Journal Article (395)

51.
Journal Article
Mengin, V.; Pyl, E. T.; Moraes, T. A.; Sulpice, R.; Krohn, N.; Encke, B.; Stitt, M.: Photosynthate Partitioning to Starch in Arabidopsis is Insensitive to Light Intensity but Sensitive to Photoperiod due to a Restriction on Growth in the Light in Short Photoperiods. Plant, Cell and Environment 40 (11-SI), pp. 2608 - 2627 (2017)
52.
Journal Article
Westhues, M.; Schrag, T. A.; Heuer, C.; Thaller, G.; Utz, H. F.; Schipprack, W.; Thiemann, A.; Seifert, F.; Ehret, A.; Schlereth, A. et al.; Stitt, M.; Nikoloski, Z.; Willmitzer, L.; Schoen, C. C.; Scholten, S.; Melchinger, A. E.: Omics-based hybrid prediction in maize. Theoretical and Applied Genetics 130 (9), pp. 1927 - 1939 (2017)
53.
Journal Article
Mackinder, L. C. M.; Meyer, M. T.; Mettler, T.; Chen, V. K.; Mitchell, M. C.; Caspari, O.; Rosenzweig, E. S. F.; Pallesen, L.; Reeves, G.; Itakura, A. et al.; Roth, R.; Sommer, F.; Geimer, S.; Mühlhaus, T.; Schroda, M.; Goodenough, U.; Stitt, M.; Griffiths, H.; Jonikas, M. C.: A repeat protein links Rubisco to form the eukaryotic carbon-concentrating organelle. Proceedings of the National Academy of Sciences of the United States of America 113 (21), pp. 5958 - 5963 (2016)
54.
Journal Article
Zhu, X.-G.; Lynch, J. P.; LeBauer, D. S.; Millar, A. J.; Stitt, M.; Long, S. P.: Plants in silico: why, why now and what?an integrative platform for plant systems biology research. Plant, Cell and Environment 39 (5), pp. 1049 - 1057 (2016)
55.
Journal Article
Cookson, S. J.; Yadav, U. P.; Klie, S.; Morcuende, R.; Usadel, B.; Lunn, J. E.; Stitt, M.: Temporal kinetics of the transcriptional response to carbon depletion and sucrose readdition in Arabidopsis seedlings. Plant, Cell and Environment 39 (4), pp. 768 - 786 (2016)
56.
Journal Article
Lauxmann, M.; Annunziata, M. G.; Brunoud, G.; Wahl, V.; Koczut, A.; Burgos, A.; Olas, J. J.; Maximova, E.; Abel, C.; Schlereth, A. et al.; Soja, A. M.; Bläsing, O. E.; Lunn, J. E.; Vernoux, T.; Stitt, M.: Reproductive failure in Arabidopsis thaliana under transient carbohydrate limitation: flowers and very young siliques are jettisoned and the meristem is maintained to allow successful resumption of reproductive growth. Plant, Cell and Environment 39 (4), pp. 745 - 767 (2016)
57.
Journal Article
Provart, N. J.; Alonso, J.; Assmann, S. M.; Bergmann, D.; Brady, S. M.; Brkljacic, J.; Browse, J.; Chapple, C.; Colot, V.; Cutler, S. et al.; Dangl, J.; Ehrhardt, D.; Friesner, J. D.; Frommer, W. B.; Grotewold, E.; Meyerowitz, E.; Nemhauser, J.; Nordborg, M.; Pikaard, C.; Shanklin, J.; Somerville, C.; Stitt, M.; Torii, K. U.; Waese, J.; Wagner, D.; McCourt, P.: 50 years of Arabidopsis research: highlights and future directions. New Phytologist 209 (3), pp. 921 - 944 (2016)
58.
Journal Article
Coluccio Leskow, C.; Kamenetzky, L.; Guadalupe Dominguez, P.; Diaz Zirpolo, J. A.; Obata, T.; Costa, H.; Marti, M.; Taboga, O.; Keurentjes, J.; Sulpice, R. et al.; Ishihara, H.; Stitt, M.; Fernie, A. R.; Carrari, F.: Allelic differences in a vacuolar invertase affect Arabidopsis growth at early plant development. Journal of Experimental Botany 67 (14), pp. 4091 - 4103 (2016)
59.
Journal Article
Czedik-Eysenberg, A.; Arrivault, S.; Lohse, M.A.; Feil, R.; Krohn, N.; Encke, B.; Nunes-Nesi, A.; Fernie, A. R.; Lunn, J. E.; Sulpice, R. et al.; Stitt, M.: The interplay between carbon availability and growth in different zones of the growing maize leaf. Plant Physiology 172 (2), pp. 943 - 967 (2016)
60.
Journal Article
Figueroa, C. M.; Feil, R.; Ishihara, H.; Watanabe, M.; Kolling, K.; Krause, U.; Höhne, M.; Encke, B.; Plaxton, W. C.; Zeeman, S. C. et al.; Li, Z.; Schulze, W. X.; Hoefgen, R.; Stitt, M.; Lunn, J. E.: Trehalose 6-phosphate coordinates organic and amino acid metabolism with carbon availability. The Plant Journal 85 (3), pp. 410 - 423 (2016)
61.
Journal Article
Flis, A.; Sulpice, R.; Seaton, D. D.; Ivakov, A.; Liput, M.; Abel, C.; Millar, A. J.; Stitt, M.: Photoperiod-dependent changes in the phase of core clock transcripts and global transcriptional outputs at dawn and dusk in Arabidopsis. Plant, Cell and Environment 39 (9), pp. 1955 - 1981 (2016)
62.
Journal Article
Tohge, T.; Wendenburg, R.; Ishihara, H.; Nakabayashi, R.; Watanabe, M.; Sulpice, R.; Hoefgen, R.; Takayama, H.; Saito, K.; Stitt, M. et al.; Fernie, A. R.: Characterization of a recently evolved flavonol-phenylacyltransferase gene provides signatures of natural light selection in Brassicaceae. Nature Communications 7, 12399 (2016)
63.
Journal Article
Toubiana, D.; Xue, W.; Zhang, N.; Kremling, K.; Gur, A.; Pilosof, S.; Gibon, Y.; Stitt, M.; Buckler, E. S.; Fernie, A. R. et al.; Fait, A.: Correlation-Based Network Analysis of Metabolite and Enzyme Profiles Reveals a Role of Citrate Biosynthesis in Modulating N and C Metabolism in Zea mays. Frontiers in Plant Science 7, 1022 (2016)
64.
Journal Article
Vicente, R.; Pérez, P.; Martínez-Carrasco, R.; Feil, R.; Lunn, J. E.; Watanabe, M.; Arrivault, S.; Stitt, M.; Hoefgen, R.; Morcuende, R.: Metabolic and Transcriptional Analysis of Durum Wheat Responses to Elevated CO2 at Low and High Nitrate Supply. Plant Cell Physiology 57 (10), pp. 2133 - 2146 (2016)
65.
Journal Article
Arrivault, S.; Guenther, M.; Fry, S. C.; Fünfgeld, M. F.F.; Veye, D.; Mettler-Altmann, T.; Stitt, M.; Lunn, J. E.: Synthesis and Use of Stable-Isotope-Labeled Internal Standards for Quantification of Phosphorylated Metabolites by LC-MS/MS. Analytical Chemistry 87 (13), pp. 6896 - 6904 (2015)
66.
Journal Article
Ferraro, G.; D'Angelo, M.; Sulpice, R.; Stitt, M.; Valle, E. M.: Reduced levels of NADH-dependent glutamate dehydrogenase decrease the glutamate content of ripe tomato fruit but have no effect on green fruit or leaves. Journal of Experimental Botany 66 (11), pp. 3381 - 3389 (2015)
67.
Journal Article
Khozaei, M.; Fisk, S.; Lawson, T.; Gibon, Y.; Sulpice, R.; Stitt, M.; Lefebvre, S. C.; Raines, C. A.: Overexpression of Plastid Transketolase in Tobacco Results in a Thiamine Auxotrophic Phenotype. Plant Cell 27 (2), pp. 432 - 447 (2015)
68.
Journal Article
Apelt, F.; Breuer, D.; Nikoloski, Z.; Stitt, M.; Kragler, F.: Phytotyping(4D): a light-field imaging system for non-invasive and accurate monitoring of spatio-temporal plant growth. The Plant Journal 82 (4), pp. 693 - 706 (2015)
69.
Journal Article
Baerenfaller, K.; Massonnet, C.; Hennig, L.; Russenberger, D.; Sulpice, R.; Walsh, S.; Stitt, M.; Granier, C.; Gruissem, W.: A long photoperiod relaxes energy management in Arabidopsis leaf six. Current Plant Biology 2, pp. 34 - 45 (2015)
70.
Journal Article
Flis, A.; Fernandez, A. P.; Zielinski, T.; Mengin, V.; Sulpice, R.; Stratford, K.; Hume, A.; Pokhilko, A.; Southern, M. M.; Seaton, D. D. et al.; McWatters, H. G.; Stitt, M.; Halliday, K. J.; Millar, A. J.: Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure. Open biology 5 (10), 150042 (2015)
71.
Journal Article
Heise, R.; Fernie, A. R.; Stitt, M.; Nikoloski, Z.: Pool size measurements facilitate the determination of fluxes at branching points in non-stationary metabolic flux analysis: the case of Arabidopsis thaliana. Frontiers in Plant Science 6, 386 (2015)
72.
Journal Article
Ishihara, H.; Obata, T.; Sulpice, R.; Fernie, A. R.; Stitt, M.: Quantifying Protein Synthesis and Degradation in Arabidopsis by Dynamic 13CO2 Labeling and Analysis of Enrichment in Individual Amino Acids in Their Free Pools and in Protein. Plant Physiology 168 (1), pp. 74 - 93 (2015)
73.
Journal Article
Lambers, H.; Finnegan, P. M.; Jost, R.; Plaxton, W. C.; Shane, M. W.; Stitt, M.: Phosphorus nutrition in Proteaceae and beyond. Nature Plants 1, 15109 (2015)
74.
Journal Article
Pham, P. A.; Wahl, V.; Tohge, T.; de Souza, L. P.; Zhang, Y.; Do, P. T.; Olas, J. J.; Stitt, M.; Araujo, W. L.; Fernie, A. R.: Analysis of knockout mutants reveals non-redundant functions of poly(ADP-ribose)polymerase isoforms in Arabidopsis. Plant Molecular Biology 89 (4-5), pp. 319 - 338 (2015)
75.
Journal Article
Pilkington, S. M.; Encke, B.; Krohn, N.; Höhne, M.; Stitt, M.; Pyl, E. T.: Relationship between starch degradation and carbon demand for maintenance and growth in Arabidopsis thaliana in different irradiance and temperature regimes. Plant, Cell and Environment 38 (1), pp. 157 - 171 (2015)
76.
Journal Article
Saladie, M.; Canizares, J.; Phillips, M. A.; Rodriguez-Concepcion, M.; Larrigaudiere, C.; Gibon, Y.; Stitt, M.; Lunn, J. E.; Garcia-Mas, J.: Comparative transcriptional profiling analysis of developing melon (Cucumis melo L.) fruit from climacteric and non-climacteric varieties. BMC Genomics 16, 440 (2015)
77.
Journal Article
Zhang, N.; Gibon, Y.; Wallace, J. G.; Lepak, N.; Li, P.; Dedow, L.; Chen, C.; So, Y.-S.; Kremling, K.; Bradbury, P. J. et al.; Brutnell, T.; Stitt, M.; Buckler, E. S.: Genome-wide association of carbon and nitrogen metabolism in the maize nested association mapping population. Plant Physiology 168 (2), pp. 575 - 583 (2015)
78.
Journal Article
Wallace, J. G.; Bradbury, P. J.; Zhang, N.; Gibon, Y.; Stitt, M.; Buckler, E. S.: Association Mapping across Numerous Traits Reveals Patterns of Functional Variation in Maize. PLoS Genetics 10 (12), e1004845 (2014)
79.
Journal Article
Kleessen, S.; Laitinen, R.; Fusari, C. M.; Antonio, C.; Sulpice, R.; Fernie, A. R.; Stitt, M.; Nikoloski, Z.: Metabolic efficiency underpins performance trade-offs in growth of Arabidopsis thaliana. Nature Communications 5, 3537 (2014)
80.
Journal Article
Arrivault, S.; Guenther, M.; Florian, A.; Encke, B.; Feil, R.; Vosloh, D.; Lunn, J. E.; Sulpice, R.; Fernie, A. R.; Stitt, M. et al.; Schulze, W. X.: Dissecting the Subcellular Compartmentation of Proteins and Metabolites in Arabidopsis Leaves Using Non-aqueous Fractionation. Molecular and Cellular Proteomics 13 (9), pp. 2246 - 2259 (2014)
81.
Journal Article
Chew, Y. H.; Wenden, B.; Flis, A.; Mengin, V.; Taylor, J.; Davey, C. L.; Tindal, C.; Thomas, H.; Ougham, H. J.; de Reffye, P. et al.; Stitt, M.; Williams, M.; Muetzelfeldt, R.; Halliday, K. J.; Millar, A. J.: Multiscale digital Arabidopsis predicts individual organ and whole-organism growth. Proceedings of the National Academy of Sciences of the United States of America 111 (39), pp. E4127 - E4136 (2014)
82.
Journal Article
Dasgupta, K.; Khadilkar, A.S.; Sulpice, R.; Pant, B.; Scheible, W.-R.; Fisahn, J.; Stitt, M.; Ayre, B.G.: Expression of sucrose transporter cDNAs specifically in companion cells enhances phloem loading and long-distance transport of sucrose but leads to an inhibition of growth and the perception of a phosphate limitation. Plant Physiology 165 (2), pp. 715 - 731 (2014)
83.
Journal Article
Heise, R.; Arrivault, S.; Szecowka, M.; Tohge, T.; Nunes-Nesi, A.; Stitt, M.; Nikoloski, Z.; Fernie, A. R.: Flux profiling of photosynthetic carbon metabolism in intact plants. Nature Protocols 9 (8), pp. 1803 - 1824 (2014)
84.
Journal Article
Henry, C.; Bledsoe, S. W.; Siekman, A.; Kollman, A.; Waters, B. M.; Feil, R.; Stitt, M.; Lagrimini, L. M.: The trehalose pathway in maize: conservation and gene regulation in response to the diurnal cycle and extended darkness. Journal of Experimental Botany 65 (20), pp. 5959 - 5973 (2014)
85.
Journal Article
Kuppusamy, T.; Giavalisco, P.; Arvidsson, S.; Sulpice, R.; Stitt, M.; Finnegan, P. M.; Scheible, W.-R.; Lambers, H.; Jost, R.: Lipid Biosynthesis and Protein Concentration Respond Uniquely to Phosphate Supply during Leaf Development in Highly Phosphorus-Efficient Hakea prostrata. Plant Physiology 166 (4), pp. 1891 - 911 (2014)
86.
Journal Article
Lohse, M.; Nagel, A.; Herter, T.; May, P.; Schroda, M.; Zrenner, R.; Tohge, T.; Fernie, A. R.; Stitt, M.; Usadel, B.: Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data. Plant Cell Environment 37 (5), pp. 1250 - 1258 (2014)
87.
Journal Article
Lunn, J. E.; Delorge, I.; Figueroa, C. M.; Van Dijck, P.; Stitt, M.: Trehalose metabolism in plants. The Plant Journal 79 (4), pp. 544 - 567 (2014)
88.
Journal Article
Mettler, T.; Mühlhaus, T.; Hemme, D.; Schöttler, M. A.; Rupprecht, J.; Idoine, A.; Veyel, D.; Pal, S. K.; Yaneva-Roder, L.; Winck, F. V. et al.; Sommer, F.; Vosloh, D.; Seiwert, B.; Erban, A.; Burgos, A.; Arvidsson, S.; Schönfelder, S.; Arnold, A.; Günther, M.; Krause, U.; Lohse, M.; Kopka, J.; Nikoloski, Z.; Mueller-Roeber, B.; Willmitzer, L.; Bock, R.; Schroda, M.; Stitt, M.: Systems Analysis of the Response of Photosynthesis, Metabolism, and Growth to an Increase in Irradiance in the Photosynthetic Model Organism Chlamydomonas reinhardtii. The Plant Cell 26 (6), pp. 2310 - 2350 (2014)
89.
Journal Article
Mugford, S. T.; Fernandez, O.; Brinton, J.; Flis, A.; Krohn, N.; Encke, B.; Feil, R.; Sulpice, R.; Lunn, J. E.; Stitt, M. et al.; Smith, A. M.: Regulatory Properties of ADP Glucose Pyrophosphorylase Are Required for Adjustment of Leaf Starch Synthesis in Different Photoperiods. Plant Physiology 166 (4), pp. 1733 - 47 (2014)
90.
Journal Article
Pokhilko, A.; Flis, A.; Sulpice, R.; Stitt, M.; Ebenhoh, O.: Adjustment of carbon fluxes to light conditions regulates the daily turnover of starch in plants: a computational model. Molecular BioSystems 10 (3), pp. 613 - 627 (2014)
91.
Journal Article
Schmollinger, S.; Mühlhaus, T.; Boyle, N. R.; Blaby, I. K.; Casero, D.; Mettler, T.; Moseley, J. L.; Kropat, J.; Sommer, F.; Strenkert, D. et al.; Hemme, D.; Pellegrini, M.; Grossman, A. R.; Stitt, M.; Schroda, M.; Merchant, S. S.: Nitrogen‐Sparing Mechanisms in Chlamydomonas Affect the Transcriptome, the Proteome, and Photosynthetic Metabolism. The Plant Cell 26 (4), pp. 1410 - 1435 (2014)
92.
Journal Article
Stitt, M.: Chill out with rockcress: quantitative genetics of frost tolerance in the North American wild perennial Boechera stricta. Plant, Cell and Environment 37 (11), pp. 2453 - 5 (2014)
93.
Journal Article
Stitt, M.; Gibon, Y.: Why measure enzyme activities in the era of systems biology? Trends in Plant Science 19 (4 - SI), pp. 256 - 265 (2014)
94.
Journal Article
Stitt, M.; ZHU, X.: The large pools of metabolites involved in intercellular metabolite shuttles in C4 photosynthesis provide enormous flexibility and robustness in a fluctuating light environment. Plant, Cell and Environment 37 (9), p. 1988 - 1988 (2014)
95.
Journal Article
Sulpice, R.; Flis, A.; Ivakov, A.; Apelt, F.; Krohn, N.; Encke, B.; Abel, C.; Feil, R.; Lunn, J. E.; Stitt, M.: Arabidopsis coordinates the diurnal regulation of carbon allocation and growth across a wide range of photoperiods. Molecular Plant 7 (1), pp. 137 - 155 (2014)
96.
Journal Article
Wang, L.; Czedik-Eysenberg, A.; Mertz, R. A.; Si, Y.; Tohge, T.; Nunes-Nesi, A.; Arrivault, S.; Dedow, L. K.; Bryant, D. W.; Zhou, W. et al.; Xu, J.; Weissmann, S.; Studer, A.; Li, P.; Zhang, C.; LaRue, T.; Shao, Y.; Ding, Z.; Sun, Q.; Patel, R. V.; Turgeon, R.; Zhu, X.; Provart, N. J.; Mockler, T. C.; Fernie, A. R.; Stitt, M.; Liu, P.; Brutnell, T. P.: Comparative analyses of C-4 and C-3 photosynthesis in developing leaves of maize and rice. Nature biotechnology 32 (11), pp. 1158 - 1165 (2014)
97.
Journal Article
Yadav, U. P.; Yadav, U. P.; Ivakov, A.; Feil, R.; Duan, G. Y.; Walther, D.; Giavalisco, P.; Piques, M.; Carillo , P.; Hubberten, H. M. et al.; Stitt, M.; Lunn, J. E.: The sucrose–trehalose 6-phosphate (Tre6P) nexus: specificity and mechanisms of sucrose signalling by Tre6P. Journal of Experimental Botany 65 (4), pp. 1051 - 1068 (2014)
98.
Journal Article
Sulpice, R.; Ishihara, H.; Schlereth, A.; Cawthray, G. R.; Encke, B.; Giavalisco, P.; Ivakov, A.; Arrivault, S.; Jost, R.; Krohn, N. et al.; Kuo, J.; Laliberte, E.; Pearse, S. J.; Raven, J. A.; Scheible, W.-R.; Teste, F.; Veneklaas, E. J.; Stitt, M.; Lambers, H.: Low levels of ribosomal RNA partly account for the very high photosynthetic phosphorus-use efficiency of Proteaceae species. Plant, Cell and Environment 36 (6), pp. 1276 - 1298 (2013)
99.
Journal Article
Blaby, I. K.; Glaesener, A. G.; Mettler, T.; Fitz-Gibbon, S. T.; Gallaher, S. D.; Liu, B.; Boyle, N. R.; Kropat, J.; Stitt, M.; Johnson, S. et al.; Benning, C.; Pellegrini, M.; Casero, D.; Merchant, S. S.: Systems-Level Analysis of Nitrogen Starvation-Induced Modifications of Carbon Metabolism in a Chlamydomonas reinhardtii Starchless Mutant. The Plant Cell 5 (11), pp. 4305- - 4323 (2013)
100.
Journal Article
Long, S.; Stitt, M.: Special issue on plant computational biology. Plant, Cell and Environment 36 (9), pp. 1573 - 1574 (2013)
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