Publications of Mark Stitt

Journal Article (393)

1.
Journal Article
Fünfgeld, M. F.F.; Wang, W.; Ishihara, H.; Arrivault, S.; Feil, R.; Smith, A. M.; Stitt, M.; Lunn, J. E.; Niittylä, T.: Sucrose synthases are not involved in starch synthesis in Arabidopsis leaves. Nature Plants 8, pp. 574 - 582 (2022)
2.
Journal Article
Ishihara, H.; Alseekh, S.; Feil, R.; Perera, P.; George, G. M.; Niedzwiecki, P.; Arrivault, S.; Zeeman, S. C.; Fernie, A. R.; Lunn, J. E. et al.; Smith, A. M.; Stitt, M.: Rising rates of starch degradation during daytime and trehalose 6-phosphate optimize carbon availability. Plant Physiology, kiac162 (2022)
3.
Journal Article
Borghi, M.; Arrivault, S.; Günther, M.; Medeiros, D.B.; Dell'Aversana, E.; Fusco, G.; Carillo, P.; Ludwig, M.; Fernie, A. R.; Lunn, J. E. et al.; Stitt, M.: Metabolic profiles in C-3, C-3-C-4 intermediate, C-4-like, and C-4 species in the genus Flaveria. Journal of Experimental Botany 73 (5), pp. 1581 - 1601 (2022)
4.
Journal Article
Ribeiro, C.; Stitt, M.; Hotta, C.: How Stress Affects Your Budget-Stress Impacts on Starch Metabolism. Frontiers in Plant Science 13, 774060 (2022)
5.
Journal Article
Treves, H.; Küken, A.; Arrivault, S.; Ishihara, H.; Hoppe, I.; Erban, A.; Höhne, M.; Moraes, T. A.; Kopka, J.; Szymanski, J. et al.; Nikoloski, Z.; Stitt, M.: Carbon flux through photosynthesis and central carbon metabolism show distinct patterns between algae, C-3 and C-4 plants. Nature Plants 8, pp. 78 - 91 (2021)
6.
Journal Article
David, Z.; Swart, C.; Graf, A.; Arrivault, S.; Tillich, M.; Proost, S.; Nikoloski, Z.; Stitt, M.; Bock, R.; Mühlhaus, M. et al.; Boulouis, A.: Topology of the redox network during induction of photosynthesis as revealed by time-resolved proteomics in tobacco. Science Advances 7 (51), eabi8307 (2021)
7.
Journal Article
Stitt, M.; Borghi, G.L.; Arrivault, S.: Targeted Metabolite Profiling as a Top-Down Approach to Uncover Inter-Species Diversity and Identify Key Conserved Operational Features in the Calvin-Benson cycle. Journal of Experimental Botany 72 (17), pp. 5961 - 5986 (2021)
8.
Journal Article
Peixoto, B.; Moraes, T. A.; Mengin, V.; Margalha, L.; Vicente, R.; Feil, R.; Höhne, M.; Sousa, A. G. G.; Lilue, J.; Stitt, M. et al.; Lunn, J. E.; Baena-González, E.: Impact of the SnRK1 protein kinase on sucrose homeostasis and the transcriptome during the diel cycle. Plant Physiology 187 (3), pp. 1357 - 1373 (2021)
9.
Journal Article
Ishihara, H.; Moraes, T. A.; Arrivault, S.; Stitt, M.: Assessing Protein Synthesis and Degradation Rates in Arabidopsis thaliana Using Amino Acid Analysis. Current Protocols 1 (5), e114 (2021)
10.
Journal Article
Zhang, Y.; Giese, J.; Kerbler, S.M.-L.; Siemiatkowska, B.; de Souza, L. P.; Alpers, J.; Medeiros, D.B.; Hincha, D. K.; Daloso, D. M.; Stitt, M. et al.; Finkemeier, I.; Fernie, A. R.: Two mitochondrial phosphatases, PP2c63 and Sal2, are required for posttranslational regulation of the TCA cycle in Arabidopsis. Molecular Plant 14 (7), pp. 1104 - 1118 (2021)
11.
Journal Article
Fichtner, F.; Barbier, F. F.; Annunziata, M. G.; Feil, R.; Olas, J. J.; Mueller-Roeber, B.; Stitt, M.; Beveridge, C. A.; Lunn, J. E.: Regulation of shoot branching in Arabidopsis by trehalose 6-phosphate. New Phytologist 229 (4), pp. 2135 - 2151 (2021)
12.
Journal Article
Krahmer, J.; Abbas, A.; Mengin, V.; Ishihara, H.; Romanowski, A.; Furniss, J. J.; Moraes, T. A.; Krohn, N.; Annunziata, M. G.; Feil, R. et al.; Alseekh, S.; Obata, T.; Fernie, A. R.; Stitt, M.; Halliday, K. J.: Phytochromes control metabolic flux, and their action at the seedling stage determines adult plant biomass. Journal of Experimental Botany 72 (8), pp. 3263 - 3278 (2021)
13.
Journal Article
Ermakova, M.; Arrivault, S.; Giuliani, R.; Danila, F.; Alonso-Cantabrana, H.; Vlad, D.; Ishihara, H.; Feil, R.; Guenther, M.; Borghi, G.L. et al.; Covshoff, S.; Ludwig, M.; Cousins, A.B.; Langdale, J.A.; Kelly, S.; Lunn, J. E.; Stitt, M.; von Caemmerer, S.; Furbank, R.T.: Installation of C4 photosynthetic pathway enzymes in rice using a single construct. Plant Biotechnology Journal 19 (3), pp. 575 - 588 (2020)
14.
Journal Article
Fernie, A. R.; Bachem, C.W.B.; Helariutta, Y.; Neuhaus, H.E.; Prat, S.; Ruan, Y.-L.; Stitt, M.; Sweetlove, L.J.; Tegeder, M.; Wahl, V. et al.; Sonnewald, S.; Sonnewald, U.: Synchronization of developmental, molecular and metabolic aspects of source–sink interactions. Nature Plants 6, pp. 55 - 66 (2020)
15.
Journal Article
Fichtner, F.; Olas, J. J.; Feil, R.; Watanabe, M.; Krause, U.; Hoefgen, R.; Stitt, M.; Lunn, J. E.: Functional features of TREHALOSE-6-PHOSPHATE SYNTHASE1 - an essential enzyme in Arabidopsis thaliana. The Plant Cell 32 (6), pp. 1949 - 1972 (2020)
16.
Journal Article
Hammel, A.; Sommer, F.; Zimmer, D.; Stitt, M.; Mühlhaus, T.; Schroda, M.: Overexpression of Sedoheptulose-1,7-Bisphosphatase Enhances Photosynthesis in Chlamydomonas reinhardtii and Has No Effect on the Abundance of Other Calvin-Benson Cycle Enzymes. Frontiers in Plant Science 11, 868 (2020)
17.
Journal Article
Lin, H.; Arrivault, S.; Coe, R. A.; Karki, S.; Covshoff, S.; Bagunu, E.; Lunn, J. E.; Stitt, M.; Furbank, R. T.; Hibberd, J. M. et al.; Quick, W. P.: A Partial C4 Photosynthetic Biochemical Pathway in Rice. Frontiers in Plant Science 11, 564463 (2020)
18.
Journal Article
Li, X.; Sanagi, M.; Lu, Y.; Nomura, Y.; Stolze, S.C.; Yasuda, S.; Saijo, Y.; Schulze, W.X.; Feil, R.; Stitt, M. et al.; Lunn, J. E.; Nakagami, H.; Sato, T.; Yamaguchi, J.: Protein Phosphorylation Dynamics Under Carbon/Nitrogen-Nutrient Stress and Identification of a Cell Death-Related Receptor-Like Kinase in Arabidopsis. Frontiers in Plant Scienc 11, 377 (2020)
19.
Journal Article
Obata, T.; Klemens, P.A.W.; Rosado-Souza, L.; Schlereth, A.; Gisel, A.; Stavolone, L.; Zierer, W.; Morales, N.; Mueller, L.A.; Zeeman, S.C. et al.; Ludewig, F.; Stitt, M.; Sonnewald, U.; Neuhaus, H.E.; Fernie, A. R.: Metabolic profiles of six African cultivars of cassava (Manihot esculenta Crantz) highlight bottlenecks of root yield. The Plant Journal 102 (6), pp. 1202 - 1219 (2020)
20.
Journal Article
Treves, H.; Siemiatkowska, B.; Luzarowska, U.; Murik, O.; Fernandez-Pozo, N.; Moraes, T. A.; Erban, A.; Armbruster, U.; Brotman, Y.; Kopka, J. et al.; Rensing, S. A.; Szymanski, J.; Stitt, M.: Multi-omics reveals mechanisms of total resistance to extreme illumination of a desert alga. Nature Plants 6, pp. 1031 - 1043 (2020)
21.
Journal Article
Moraes, T. A.; Mengin, V.; Annunziata, M. G.; Encke, B.; Krohn, N.; Höhne, M.; Stitt, M.: Response of the Circadian Clock and Diel Starch Turnover to One Day of Low Light or Low CO2. Plant Physiology 179 (4), pp. 1457 - 1478 (2019)
22.
Journal Article
Arrivault, S.; Moraes, T. A.; Obata, T.; Medeiros, D.B.; Fernie, A. R.; Boulouis, A.; Ludwig, M.; Lunn, J. E.; Borghi, G.L.; Schlereth, A. et al.; Guenther, M.; Stitt, M.: Metabolite profiles reveal interspecific variation in operation of the Calvin–Benson cycle in both C4 and C3 plants. Journal of Experimental Botany 70 (6), pp. 1843 - 1858 (2019)
23.
Journal Article
Amthor, J. S.; Bar-Even, A.; Hanson, A. D.; Millar, A. H.; Stitt, M.; Sweetlove, L. J.; Tyerman, S. D.: Engineering Strategies to Boost Crop Productivity by Cutting Respiratory Carbon Loss. Plant Cell 31 (2), pp. 297 - 314 (2019)
24.
Journal Article
Belouah, I.; Nazaret, C.; Petriacq, P.; Prigent, S.; Benard, C.; Mengin, V.; Blein-Nicolas, M.; Denton, A. K.; Balliau, T.; Auge, S. et al.; Bouchez, O.; Mazat, J.-P.; Stitt, M.; Usadel, B.; Zivy, M.; Beauvoit, B.; Gibon, Y.; Colombie, S.: Modeling Protein Destiny in Developing Fruit. Plant Physiology 180 (3), pp. 1709 - 1724 (2019)
25.
Journal Article
Borghi, G.L.; Moraes, T. A.; Günther, M.; Feil, R.; Mengin, V.; Lunn, J. E.; Stitt, M.; Arrivault, S.: Relationship between irradiance and levels of Calvin-Benson cycle and other intermediates in the model eudicot Arabidopsis and the model monocot rice. Journal of Experimental Botany 70 (20), pp. 5809 - 5825 (2019)
26.
Journal Article
Ferrari, C.; Proost, S.; Janowski, M.; Becker, J.; Nikoloski, Z.; Bhattacharya, D.; Price, D.; Tohge, T.; Bar-Even, A.; Fernie, A. R. et al.; Stitt, M.; Mutwil, M.: Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida. Nature Communications 10, 737 (2019)
27.
Journal Article
Flis, A.; Mengin, V.; Ivakov, A.; Mugford, S.T.; Hubberten, H. M.; Encke, B.; Krohn, N.; Höhne, M.; Feil, R.; Hoefgen, R. et al.; Lunn, J. E.; Millar, A.J.; Smith, A.M.; Sulpice, R.; Stitt, M.: Multiple circadian clock outputs regulate diel turnover of carbon and nitrogen reserves. Plant, Cell and Environment 42 (2), pp. 549 - 573 (2019)
28.
Journal Article
Rosado-Souza, L.; David, L.C.; Drapal, M.; Fraser, P.D.; Hofmann, J.; Klemens, P.A.W.; Ludewig, F.; Neuhaus, H.E.; Obata, T.; Perez-Fons, L. et al.; Schlereth, A.; Sonnewald, U.; Stitt, M.; Zeeman, S.C.; Zierer, W.; Fernie, A. R.: Cassava Metabolomics and Starch Quality. Current protocols in plant biology 4 (4), e20102 (2019)
29.
Journal Article
Schwacke, R.; Ponce-Soto, G. Y.; Krause, K.; Bolger, A. M.; Arsova, B.; Hallab, A.; Gruden, K.; Stitt, M.; Bolger, M. E.; Usadel, B.: MapMan4: A Refined Protein Classification and Annotation Framework Applicable to Multi-Omics Data Analysis. Molecular Plant 12 (6), pp. 879 - 892 (2019)
30.
Journal Article
dos Anjos, L.; Pandey, P. K.; Moraes, T. A.; Feil, R.; Lunn, J. E.; Stitt, M.: Feedback regulation by trehalose 6-phosphate slows down starch mobilization below the rate that would exhaust starch reserves at dawn in Arabidopsis leaves. Plant Direct 2 (8), e00078 (2018)
31.
Journal Article
Annunziata, M. G.; Apelt, F.; Carillo, P.; Krause, U.; Feil, R.; Koehl, K. I.; Lunn, J. E.; Stitt, M.: Response of Arabidopsis primary metabolism and circadian clock to low night temperature in a natural light environment. Journal of Experimental Botany 69 (20), pp. 4881 - 4895 (2018)
32.
Journal Article
Küken, A.; Sommer, F.; Yaneva-Roder, L.; Mackinder, L. C. M.; Höhne, M.; Geimer, S.; Jonikas, M. C.; Schroda, M.; Stitt, M.; Nikoloski, Z. et al.; Mettler, T.: Effects of microcompartmentation on flux distribution and metabolic pools in Chlamydomonas reinhardtii chloroplasts. eLife 7, e37960 (2018)
33.
Journal Article
Roach, M.; Arrivault, S.; Mahboubi, A.; Krohn, N.; Sulpice, R.; Stitt, M.; Niittyla, T.: Spatially resolved metabolic analysis reveals a central role for transcriptional control in carbon allocation to wood (vol 68, pg 3529, 2017). Journal of Experimental Botany 69 (16), pp. 4143 - 4144 (2018)
34.
Journal Article
Seaton, D. D.; Graf, A.; Baerenfaller, K.; Stitt, M.; Millar, A. J.; Gruissem, W.: Photoperiodic control of the Arabidopsis proteome reveals a translational coincidence mechanism. Molecular Systems Biology 14 (3), e7962 (2018)
35.
Journal Article
Verbančič, J.; Lunn, J. E.; Stitt, M.; Persson, S.: Carbon Supply and the Regulation of Cell Wall Synthesis. Molecular Plant 11 (1), pp. 75 - 94 (2018)
36.
Journal Article
Annunziata, M. G.; Apelt, F.; Carillo, P.; Krause, U.; Feil, R.; Mengin, V.; Lauxmann, M.; Koehl, K. I.; Nikoloski, Z.; Stitt, M. et al.; Lunn, J. E.; Raines, C.: Getting back to nature: a reality check for experiments in controlled environments. Journal of Experimental Botany 68 (16), pp. 4463 - 4477 (2017)
37.
Journal Article
Apelt, F.; Breuer, D.; Olas, J. J.; Annunziata, M. G.; Flis, A.; Nikoloski, Z.; Kragler, F.; Stitt, M.: Circadian, Carbon, and Light Control of Expansion Growth and Leaf Movement. Plant Physiology 174 (3), pp. 1949 - 1968 (2017)
38.
Journal Article
Arrivault, S.; Obata, T.; Szecówka, M.; Mengin, V.; Guenther, M.; Höhne, M.; Fernie, A. R.; Stitt, M.: Metabolite pools and carbon flow during C4 photosynthesis in maize: 13CO2 labeling kinetics and cell type fractionation. Journal of Experimental Botany 68, pp. 283 - 298 (2017)
39.
Journal Article
Bledsoe, S. W.; Henry, C.; Griffiths, C. A.; Paul, M. J.; Feil, R.; Lunn, J. E.; Stitt, M.; Lagrimini, L. M.: The role of Tre6P and SnRK1 in maize early kernel development and events leading to stress-induced kernel abortion. BMC Plant Biology 17, 74 (2017)
40.
Journal Article
Fernandez, O.; Ishihara, H.; George, G. M.; Mengin, V.; Flis, A.; Sumner, D.; Arrivault, S.; Feil, R.; Lunn, J. E.; Zeeman, S. C. et al.; Smith, A. M.; Stitt, M.: Leaf Starch Turnover Occurs in Long Days and in Falling Light at the End of the Day. Plant Physiology 174 (4), pp. 2199 - 2212 (2017)
41.
Journal Article
Fichtner, F.; Barbier, F. F.; Feil, R.; Watanabe, M.; Annunziata, M. G.; Chabikwa, T. G.; Hoefgen, R.; Stitt, M.; Beveridge, C. A.; Lunn, J. E.: Trehalose 6-phosphate is involved in triggering axillary bud outgrowth in garden pea (Pisum sativum L.). The Plant Journal 92 (4), pp. 611 - 623 (2017)
42.
Journal Article
Fluegel, F.; Timm, S.; Arrivault, S.; Florian, A.; Stitt, M.; Fernie, A. R.; Bauwe, H.: The Photorespiratory Metabolite 2-Phosphoglycolate Regulates Photosynthesis and Starch Accumulation in Arabidopsis. The Plant Cell 29 (10), pp. 2537 - 2551 (2017)
43.
Journal Article
Fusari, C. M.; Kooke, R.; Lauxmann, M.; Annunziata, M. G.; Enke, B.; Höhne, M.; Krohn, N.; Becker, F. F. M.; Schlereth, A.; Sulpice, R. et al.; Stitt, M.; Keurentjes, J. J. B.: Genome-Wide Association Mapping Reveals That Specific and Pleiotropic Regulatory Mechanisms Fine-Tune Central Metabolism and Growth in Arabidopsis. The Plant Cell 29 (10), pp. 2349 - 2373 (2017)
44.
Journal Article
Graf, A.; Coman, D.; Uhrig, R.G.; Walsh, S.; Flis, A.; Stitt, M.; Gruissem, W.: Parallel analysis of arabidopsis circadian clock mutants reveals different scales of transcriptome and proteome regulation. Open Biology 7 (3), 160333 (2017)
45.
Journal Article
Ishihara, H.; Moraes, T. A.; Pyl, E. T.; Schulze, W. X.; Obata, T.; Scheffel, A.; Fernie, A. R.; Sulpice, R.; Stitt, M.: Growth rate correlates negatively with protein turnover in Arabidopsis accessions. The Plant Journal 91 (3), pp. 416 - 429 (2017)
46.
Journal Article
Ivakov, A.; Flis, A.; Apelt, F.; Fünfgeld, M. F.F.; Scherer, U.; Stitt, M.; Kragler, F.; Vissenberg, K.; Persson, S.; Suslov, D.: Cellulose Synthesis and Cell Expansion Are Regulated by Different Mechanisms in Growing Arabidopsis Hypocotyls. The Plant Cell 29 (6), pp. 1305 - 1315 (2017)
47.
Journal Article
Marshall-Colon, A.; Long, S. P.; Allen, D. K.; Allen, G.; Beard, D. A.; Benes, B.; von Caemmerer, S.; Christensen, A. J.; Cox, D. J.; Hart, J. C. et al.; Hirst, P. M.; Kannan, K.; Katz, D. S.; Lynch, J. P.; Millar, A. J.; Panneerselvam, B.; Price, N. D.; Prusinkiewicz, P.; Raila, D.; Shekar, R. G.; Shrivastava, S.; Shukla, D.; Srinivasan, V.; Stitt, M.; Turk, M. J.; Voit, E. O.; Wang, Y.; Yin, X.; Zhu, X.-G.: Crops In Silico: Generating Virtual Crops Using an Integrative and Multi-scale Modeling Platform. Frontiers in Plant Science 8, 786 (2017)
48.
Journal Article
Mengin, V.; Pyl, E. T.; Moraes, T. A.; Sulpice, R.; Krohn, N.; Encke, B.; Stitt, M.: Photosynthate Partitioning to Starch in Arabidopsis is Insensitive to Light Intensity but Sensitive to Photoperiod due to a Restriction on Growth in the Light in Short Photoperiods. Plant, Cell and Environment 40 (11-SI), pp. 2608 - 2627 (2017)
49.
Journal Article
Westhues, M.; Schrag, T. A.; Heuer, C.; Thaller, G.; Utz, H. F.; Schipprack, W.; Thiemann, A.; Seifert, F.; Ehret, A.; Schlereth, A. et al.; Stitt, M.; Nikoloski, Z.; Willmitzer, L.; Schoen, C. C.; Scholten, S.; Melchinger, A. E.: Omics-based hybrid prediction in maize. Theoretical and Applied Genetics 130 (9), pp. 1927 - 1939 (2017)
50.
Journal Article
Mackinder, L. C. M.; Meyer, M. T.; Mettler, T.; Chen, V. K.; Mitchell, M. C.; Caspari, O.; Rosenzweig, E. S. F.; Pallesen, L.; Reeves, G.; Itakura, A. et al.; Roth, R.; Sommer, F.; Geimer, S.; Mühlhaus, T.; Schroda, M.; Goodenough, U.; Stitt, M.; Griffiths, H.; Jonikas, M. C.: A repeat protein links Rubisco to form the eukaryotic carbon-concentrating organelle. Proceedings of the National Academy of Sciences of the United States of America 113 (21), pp. 5958 - 5963 (2016)
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