Publications of Zoran Nikoloski
Journal Article (153)
1.
Journal Article
L2,1-norm regularized multivariate regression model with applications to genomic prediction. Bioinformatics (2021)
2.
Journal Article
12 (1), 458 (2021)
A network-based framework for shape analysis enables accurate characterization of leaf epidermal cells. Nature Communications 3.
Journal Article
10, 1240 (2021)
PC2P: parameter-free network-based prediction of protein complexes. Bioinformatics 4.
Journal Article
11 (1), 4787 (2021)
Integration of relative metabolomics and transcriptomics time-course data in a metabolic model pinpoints effects of ribosome biogenesis defects on Arabidopsis thaliana metabolism. Scientific Reports 5.
Journal Article
257, 153354 (2021)
Machine learning approaches for crop improvement: Leveraging phenotypic and genotypic big data. Journal of Plant Physiology 6.
Journal Article
GeneReg: A constraint-based approach for design of feasible metabolic engineering strategies at the gene level. Bioinformatics (2020)
7.
Journal Article
36 (9), pp. 2950 - 2951 (2020)
CytoSeg 2.0: automated extraction of actin filaments. Bioinformatics 8.
Journal Article
43 (6), pp. 1376 - 1393 (2020)
Low temperature tolerance of the Antarctic species Deschampsia antarctica: a complex metabolic response associated with nutrient remobilization. Plant, Cell and Environment 9.
Journal Article
Model-assisted identification of metabolic engineering strategies for Jatropha curcas lipid pathways. The Plant Journal (accepted)
10.
Journal Article
80, 101051 (2020)
Towards model-driven characterization and manipulation of plant lipid metabolism. Progress in Lipid Research 11.
Journal Article
103 (6), pp. 2168 - 2177 (2020)
Characterization of maximal enzyme catalytic rates in central metabolism of Arabidopsis thaliana. The Plant Journal 12.
Journal Article
21 (23), pp. 1 - 27 (2020)
Comparative analysis of ros network genes in extremophile eukaryotes. International Journal of Molecular Sciences 13.
Journal Article
5 (2), e20106 (2020)
Supervised Learning of Gene Regulatory Networks. Current Protocols in Plant Biology 14.
Journal Article
16 (4), e1007832 (2020)
Flux-based hierarchical organization of Escherichia coli’s metabolic network. PLoS Computational Biology 15.
Journal Article
11 (1), 2410 (2020)
Integrating molecular markers into metabolic models improves genomic selection for Arabidopsis growth. Nature Communications 16.
Journal Article
266, pp. 283 - 290 (2019)
Coherent network partitions. Discrete applied mathematics 17.
Journal Article
225 (2), pp. 754 - 768 (2019)
Cytochrome respiration pathway and sulphur metabolism sustain stress tolerance to low temperature in the Antarctic species Colobanthus quitensis. New Phytologist 18.
Journal Article
10, 737 (2019)
Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida. Nature Communications 19.
Journal Article
179 (3), pp. 894 - 906 (2019)
Computational Approaches to Design and Test Plant Synthetic Metabolic Pathways. Plant Physiology 20.
Journal Article
15 (1), e1006687 (2019)
Cellular determinants of metabolite concentration ranges. PLoS Computational Biology