Publications of the Group
Journal Article (154)
1.
Journal Article
247 (1), pp. 178 - 190 (2025)
Metabolic modeling identifies determinants of thermal growth responses in Arabidopsis thaliana. New Phytologist 2.
Journal Article
11 (22), eads7269 (2025)
Kinetic modules are sources of concentration robustness in biochemical networks. Science Advances 3.
Journal Article
26 (3), bbaf211 (2025)
Advances in multi-trait genomic prediction approaches: classification, comparative analysis, and perspectives. Briefings in Bioinformatics 4.
Journal Article
11, pp. 1018 - 1027 (2025)
Predicting plant trait dynamics from genetic markers. Nature Plants 5.
Journal Article
88 (1), 31 (2025)
Microbial Community Shifts and Nitrogen Utilization in Peritidal Microbialites: The Role of Salinity and pH in Microbially Induced Carbonate Precipitation. Microbial Ecology 6.
Journal Article
21 (4), e1012972 (2025)
Flux-sum coupling analysis of metabolic network models. PLOS Computational Biology 7.
Journal Article
28 (3), 112126 (2025)
Protein-constrained models pinpoints the role of underground metabolism in robustness of metabolic phenotypes. iScience 8.
Journal Article
16, 2545 (2025)
Phototropin connects blue light perception to starch metabolism in green algae. Nature Communications 9.
Journal Article
197 (2), kiae615 (2025)
A data-integrative modeling approach accurately characterizes the effects of mutations on Arabidopsis lipid metabolism. Plant Physiology 10.
Journal Article
19 (1), wraf109 (2025)
Integration of metatranscriptomics data improves the predictive capacity of microbial community metabolic models. The ISME Journal 11.
Journal Article
20 (11), e1012576 (2024)
Harnessing the optimization of enzyme catalytic rates in engineering of metabolic phenotypes. PLOS Computational Biology 12.
Journal Article
6 (3), lqae114 (2024)
Machine learning of metabolite-protein interactions from model-derived metabolic phenotypes. NAR: genomics and bioinformatics 13.
Journal Article
944, 173961 (2024)
Comprehensive profiles of sulfur cycling microbial communities along a mangrove sediment depth. Science of the Total Environment 14.
Journal Article
47 (12), pp. 5158 - 5171 (2024)
Nonlinear models based on leaf architecture traits explain the variability of mesophyll conductance across plant species. Plant, Cell and Environment 15.
Journal Article
36 (9), pp. 3809 - 3823 (2024)
Transcriptomic response to nitrogen availability reveals signatures of adaptive plasticity during tetraploid wheat domestication. Plant Cell 16.
Journal Article
10 (1), 54 (2024)
Comparative analysis of metabolic models of microbial communities reconstructed from automated tools and consensus approaches. npj Systems biology and applications 17.
Journal Article
33 (10), e16780 (2024)
Strategies to identify and dissect trade-offs in plants. Molecular Ecology 18.
Journal Article
81 (1), 117 (2024)
The genome of Haberlea rhodopensis provides insights into the mechanisms for tolerance to multiple extreme environments. Cellular and Molecular Life Sciences 19.
Journal Article
82, pp. 216 - 224 (2024)
Prediction and integration of metabolite-protein interactions with genome-scale metabolic models. Metabolic Engineering 20.
Journal Article
158, 111515 (2024)
Successive responses of three coral holobiont components (coral hosts, symbiotic algae, and bacteria) to daily temperature fluctuations. Ecological Indicators