Ricci-Silva, M.; Vaz, B.; Vasconcelos, G.; Romão, W.; Aricetti, J.; Caldana, C.; Abdelnur, P.: Mass Spectrometry for Metabolomics and Biomass Composition Analyses. In: Analytical Techniques and Methods for Biomass, S. 115 - 141. Springer International Publishing Switzerland, Cham (2016)

Saplaoura, E.; Kragler, F.: Mobile Transcripts and Intercellular Communication in Plants. In: Developmental Signaling in Plants, Bd. 40, S. 1 - 29 (Hg. Lin, C.; Luan, S.). Academic Press, Amsterdam (2016)

Strand, D.; Fisher, N.; Kramer, D. M.: Distinct Energetics and Regulatory Functions of the Two Major Cyclic Electron Flow Pathways in Chloroplasts. In: Chloroplasts: Current Research and Future Trends, S. 89 - 100. CAISTER ACADEMIC PRESS, HEWITTS LANE (2016)

Lambers, H.; Clode, P. L.; Hawkins, H.-J.; Laliberté, E.; Oliveira, R. S.; Reddell, P.; Shane, M. W.; Stitt, M.; Weston, P.: Metabolic adaptations of the non-mycotrophic Proteaceae to soil with a low phosphorus availability. In: Annual Plant Reviews, Bd. 48, S. 289 - 335. Wiley, Hoboken, NJ (2015)

Watanabe, M.; Hubberten, H. M.; Saito, K.; Hoefgen, R.: Serine Acetyltransferase. In: Amino Acids in higher plants, S. 195 - 218. CABI, Oxfordshire (2015)

Kleessen, S.; Nikoloski, Z.: Computational Approaches to Dissect and Understand Mechanisms of Adaptation. In: Molecular Mechanisms in Plant Adaptation, S. 193 - 215. Wiley-Blackwell, Malden (2015)

Koehl, K. I.; Laitinen, R.: From the Greenhouse to the Real World - Arabidopsis Field Trials and Applications. In: Molecular Mechanisms in Plant Adaptation, S. 217 - 235. Wiley-Blackwell, Malden (2015)

Sampathkumar, A.; Wightman, R.: Live Cell Imaging of the Cytoskeleton and Cell Wall Enzymes in Plant Cells. In: PLANT CELL EXPANSION: METHODS AND PROTOCOLS, S. 133 - 141. Humana Press, Totowa, NJ (2015)

Smith, L. M.; Laitinen, R.: Use of Natural Variation in Arabidopsis thaliana to Study Adaptation. In: Molecular Mechanisms in Plant Adaptation, S. 31 - 59. Wiley-Blackwell, Malden (2015)

Szymanski, J.; Galili, G.: Linking Plant Amino Acids with Energy and Stress A Systems Biology Perspective. In: Omics Technologies and Crop Improvement, S. 343 - 358. CRC Press-Taylor & Francis Group, Boca-Raton (2015)

Vallarino, J. G.; Osorio, S.: Technological Advances in Studies of Plant Adaptation. In: Molecular Mechanisms in Plant Adaptation, S. 1 - 30. Wiley-Blackwell, Malden (2015)

Angeleska, A.; Kleessen, S.; Nikoloski, Z.: The Sequence Reconstruction Problem. In: Discrete and Topological Models in Molecular Biology, S. 23 - 43 (Hg. Jonoska , N.; Saito, M.). Springer-Verlag, Berlin, Heidelberg (2014)

Ast, C.; Draaijer, A.: Methods and Techniques to Measure Molecular Oxygen in Plants. In: Low-Oxygen stress in plants: Oxygen sensing and adaptive responses to Hypoxia, S. 397 - 417 (2014)

Bock, R.: Engineering Chloroplasts for High-Level Foreign Protein Expression. In: Chloroplast Biotechnology: Methods and Protocols, S. 93 - 106. Humana Press, Totowa, NJ (2014)

Dethloff, F.; Erban, A.; Orf, I.; Alpers, J.; Fehrle, I.; Beine-Golovchuk, O.; Schmidt, S.; Schwachtje, J.; Kopka, J.: Profiling Methods to Identify Cold-Regulated Primary Metabolites Using Gas Chromatography Coupled to Mass Spectrometry. In: Plant Cold Acclimation: Methods and Protocols, S. 171 - 197. HUMANA PRESS INC, 999 RIVERVIEW DR, STE 208, TOTOWA, NJ 07512-1165 USA, 999 RIVERVIEW DR, STE 208, TOTOWA, NJ 07512-1165 USA (2014)

Hincha, D. K.; Zuther, E.: Introduction: plant cold acclimation and freezing tolerance. In: Methods in Molecular Biology, Bd. 1166, S. 1 - 6. Humana Press, Clifton, N.J. (2014)

Huege, J.; Goetze, J.; Dethloff, F.; Junker, B.; Kopka, J.: Quantification of Stable Isotope Label in Metabolites via Mass Spectrometry. In: Plant Chemical Genomics: Methods and Protocols, S. 213 - 223. HUMANA PRESS INC, 999 RIVERVIEW DR, STE 208, TOTOWA, NJ 07512-1165 USA (2014)

Kosmacz, M.; Weits, D. A.: Oxygen Perception in Plants. In: Low-Oxygen Stress in Plants: Oxygen Sensing and Adaptive Responses to Hypoxia, Bd. 21, S. 3 - 17. SPRINGER-VERLAG BERLIN, HEIDELBERGER PLATZ 3, D-14197 BERLIN, GERMANY, HEIDELBERGER PLATZ 3, D-14197 BERLIN, GERMANY (2014)

Krause, K.; Scharff, L. B.: Reduced Genomes from Parasitic Plant Plastids: Templates for Minimal Plastomes? In: Progress in Botany, S. 97 - 115. Springer, Berlin (2014)

Krueger, S.; Steinhauser, D.; Lisec, J.; Giavalisco, P.: Analysis of Subcellular Metabolite Distributions Within Arabidopsis thaliana Leaf Tissue: A Primer for Subcellular Metabolomics. In: Arabidopsis Protocols, 3rd Edition, S. 575 - 596. Humana Press, Totowa, NJ (2014)

Matthes, A.; Koehl, K. I.; Schulze, W. X.: SILAC and Alternatives in Studying Cellular Proteomes of Plants. In: Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC): Methods and Protocols, S. 65 - 83. Humana Press, Totowa, NJ (2014)

Päpke, C.; Ramirez-Aguilar, S. J.; Antonio, C.: Oxygen Consumption Under Hypoxic Conditions. In: Low-Oxygen Stress in Plants: Oxygen Sensing and Adaptive Responses to Hypoxia, S. 185 - 208. SPRINGER-VERLAG BERLIN, HEIDELBERGER PLATZ 3, D-14197 BERLIN, GERMANY, HEIDELBERGER PLATZ 3, D-14197 BERLIN, GERMANY (2014)

Sanchez-Rodriguez, C.; Persson, S.: Regulation of Cell Wall Formation by Membrane Traffic. In: Plant Cell Wall Patterning and Cell Shape, S. 35 - 64. Wiley, Hoboken, NJ (2014)

Sommer, F.; Mühlhaus, T.; Hemme, D.; Veyel, D.; Schroda, M.: Identification and Validation of Protein-Protein Interactions by Combining Co-immunoprecipitation, Antigen Competition, and Stable Isotope Labeling. In: STABLE ISOTOPE LABELING BY AMINO ACIDS IN CELL CULTURE (SILAC): METHODS AND PROTOCOLS, S. 245 - 261. Humana Press, Totowa, NJ (2014)

Thalhammer, A.; Hincha, D. K.; Zuther, E.: Measuring freezing tolerance: electrolyte leakage and chlorophyll fluorescence assays. In: Methods in Molecular Biology, Bd. 1166, S. 15 - 24. Humana Press, Clifton, N.J. (2014)

Weinhofer, I.; Köhler, C.: Endosperm-Specific Chromatin Profiling by Fluorescence-Activated Nuclei Sorting and Chip-on-Chip. In: Plant Epigenetics and Epigenomics: Methods and Protocolls, Bd. 1112, S. 105 - 115 (Hg. Spillane, C.; McKeown, P. C.) (2014)

Bock, R.: Engineering plastid transgenes for high level protein expression. In: Chloroplast Biotechnology: Methods and Protocols, S. In press (2013)

Brotman, Y.: The use of metabolomic approaches to study Trichoderma-plant interactions. In: Trichoderma: biology and applications., S. 209 - 221. CABI, Wallingford (2013)

Groth, D.; Hartmann, S.; Klie, S.; Selbig, J.: Principal components analysis. In: Methods in Molecular Biology, Bd. 930, S. 527 - 547 (2013)

Thalhammer, A.; Hincha, D. K.: The Function and Evolution of Closely Related COR/LEA (Cold-Regulated/Late Embryogenesis Abundant) Proteins in Arabidopsis thaliana. In: Plant and Microbe Adaptations to Cold in a Changing World, S. 89 - 105 (Hg. Imai, R.). Springer, New York (2013)

Walther, D.: The combinatorics of cis-regulatory elements: from cooperatively acting motifs to gene regulatory networks. In: The analysis of cis-elements: Current developments, knowledge and applications to gene networking, S. 176 - 188 (Hg. Berendzen, K.; Wanke, D.). Bentham Books, AG Bussum (2013)

Graf, A.: Nighttime starch degradation, the circadian clock, and plant growth. In: McGraw-Hill Yearbook of Science & Technology 2012, S. 273 - 275 (2012)

Greiner, S.: Plastome mutants of higher plants. In: Genomics of Chloroplasts and Mitochondria (Advances in Photosynthesis and Respiration), Bd. 35, S. 237 - 266 (Hg. Bock, R.; Knoop, V.). Springer-Verlag, Dordrecht, Heidelberg, New York, London (2012)

Harrington, M. J.; Mutwil, M.; Barriere, Y.; Sibout, R.: Molecular Biology of Lignification in Grasses. In: Lignins: Biosynthesis, Biodegradation and Bioengineering, Bd. 61, S. 77 - 112 (2012)

Hincha, D. K.; Espinoza, C.; Zuther, E.: Transcriptomic and metabolomic approaches to the analysis of plant freezing tolerance and cold acclimation. In: Improving Crop Resistance to Abiotic Stress, Bd. 1 & 2, S. 255 - 287 (Hg. Tuteja, N.; Gill, S. S.; Tiburcio, A. F.; Tuteja, R.). Wiley-Blackwell, Berlin (2012)

Huege, J.; Goetze, J.; Dethloff, F.; Junker, B.; Kopka, J.: Quantification of stable isotope label in metabolites via mass spectrometry. In: Methods in Molecular Biology, Bd. 1056, S. 213 - 223. Humana Press Inc., Totowa, NJ, USA (2012)

Hummel, J.; Strehmel, N.; Boelling, C.; Schmidt, S.; Walther, D.; Kopka, J.: Mass spectral search and analysis using the Golm Metabolome Database. In: The Handbook of Plant Metabolomics, S. 321 - 343 (Hg. Weckwerth, W.) (2012)

Ivakov, A.; Persson, S.: Plant Cell Walls. In: Encyclopedia of Life Sciences (ELS) (2012)

Lüdemann, A.; von Malotky, L.; Erban, A.; Kopka, J.: TagFinder: Preprocessing software for the fingerprinting and the profiling of gas chromatography-mass spectrometry based metabolome analyses. In: Methods in Molecular Biology, Bd. 860, S. 255 - 286 (Hg. Hardy, N. W.; Hall, R. D.). Springer, Berlin (2012)

Luedemann, A.; von Malotky, L.; Erban, A.; Kopka, J.: TagFinder-preprocessing software for the fingerprinting and the profiling of gas chromatography-mass spectrometry (GC-MS) based metabolome analyses. In: Plant Metabolomics: Methods and Protocols, 2012/02/29 Aufl., S. 255 - 286 (Hg. Hardy, N. W.; Hall, R. D.). Humana Press Inc., Totowa, NJ, USA (2012)

MacRae, E. A.; Lunn, J. E.: Photosynthetic sucrose biosynthesis: An evolutionary perspective. In: Photosynthesis: Plastid Biology, Energy Conversion and Carbon Assimilation, 27, S. 675 - 702 (Hg. Eaton-Rye, J. J.; Tripathy, B. C.; Sharkey, T. D.). Springer-Verlag, Berlin, GER (2012)

Neupert, J.; Lu, Y.; Shao, N.; Bock, R.: Nuclear transformation in the model alga Chlamydomonas reinhardtii. In: Transgenic Plants: Methods and Protocols., 4, 2012/02/29 Aufl., S. 35 - 47 (Hg. Dunwell, J. M.; Wetten, A. C.) (2012)

Osorio, S.; Do, P. T.; Fernie, A. R.: Profiling Primary Metabolites of Tomato Fruit with Gas Chromatography/Mass Spectrometry. In: Plant Metabolomics: Methods and Protocols, 2012/02/29 Aufl., S. 101 - 110 (Hg. Hardy, N. W.; Hall, R. D.). Humana Press Inc., Totowa, NJ, USA (2012)

Osorio, S.; Fernie, A. R.: Plant Systems Biology. In: Systems Biology (Hg. Meyers, R. A.). Wiley-Blackwell (2012)

Ruiz-Medrano, R.; Kragler, F.; Wolf, S.: Signaling and Phloem-Mobile Transcripts. In: Short and Long Distance Signaling, 7, S. 151 - 177 (Hg. Kragler, F.,. H. M.). Springer-Verlag, New York, Dordrecht, Heidelberg, London (2012)

Schudoma, C.; Steinfath, M.; Sprenger, H.; van Dongen, J.; Hincha, D. K.; Zuther, E.; Geigenberger, P.; Kopka, J.; Koehl, K. I.; Walther, D.: Conducting molecular biomarker discovery studies in plants. In: High Throughput Phenotyping in Plants, 10 (Hg. Normanly, J.). Humana Press Inc., Totowa, NJ, USA (2012)

Skirycz, A.; Hannah, M. A.: 13 - The Use of “Omics” Approaches in Arabidopsis for the Improvement of Abiotic Stress Tolerance. In: Improving Crop Resistance to Abiotic Stress, S. 301 - 320. Wiley-Blackwell, Weinheim (2012)

Stitt, M.: Plant Growth – Basic Principles and Issues Relating to the Optimization of Biomass Production and Composition as a Feedstock for Energy. In: Heterogeneous Catalysis for the Conversion of Biomass and Its Derivatives.Max Planck Research Library for the History and Development of Knowledge, Proceedings 2, Bd. 2, 4 (Hg. Behrens, M.; Abhaya, D.). Edition Open Access, Berlin (2012)

Watanabe, M.; Hubberten, H. M.; Hoefgen, R.: Plant Response to Mineral Ion Availability: Transcriptome Responses to Sulfate, Selenium and Iron. In: Sulfur Metabolism in Plants, Proceedings of the International Sulfur Workshop 1, S. 123 - 134 (Hg. De Kok, L.J.) (2012)

Yazdanbakhsh, N.; Fisahn, J.: High-throughput phenotyping of root growth dynamics. In: Methods in Molecular Biology, Bd. 918, 3, S. 21 - 40 (2012)