Publications of the Group
Journal Article (135)
1.
Journal Article
14 (1), 2687 (2023)
Widening the landscape of transcriptional regulation of green algal photoprotection. Nature Communications 2.
Journal Article
13 (1), 5712 (2023)
The unraveling of balanced complexes in metabolic networks. Scientific Reports 3.
Journal Article
14 (1), 986 (2023)
Cross-stress gene expression atlas of Marchantia polymorpha reveals the hierarchy and regulatory principles of abiotic stress responses. Nature Communications 4.
Journal Article
14, 1140829 (2023)
A simulation-free constrained regression approach for flux estimation in isotopically nonstationary metabolic flux analysis with applications in microalgae. Frontiers in Plant Science 5.
Journal Article
80, pp. 184 - 192 (2023)
Accurate prediction of in vivo protein abundances by coupling constraint-based modelling and machine learning. Metabolic Engineering 6.
Journal Article
Histone retention preserves epigenetic marks during heat stress-induced transcriptional memory in plants. The EMBO Journal, e113595 (2023)
7.
Journal Article
14 (1), 7052 (2023)
Growth in fluctuating light buffers plants against photorespiratory perturbations. Nature Communications 8.
Journal Article
19 (10), e1011549 (2023)
PARROT: Prediction of enzyme abundances using protein-constrained metabolic models. PLoS Computational Biology 9.
Journal Article
240 (1), pp. 426 - 438 (2023)
Predicting plasticity of rosette growth and metabolic fluxes in Arabidopsis thaliana. New Phytologist 10.
Journal Article
79, pp. 97 - 107 (2023)
Optogenetic control of Cdc48 for dynamic metabolic engineering in yeast. Metabolic Engineering 11.
Journal Article
19 (9), e1011489 (2023)
Maximizing multi-reaction dependencies provides more accurate and precise predictions of intracellular fluxes than the principle of parsimony. PLoS Computational Biology 12.
Journal Article
13, 14589 (2023)
The effective deficiency of biochemical networks. Scientific Reports 13.
Journal Article
14 (1), 4781 (2023)
Proteomics and constraint-based modelling reveal enzyme kinetic properties of Chlamydomonas reinhardtii on a genome scale. Nature Communications 14.
Journal Article
14 (1), 4897 (2023)
Identification of gene function based on models capturing natural variability of Arabidopsis thaliana lipid metabolism. Nature Communications 15.
Journal Article
3 (1), vbad098 (2023)
Prediction of metabolite-protein interactions based on integration of machine learning and constraint-based modeling. Bioinformatics advances 16.
Journal Article
19 (7), e1010832 (2023)
Gene regulatory network inference using mixed-norms regularized multivariate model with covariance selection. PLoS Computational Biology 17.
Journal Article
191 (4), pp. 2150 - 2166 (2023)
Toward mechanistic modeling and rational engineering of plant respiration. Plant Physiology 18.
Journal Article
5 (1), lqad008 (2023)
Self- and cross-attention accurately predicts metabolite–protein interactions. NAR: genomics and bioinformatics 19.
Journal Article
14, 1485 (2023)
Data integration across conditions improves turnover number estimates and metabolic predictions. Nature Communications 20.
Journal Article
14, 1977 (2023)
Light-independent regulation of algal photoprotection by CO2 availability. Nature Communications