Publications of the Group
Journal Article (146)
1.
Journal Article
Metabolic modeling identifies determinants of thermal growth responses in Arabidopsis thaliana. New Phytologist (2025)
2.
Journal Article
A data-integrative modeling approach accurately characterizes the effects of mutations on Arabidopsis lipid metabolism. Plant Physiology (2024)
3.
Journal Article
20 (11), e1012576 (2024)
Harnessing the optimization of enzyme catalytic rates in engineering of metabolic phenotypes. PLOS Computational Biology 4.
Journal Article
6 (3), lqae114 (2024)
Machine learning of metabolite-protein interactions from model-derived metabolic phenotypes. NAR: genomics and bioinformatics 5.
Journal Article
944, 173961 (2024)
Comprehensive profiles of sulfur cycling microbial communities along a mangrove sediment depth. Science of the Total Environment 6.
Journal Article
47 (12), pp. 5158 - 5171 (2024)
Nonlinear models based on leaf architecture traits explain the variability of mesophyll conductance across plant species. Plant, Cell and Environment 7.
Journal Article
36 (9), pp. 3809 - 3823 (2024)
Transcriptomic response to nitrogen availability reveals signatures of adaptive plasticity during tetraploid wheat domestication. Plant Cell 8.
Journal Article
10 (1), 54 (2024)
Comparative analysis of metabolic models of microbial communities reconstructed from automated tools and consensus approaches. npj Systems biology and applications 9.
Journal Article
33 (10), e16780 (2024)
Strategies to identify and dissect trade-offs in plants. Molecular Ecology 10.
Journal Article
81 (1), 117 (2024)
The genome of Haberlea rhodopensis provides insights into the mechanisms for tolerance to multiple extreme environments. Cellular and Molecular Life Sciences 11.
Journal Article
82, pp. 216 - 224 (2024)
Prediction and integration of metabolite-protein interactions with genome-scale metabolic models. Metabolic Engineering 12.
Journal Article
158, 111515 (2024)
Successive responses of three coral holobiont components (coral hosts, symbiotic algae, and bacteria) to daily temperature fluctuations. Ecological Indicators 13.
Journal Article
14 (1), 2687 (2023)
Widening the landscape of transcriptional regulation of green algal photoprotection. Nature Communications 14.
Journal Article
13 (1), 5712 (2023)
The unraveling of balanced complexes in metabolic networks. Scientific Reports 15.
Journal Article
14 (1), 986 (2023)
Cross-stress gene expression atlas of Marchantia polymorpha reveals the hierarchy and regulatory principles of abiotic stress responses. Nature Communications 16.
Journal Article
14, 1140829 (2023)
A simulation-free constrained regression approach for flux estimation in isotopically nonstationary metabolic flux analysis with applications in microalgae. Frontiers in Plant Science 17.
Journal Article
80, pp. 184 - 192 (2023)
Accurate prediction of in vivo protein abundances by coupling constraint-based modelling and machine learning. Metabolic Engineering 18.
Journal Article
42, e113595 (2023)
Histone retention preserves epigenetic marks during heat stress-induced transcriptional memory in plants. The EMBO Journal 19.
Journal Article
14 (1), 7052 (2023)
Growth in fluctuating light buffers plants against photorespiratory perturbations. Nature Communications 20.
Journal Article
19 (10), e1011549 (2023)
PARROT: Prediction of enzyme abundances using protein-constrained metabolic models. PLoS Computational Biology