 289 (44), pp. 30387 - 30403 (2014)
107.
Journal Article
Sajitz-Hermstein, M.; Nikoloski, Z.: Structural control of metabolic flux. PLoS Computational Biology 9 (12), e1003368 (2013)
108.
Journal Article
Toepfer, N.; Nikoloski, Z.: Large-scale modeling provides insights into Arabidopsis's acclimation to changing light and temperature conditions. Plant Signaling & Behavior 8 (9), e25480 (2013)
109.
Journal Article
Toepfer, N.; Caldana, C.; Grimbs, S.; Willmitzer, L.; Fernie, A. R.; Nikoloski, Z.: Integration of Genome-Scale Modeling and Transcript Profiling Reveals Metabolic Pathways Underlying Light and Temperature Acclimation in Arabidopsis. The Plant Cell 25 (4), pp. 1197 - 1211 (2013)
110.
Journal Article
Szecowka, M.; Heise, R.; Tohge, T.; Nunes-Nesi, A.; Vosloh, D.; Huege, J.; Feil, R.; Lunn, J.; Nikoloski, Z.; Stitt, M. et al.; Fernie, A. R.; Arrivault, S.: Metabolic Fluxes in an Illuminated Arabidopsis Rosette. The Plant Cell 25 (2), pp. 694 - 714 (2013)
111.
Journal Article
Basler, G.; Grimbs, S.; Nikoloski, Z.: Optimizing metabolic pathways by screening for feasible synthetic reactions. Biosystems 109 (2), pp. 186 - 191 (2012)
112.
Journal Article
Güell, O.; Sagués, F.; Basler, G.; Nikoloski, Z.; Serrano, M. S.: Assessing the significance of knockout cascades in metabolic networks. Journal of Computational Interdisciplinary Sciences 3 (1-2), pp. 45 - 53 (2012)
113.
Journal Article
Kleessen, S.; Antonio, C.; Sulpice, R.; Laitinen, R.; Fernie, A. R.; Stitt, M.; Nikoloski, Z.: Structured patterns in geographic variability of metabolic phenotypes in Arabidopsis thaliana. Nature Communications 3, p. 1319 (2012)
114.
Journal Article
Kleessen, S.; Araujo, W. L.; Fernie, A. R.; Nikoloski, Z.: Model-based Confirmation of Alternative Substrates of Mitochondrial Electron Transport Chain. Journal of Biological Chemistry 287 (14), pp. 11122 - 11131 (2012)
115.
Journal Article
Kleessen, S.; Fernie, A. R.; Nikoloski, Z.: A computational framework for evaluating the efficiency of Arabidopsis accessions in response to nitrogen stress reveals important metabolic mechanisms. Frontiers in Plant Science 3, p. 217 (2012)
116.
Journal Article
Kleessen, S.; Nikoloski, Z.: Dynamic regulatory on/off minimization for biological systems under internal temporal perturbations. BMC Systems Biology 6 (1), p. 16 (2012)
117.
Journal Article
Sajitz-Hermstein, M.; Nikoloski, Z.: Restricted cooperative games on metabolic networks reveal functionally important reactions. Journal of Theoretical Biology 314, pp. 192 - 203 (2012)
118.
Journal Article
Toepfer, N.; Jozefczuk, S.; Nikoloski, Z.: Integration of time-resolved transcriptomics data with flux-based methods reveals stress-induced metabolic adaptation in Escherichia coli. BMC Systems Biology 6 (1), p. 148 (2012)
119.
Journal Article
Basler, G.; Ebenhoeh, O.; Selbig, J.; Nikoloski, Z.: Mass-balanced randomization of metabolic networks. Bioinformatics 27 (10), pp. 1397 - 1403 (2011)
120.
Journal Article
Basler, G.; Grimbs, S.; Ebenhoeh, O.; Selbig, J.; Nikoloski, Z.: Evolutionary significance of metabolic network properties. Journal of the Royal Society Interface 9 (71), pp. 1168 - 1176 (2011)
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