Alle Publikationen

301.

Zeitschriftenartikel

Moura Ferreira, M.A.D.; Wendering, P.; Arend, M.; Batista da Silveira, W.; Nikoloski, Z.: Accurate prediction of in vivo protein abundances by coupling constraint-based modelling and machine learning. Metabolic Engineering 80, S. 184 - 192 (2023)

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302.

Zeitschriftenartikel

Pratx, L.; Wendering, P.; Kappel, C.; Nikoloski, Z.; Bäurle, I.: Histone retention preserves epigenetic marks during heat stress-induced transcriptional memory in plants. The EMBO Journal 42, e113595 (2023)

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303.

Zeitschriftenartikel

Shen, S.; Wang, S.; Yang, C.; Wang, C.; Zhou, Q.; Zhou, S.; Zhang, R.; Li, Y.; Wang, Z.; Dai, L. et al.; Peng, W.; Hao, Y.; Guo, H.; Cao, G.; Liu, X.; Yao, F.; Xu, Q.; Fernie, A. R.; Luo, J.: Elucidation of the melitidin biosynthesis pathway in pummelo. Journal of Integrative Plant Biology 65 (11), S. 2505 - 2518 (2023)

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304.

Zeitschriftenartikel

Su, C.; Kokosza, A.; Xie, X.; Pěnčík, A.; Zhang, Y.; Raumonen, P.; Shi, X.; Muranen, S.; Topcu, M. K.; Immanen, J. et al.; Hagqvist, R.; Safronov, O.; Alonso-Serra, J.; Eswaran, G.; Venegas, M. P.; Ljung, K.; Ward, S.; Mähönen, A. P.; Himanen, K.; Salojärvi, J.; Fernie, A. R.; Novák, O.; Leyser, O.; Pałubicki, W.; Helariutta, Y.; Nieminen, K.: Tree architecture: A strigolactone-deficient mutant reveals a connection between branching order and auxin gradient along the tree stem. Proceedings of the National Academy of Sciences of the United States of America 120 (48), e2308587120 (2023)

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305.

Zeitschriftenartikel

Székely, A.; Gulyás, Z.; Balogh, E.; Payet, R.; Dalmay, T.; Kocsy, G.; Kalapos, B.: Identification of ascorbate- and salicylate-responsive miRNAs and verification of the spectral control of miR395 in Arabidopsis. Physiologia Plantarum 175 (6), e14070 (2023)

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306.

Zeitschriftenartikel

von Bismarck, T.; Wendering, P.; de Souza, L. P.; Ruß, J.; Strandberg, L.; Heyneke, E.; Walker, B. J.; Schöttler, M. A.; Fernie, A. R.; Nikoloski, Z. et al.; Armbruster, U.: Growth in fluctuating light buffers plants against photorespiratory perturbations. Nature Communications 14 (1), 7052 (2023)

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307.

Zeitschriftenartikel

Zemach, I.; Alseekh, S.; Tadmor-Levi, R.; Fisher, J.; Torgeman, S.; Trigerman, S.; Nauen, J.; Hayut, S. F.; Mann, V.; Rochsar, E. et al.; Finkers, R.; Wendenburg, R.; Osorio, S.; Bergmann, S.; Lunn, J. E.; Semel, Y.; Hirschberg, J.; Fernie, A. R.; Zamir, D.: Multi-year field trials provide a massive repository of trait data on a highly diverse population of tomato and uncover novel determinants of tomato productivity. The Plant Journal 116 (4), S. 1136 - 1151 (2023)

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308.

Zeitschriftenartikel

Zhang, Y.; Martinez-Jaime, S.; Bulut, M.; Graf, A.; Fernie, A. R.: The conditional mitochondrial protein complexome in Arabidopsis thaliana root and shoot. Plant Communications 4 (5), 100635 (2023)

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309.

Zeitschriftenartikel

Buelbuel, S.; Sakuraba, Y.; Sedaghatmehr, M.; Watanabe, M.; Hoefgen, R.; Balazadeh, S.; Mueller-Roeber, B.: Arabidopsis BBX14 negatively regulates nitrogen starvation- and dark-induced leaf senescence. The Plant Journal 116 (1), S. 251 - 268 (2023)

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310.

Zeitschriftenartikel

Chung, K. P.; Loiacono, F.V.; Neupert, J.; Wu, M.; Bock, R.: An RNA thermometer in the chloroplast genome of Chlamydomonas facilitates temperature-controlled gene expression. Nucleic Acids Research 51 (20), S. 11386 - 11400 (2023)

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311.

Zeitschriftenartikel

Fernie, A. R.; Zhang, Y.: Observations and implication of thermal tolerance in the Arabidopsis proteome. Cell Systems 14 (10), S. 819 - 821 (2023)

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312.

Zeitschriftenartikel

Ferreira, M. A. d. M.; Silveira, W. B. d.; Nikoloski, Z.: PARROT: Prediction of enzyme abundances using protein-constrained metabolic models. PLoS Computational Biology 19 (10), e1011549 (2023)

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313.

Zeitschriftenartikel

Forner, J.; Kleinschmidt, D.; Meyer, E. H.; Gremmels, J.; Morbitzer, R.; Lahaye, T.; Schöttler, M. A.; Bock, R.: Targeted knockout of a conserved plant mitochondrial gene by genome editing. Nature Plants 9, S. 1818 - 1831 (2023)

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314.

Zeitschriftenartikel

Heinze, J.; Werger, L.; Ogden, M.; Heinken, T.; Hoefgen, R.; Weber, E.: Short wind pulses consistently change the morphology of roots, but not of shoots, across young plants of different growth forms. Stress-the International Journal on the Biology of Stress 3, 43 (2023)

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315.

Zeitschriftenartikel

Incarbone, M.; Bradamante, G.; Pruckner, F.; Wegscheider, T.; Rozhon, W.; Nguyen, V.; Gutzat, R.; Mérai, Z.; Lendl, T.; MacFarlane, S. et al.; Nodine, M.; Scheid, O. M.: Salicylic acid and RNA interference mediate antiviral immunity of plant stem cells. Proceedings of the National Academy of Sciences of the United States of America 120 (42), e2302069120 (2023)

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316.

Zeitschriftenartikel

Lamm, C. E.; Rabbi, I. Y.; Medeiros, D.B.; Rosado-Souza, L.; Pommerrenig, B.; Dahmani, I.; Rüscher, D.; Hofmann, J.; van Doorn; M., A. et al.; Schlereth, A.; Neuhaus, H. E.; Fernie, A. R.; Sonnewald, U.; Zierer, W.: Efficient sugar utilization and transition from oxidative to substrate-level phosphorylation in high starch storage roots of African cassava genotypes. The Plant Journal 116 (1), S. 38 - 57 (2023)

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317.

Zeitschriftenartikel

Nicolas, P.; Pattison, R. J.; Zheng, Y.; Lapidot-Cohen, T.; Brotman, Y.; Osorio, S.; Fernie, A. R.; Fei, Z.; Catalá, C.: Starch deficiency in tomato causes transcriptional reprogramming that modulates fruit development, metabolism, and stress responses. Journal of Experimental Botany 74 (20), S. 6331 - 6348 (2023)

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318.

Zeitschriftenartikel

Pereira-Lima, Í.A.; Batista-Silva, W.; Siqueira, J.A.; Silva, M.F.; Medeiros, D.B.; Cavalcanti, J.H.; Gonçalves, J.F.D.C.; Ribeiro, D.M.; Fernie, A. R.; Nunes-Nesi, A. et al.; Araújo, W.L.: Differential Aluminum tolerance in Arabidopsis thaliana ecotypes is seemingly related to metabolite changes. Environmental and Experimental Botany 214, 105472 (2023)

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319.

Zeitschriftenartikel

Sarmiento-Mañús, R.; Fontcuberta-Cervera, S.; González-Bayón, R.; Hannah, M. A.; Álvarez-Martínez, F. J.; Barrajón-Catalán, E.; Micol, V.; Quesada, V.; Ponce, M. R.; Micol, J. L.: Analysis of the Arabidopsis venosa4-0 Mutant Supports the Role of VENOSA4 in dNTP Metabolism. Plant Science 335, 111819 (2023)

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320.

Zeitschriftenartikel

Segarra-Medina, C.; Alseekh, S.; Fernie, A. R.; Rambla, J. L.; Pérez-Clemente, R. M.; Gómez-Cádenas, A.; Zandalinas, S. I.: Abscisic acid promotes plant acclimation to the combination of salinity and high light stress. Plant Physiology and Biochemistry 203, 108008 (2023)

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321.

Zeitschriftenartikel

Shan, N.; Zhang, Y.; Guo, Y.; Zhang, W.; Nie, J.; Fernie, A. R.; Sui, X.: Cucumber malate decarboxylase, CsNADP-ME2, functions in the balance of carbon and amino acid metabolism in fruit. Horticulture Research 10 (12), uhad216 (2023)

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322.

Zeitschriftenartikel

Siodmak, A.; Martinez-Seidel, F.; Rayapuram, N.; Bazin, J.; Alhoraibi, H.; Gentry-Torfer, D.; Tabassum, N.; Sheikh, A. H.; Kise, J.; Blilou, I. et al.; Crespi, M.; Kopka, J.; Hirt, H.: Dynamics of ribosome composition and ribosomal protein phosphorylation in immune signaling in Arabidopsis thaliana. Nucleic Acids Research 51 (21), S. 11876 - 11892 (2023)

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323.

Zeitschriftenartikel

Siqueira, J. A.; Zhang, Y.; Nunes-Nesi, A.; Fernie, A. R.; Araújo, W. L.: Beyond photorespiration: the significance of glycine and serine in leaf metabolism. Trends in Plant Science 28 (10), S. 1092 - 1094 (2023)

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324.

Zeitschriftenartikel

Sperschneider, J.; Yildirir, G.; Rizzi , Y. S.; Malar C, M.; Mayrand Nicol, A.; Sorwar, E.; Villeneuve-Laroche, M.; Chen, E. C. H.; Iwasaki, W.; Brauer, E. K. et al.; Bosnich, W.; Gutjahr, C.; Corradi, N.: Arbuscular mycorrhizal fungi heterokaryons have two nuclear populations with distinct roles in host–plant interactions. Nature Microbiology 8, S. 2142 - 2153 (2023)

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325.

Zeitschriftenartikel

Steensma, P.; Eisenhut, M.; Colinas, M.; Rosado-Souza, L.; Fernie, A. R.; Weber, A. P. M.; Fitzpatrick, T. B.: PYRIDOX(AM)INE 5'-PHOSPHATE OXIDASE3 of Arabidopsis thaliana maintains carbon/nitrogen balance in distinct environmental conditions. Plant Physiology 193 (2), kiad411, S. 1433 - 1455 (2023)

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326.

Zeitschriftenartikel

Tong, H.; Laitinen, R.A.E.; Nikoloski, Z.: Predicting plasticity of rosette growth and metabolic fluxes in Arabidopsis thaliana. New Phytologist 240 (1), S. 426 - 438 (2023)

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327.

Zeitschriftenartikel

Wan, H.; Zhang, Y.; Wu, L.; Zhou, G.; Pan, L.; Fernie, A. R.; Ruan, Y.-L.: Evolution of cytosolic and organellar invertases empowered the colonization and thriving of land plants. Plant Physiology 193 (2), S. 1227 - 1243 (2023)

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328.

Zeitschriftenartikel

Weiszmann, J.; Walther, D.; Clauw, P.; Back, G.; Gunis, J.; Reichardt, I.; Koemeda, S.; Jez, J.; Nordborg, M.; Schwarzerova, J. et al.; Pierides, I.; Nägele, T.; Weckwerth, W.: Metabolome plasticity in 241 Arabidopsis thaliana accessions reveals evolutionary cold adaptation processes. Plant Physiology 193 (2), S. 980 - 1000 (2023)

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329.

Zeitschriftenartikel

Younis, I.Y.; Mohsen, E.; Ibrahim, R.M.; Fernie, A. R.; Alseekh, S.; Salem, M.A.: Non-targeted metabolomics and chemometrics for saffron (Crocus sativus L.) authentication and adulteration detection in relation to its anticholinesterase activity. Food Chemistry Advances 2, 100217 (2023)

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330.

Zeitschriftenartikel

Aarabi, F.; Fernie, A. R.: Elucidating the role of ascorbate in light signaling. Trends in Plant Science 28 (9), S. 978 - 980 (2023)

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331.

Zeitschriftenartikel

Aarabi, F.; Fernie, A. R.: SPOTLIGHT: Ascorbate triggers the switch between cell division and cell differentiation in the Arabidopsis tapetum. Journal of Plant Physiology 288, 154058 (2023)

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332.

Zeitschriftenartikel

Bezold, F.; Scheffer, J.; Wendering, P.; Razaghi-Moghadam, Z.; Trauth, J.; Pook, B.; Nußhär, H.; Hasenjäger, S.; Nikoloski, Z.; Essen, L.-O. et al.; Taxis, C.: Optogenetic control of Cdc48 for dynamic metabolic engineering in yeast. Metabolic Engineering 79, S. 97 - 107 (2023)

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333.

Zeitschriftenartikel

Collas, F.; Dronsella, B.; Kubis, A.; Schann, K.; Binder, S.; Arto, N.; Claassens, N.J.; Kensy, F.; Orsi, E.: Engineering the biological conversion of formate into crotonate in Cupriavidus necator. Metabolic Engineering 79, S. 49 - 65 (2023)

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334.

Zeitschriftenartikel

Figueroa, N. E.; Franz, P.; Luzarowski, M.; Martinez-Seidel, F.; Moreno, J.C.; Childs, D.; Ziemblicka, A.; Sampathkumar, A.; Andersen, T. G.; Tsiavaliaris, G. et al.; Kosmacz, M.; Skirycz, A.: Protein interactome of 3’,5’-cyclic adenosine monophosphate reveals its role in regulating the actin cytoskeleton. The Plant Journal 115 (5), S. 1214 - 1230 (2023)

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335.

Zeitschriftenartikel

Hashemi, S.; Razaghi-Moghadam, Z.; Nikoloski, Z.: Maximizing multi-reaction dependencies provides more accurate and precise predictions of intracellular fluxes than the principle of parsimony. PLoS Computational Biology 19 (9), e1011489 (2023)

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336.

Zeitschriftenartikel

Köhler, C.; Butel, N.: Plant development: How to kill the endosperm. Current Biology 33 (17), S. R912 - R913 (2023)

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337.

Zeitschriftenartikel

Langary, D.; Küken, A.; Nikoloski, Z.: The effective deficiency of biochemical networks. Scientific Reports 13, 14589 (2023)

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338.

Zeitschriftenartikel

Li, R.; Tang, F.; Che, Y.; Fernie, A. R.; Zhou, Q.; Ding, Z.; Yao, Y.; Liu, J.; Wang, Y.; Hu, X. et al.; Guo, J.: MeGLYI-13, a Glyoxalase I Gene in Cassava, Enhances the Tolerance of Yeast and Arabidopsis to Zinc and Copper Stresses. Plants 12 (19), 3375 (2023)

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339.

Zeitschriftenartikel

Qiu, Y.; Li, Z.; Walther, D.; Köhler, C.: Updated phylogeny and protein structure predictions revise the hypothesis on the origin of MADS-box transcription factors in land plants. Molecular Biology and Evolution 40 (9), msad194 (2023)

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340.

Zeitschriftenartikel

Solis-Miranda, J.; Chodasiewicz, M.; Skirycz, A.; Fernie, A. R.; Moschou, P.; Bozhkov, P.; Gutierrez-Beltran, E.: Stress-related biomolecular condensates in plants. Plant Cell 35 (9), S. 3187 - 3204 (2023)

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341.

Zeitschriftenartikel

Tal, L.; Guercio, A. M.; Varshney, K.; Young, A.; Gutjahr, C.; Shabek, N.: C-terminal conformational changes in SCF-D3/MAX2 ubiquitin ligase are required for KAI2-mediated signaling. New Phytologist 239 (6), S. 2067 - 2075 (2023)

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342.

Zeitschriftenartikel

Thirumalaikumar, V.P.; Fernie, A. R.; Skirycz, A.: Untargeted Proteomics and Metabolomics Analysis of Plant Organ Development. Methods in molecular biology (Clifton, N.J.) 2698, S. 75 - 85 (2023)

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343.

Zeitschriftenartikel

Zayed, A.; Farag, M. A.; Mehring, A.; Salem, M. A.; Ibrahim, R. M.; Alseekh, S.; Fernie, A. R.; Ulber, R.: Methyl jasmonate elicitation effect on the metabolic profile of cambial meristematic cells culture derived from sweet basil (Ocimum basilicum L.) in relation to antioxidant activity: Untargeted metabolomics study in a time-based approach. Phytochemistry 213, 113777 (2023)

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344.

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Zhou, Q.; Li, R.; Fernie, A. R.; Che, Y.; Ding, Z.; Yao, Y.; Liu, J.; Wang, Y.; Hu, X.; Guo, J.: Integrated Analysis of Morphological, Physiological, Anatomical and Molecular Responses of Cassava Seedlings to Different Light Qualities. International Journal of Molecular Sciences 24 (18), 14224 (2023)

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345.

Zeitschriftenartikel

Alseekh, S.; Karakas, E.; Zhu, F.; Wijesingha Ahchige, M.; Fernie, A. R.: Plant biochemical genetics in the multiomics era. Journal of Experimental Botany 74 (15), S. 4293 - 4307 (2023)

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346.

Zeitschriftenartikel

Arend, M.; Zimmer, D.; Xu, R.; Sommer, F.; Mühlhaus, T.; Nikoloski, Z.: Proteomics and constraint-based modelling reveal enzyme kinetic properties of Chlamydomonas reinhardtii on a genome scale. Nature Communications 14 (1), 4781 (2023)

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347.

Zeitschriftenartikel

Correa Cordoba, S.; Tong, H.; Burgos, A.; Zhu, F.; Alseekh, S.; Fernie, A. R.; Nikoloski, Z.: Identification of gene function based on models capturing natural variability of Arabidopsis thaliana lipid metabolism. Nature Communications 14 (1), 4897 (2023)

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348.

Zeitschriftenartikel

de Souza, L. P.; Bitocchi, E.; Papa, R.; Tohge, T.; Fernie, A. R.: Decreased metabolic diversity in common beans associated with domestication revealed by untargeted metabolomics, information theory, and molecular networking. The Plant Journal 115 (4), S. 1021 - 1036 (2023)

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349.

Zeitschriftenartikel

Garcia, F. H. S.; Domingues Júnior, A.P.; Lima Nogueira, M.; de Paula, S.; Ferreira, J.; Lavres, J.; Martins, S. J.; Fernie, A. R.; Kluge, R. A.: Impact of Leifsonia xyli subsp. xyli titer on nutritional status, and metabolism of sugar cane. Plant and Soil 493, S. 341 - 354 (2023)

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350.

Zeitschriftenartikel

Gramma, V.; Wahl, V.: RNA In Situ Hybridization on Plant Tissue Sections: Expression Analysis at Cellular Resolution. Methods in molecular biology (Clifton, N.J.) 2686 (2023)

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