Journal Article (138)
101.
Journal Article
96, pp. 171 - 194 (2014)
In search for an accurate model of the photosynthetic carbon metabolism. Mathematics and Computers in Simulation 102.
Journal Article
56 (9 - SI), pp. 941 - 959 (2014)
Analysis of metabolic alterations in Arabidopsis following changes in the carbon dioxide and oxygen partial pressures. Journal of Integrative Plant Biology 103.
Journal Article
9 (8), pp. 1803 - 1824 (2014)
Flux profiling of photosynthetic carbon metabolism in intact plants. Nature Protocols 104.
Journal Article
21 (6), pp. 428 - 445 (2014)
Biological Cluster Evaluation for Gene Function Prediction. Journal of Computational Biology 105.
Journal Article
26 (6), pp. 2310 - 2350 (2014)
Systems Analysis of the Response of Photosynthesis, Metabolism, and Growth to an Increase in Irradiance in the Photosynthetic Model Organism Chlamydomonas reinhardtii. The Plant Cell 106.
Journal Article
289 (44), pp. 30387 - 30403 (2014)
Metabolite Profiling and Integrative Modeling Reveal Metabolic Constraints for Carbon Partitioning under Nitrogen Starvation in the Green Algae Haematococcus pluvialis. The Journal of Biological Chemistry 107.
Journal Article
9 (12), e1003368 (2013)
Structural control of metabolic flux. PLoS Computational Biology 108.
Journal Article
8 (9), e25480 (2013)
Large-scale modeling provides insights into Arabidopsis's acclimation to changing light and temperature conditions. Plant Signaling & Behavior 109.
Journal Article
25 (4), pp. 1197 - 1211 (2013)
Integration of Genome-Scale Modeling and Transcript Profiling Reveals Metabolic Pathways Underlying Light and Temperature Acclimation in Arabidopsis. The Plant Cell 110.
Journal Article
25 (2), pp. 694 - 714 (2013)
Metabolic Fluxes in an Illuminated Arabidopsis Rosette. The Plant Cell 111.
Journal Article
109 (2), pp. 186 - 191 (2012)
Optimizing metabolic pathways by screening for feasible synthetic reactions. Biosystems 112.
Journal Article
3 (1-2), pp. 45 - 53 (2012)
Assessing the significance of knockout cascades in metabolic networks. Journal of Computational Interdisciplinary Sciences 113.
Journal Article
3, p. 1319 (2012)
Structured patterns in geographic variability of metabolic phenotypes in Arabidopsis thaliana. Nature Communications 114.
Journal Article
287 (14), pp. 11122 - 11131 (2012)
Model-based Confirmation of Alternative Substrates of Mitochondrial Electron Transport Chain. Journal of Biological Chemistry 115.
Journal Article
3, p. 217 (2012)
A computational framework for evaluating the efficiency of Arabidopsis accessions in response to nitrogen stress reveals important metabolic mechanisms. Frontiers in Plant Science 116.
Journal Article
6 (1), p. 16 (2012)
Dynamic regulatory on/off minimization for biological systems under internal temporal perturbations. BMC Systems Biology 117.
Journal Article
314, pp. 192 - 203 (2012)
Restricted cooperative games on metabolic networks reveal functionally important reactions. Journal of Theoretical Biology 118.
Journal Article
6 (1), p. 148 (2012)
Integration of time-resolved transcriptomics data with flux-based methods reveals stress-induced metabolic adaptation in Escherichia coli. BMC Systems Biology 119.
Journal Article
27 (10), pp. 1397 - 1403 (2011)
Mass-balanced randomization of metabolic networks. Bioinformatics 120.
Journal Article
9 (71), pp. 1168 - 1176 (2011)
Evolutionary significance of metabolic network properties. Journal of the Royal Society Interface