Publications of Zoran Nikoloski

Razaghi-Moghadam, Z.; Soleymani Babadi, F.; Nikoloski, Z.: Harnessing the optimization of enzyme catalytic rates in engineering of metabolic phenotypes. PLOS Computational Biology 20 (11), e1012576 (2024)

Habibpour , M.; Razaghi-Moghadam, Z.; Nikoloski, Z.: Machine learning of metabolite-protein interactions from model-derived metabolic phenotypes. NAR: genomics and bioinformatics 6 (3), lqae114 (2024)

Qian, L.; Yan, B.; Zhou, J.; Fan, Y.; Tao, M.; Zhu, W.; Wang, C.; Tu, Q.; Tian, Y.; He, Q. et al.; Wu, K.; Niu, M.; Yan, Q.; Nikoloski, Z.; Liu, G.; Yu, X.; He, Z.: Comprehensive profiles of sulfur cycling microbial communities along a mangrove sediment depth. Science of the Total Environment 944, 173961 (2024)

Rahimi-Majd, M.; Leverett, A.; Neumann, A.; Kromdijk, J.; Nikoloski, Z.: Nonlinear models based on leaf architecture traits explain the variability of mesophyll conductance across plant species. Plant, Cell and Environment 47 (12), pp. 5158 - 5171 (2024)

Pieri, A.; Beleggia, R.; Gioia, T.; Tong, H.; Di Vittori, V.; Frascarelli, G.; Bitocchi, E.; Nanni, L.; Bellucci, E.; Fiorani, F. et al.; Pecchioni, N.; Marzario, S.; De Quattro, C.; Limongi, A.; De Vita, P.; Rossato, M.; Schurr, U.; David, J.; Nikoloski, Z.; Papa, R.: Transcriptomic response to nitrogen availability reveals signatures of adaptive plasticity during tetraploid wheat domestication. Plant Cell 36 (9), pp. 3809 - 3823 (2024)

Hsieh, Y. E.; Tandon, K.; Verbruggen, H.; Nikoloski, Z.: Comparative analysis of metabolic models of microbial communities reconstructed from automated tools and consensus approaches. npj Systems biology and applications 10 (1), 54 (2024)

Laitinen, R. A. E.; Nikoloski, Z.: Strategies to identify and dissect trade-offs in plants. Molecular Ecology 33 (10), e16780 (2024)

Gupta, S.; Petrov, V.; Garg, V.; Mueller-Roeber, B.; Fernie, A. R.; Nikoloski, Z.; Gechev, T.: The genome of Haberlea rhodopensis provides insights into the mechanisms for tolerance to multiple extreme environments. Cellular and Molecular Life Sciences 81 (1), 117 (2024)

Habibpour, M.; Razaghi-Moghadam, Z.; Nikoloski, Z.: Prediction and integration of metabolite-protein interactions with genome-scale metabolic models. Metabolic Engineering 82, pp. 216 - 224 (2024)

Ferreira, M.A.D.M.; Silveira, W.B.D.; Nikoloski, Z.: Protein constraints in genome-scale metabolic models: Data integration, parameter estimation, and prediction of metabolic phenotypes. Biotechnology and Bioengineering 121 (3), pp. 915 - 930 (2024)