Journal Article (101)

51.
Journal Article
Jiao, C.; Sørensen, I.; Sun, X.; Sun, H.; Behar, H.; Alseekh, S.; Philippe, G.; Palacio Lopez, K.; Sun, L.; Reed, R. et al.; Jeon, S.; Kiyonami, R.; Zhang, S.; Fernie, A. R.; Brumer, H.; Domozych, D. S.; Fei, Z.; Rose, J. K.C.: The Penium margaritaceum Genome: Hallmarks of the Origins of Land Plants. Cell 181 (5), pp. 1097 - 1111.e12 (2020)
52.
Journal Article
Kanojia, A.; Gupta, S.; Benina, M.; Fernie, A. R.; Mueller-Roeber, B.; Gechev, T.; Dijkwel, P. P.: Developmentally controlled changes during Arabidopsis leaf development indicate causes for loss of stress tolerance with age. Journal of Experimental Botany 71 (20), pp. 6340 - 6354 (2020)
53.
Journal Article
Karagiannis, E.; Michailidis, M.; Tanou, G.; Scossa, F.; Sarrou, E.; Stamatakis, G.; Samiotaki, M.; Martens, S.; Fernie, A. R.; Molassiotis, A.: Decoding altitude-activated regulatory mechanisms occurring during apple peel ripening. Horticulture Research 7 (1), 120 (2020)
54.
Journal Article
Karagiannis, E.; Tanou, G.; Scossa, F.; Samiotaki, M.; Michailidis, M.; Manioudaki, M.; Laurens, F.; Job, D.; Fernie, A. R.; Orsel, M. et al.; Molassiotis, A.: Systems-Based Approaches to Unravel Networks and Individual Elements Involved in Apple Superficial Scald. Frontiers in Plant Science 11, 8 (2020)
55.
Journal Article
Kleine, T.; Nägele, T.; Neuhaus, H. E.; Schmitz-Linneweber, C.; Fernie, A. R.; Geigenberger, P.; Grimm, B.; Kaufmann, K.; Klipp, E.; Meurer, J. et al.; Möhlmann, T.; Mühlhaus, T.; Naranjo, B.; Nickelsen, J.; Richter, A.; Ruwe, H.; Schroda, M.; Schwenkert, S.; Trentmann, O.; Willmund, F.; Zoschke, R.; Leister, D.: Acclimation in plants – the Green Hub consortium. The Plant Journal 106 (1), pp. 23 - 40 (2020)
56.
Journal Article
Kuhalskaya, A.; Wijesingha Ahchige, M.; de Souza, L. P.; Vallarino, J. G.; Brotman, Y.; Alseekh, S.: Network analysis provides insight into tomato lipid metabolism. Metabolites 10 (4), 152 (2020)
57.
Journal Article
Li, Y.; Chen, Y.; Zhou, L.; You, S.; Deng, H.; Chen, Y.; Alseekh, S.; Yuan, Y.; Fu, R.; Zhang, Z. et al.; Su, D.; Fernie, A. R.; Bouzayen, M.; Ma, T.; Liu, M.; Zhang, Y.: MicroTom Metabolic Network: Rewiring Tomato Metabolic Regulatory Network throughout the Growth Cycle. Molecular Plant 13 (8), pp. 1203 - 1218 (2020)
58.
Journal Article
Liu, H.; Jian, L.; Xu, J.; Zhang, Q.; Zhang, M.; Jin, M.; Peng, Y.; Yan, J.; Han, B.; Liu, J. et al.; Gao, F.; Liu, X.; Huang, L.; Wei, W.; Ding, Y.; Yang, X.; Li, Z.; Zhang, M.; Sun, J.; Bai, M.; Song, W.; Chen, H.; Sun, X.; Li, W.; Lu, Y.; Liu, Y.; Zhao, J.; Qian, Y.; Jackson, D.; Fernie, A. R.; Yan, J.: High-Throughput CRISPR/Cas9 Mutagenesis Streamlines Trait Gene Identification in Maize. The Plant Cell 32 (5), pp. 1397 - 1413 (2020)
59.
Journal Article
Llorente, B.; Torres-Montilla, S.; Morelli, L.; Florez-Sarasa, I.; Matus, J. T.; Ezquerro, M.; D´Andrea, L.; Houhou, F.; Majer, E.; Pico, B. et al.; Cebolla, J.; Troncoso, A.; Fernie, A. R.; Daros, J.-A.; Rodriguez-Concepcion, M.: Synthetic conversion of leaf chloroplasts into carotenoid-rich plastids reveals mechanistic basis of natural chromoplast development. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 117 (35), pp. 21796 - 21803 (2020)
60.
Journal Article
McQuinn, R.P.; Gapper, N.E.; Gray, A.G.; Zhong, S.; Tohge, T.; Fei, Z.; Fernie, A. R.; Giovannoni, J.J.: Manipulation of ZDS in tomato exposes carotenoid- and ABA-specific effects on fruit development and ripening. Plant Biotechnology Journal 18 (11), pp. 2210 - 2224 (2020)
61.
Journal Article
Medeiros, D.B.; Barros, J. A.S.; Fernie, A. R.; Araújo, W. L.: Eating Away at ROS to Regulate Stomatal Opening. Trends in Plant Science 25 (3), pp. 220 - 223 (2020)
62.
Journal Article
Obata, T.; Klemens, P.A.W.; Rosado-Souza, L.; Schlereth, A.; Gisel, A.; Stavolone, L.; Zierer, W.; Morales, N.; Mueller, L.A.; Zeeman, S.C. et al.; Ludewig, F.; Stitt, M.; Sonnewald, U.; Neuhaus, H.E.; Fernie, A. R.: Metabolic profiles of six African cultivars of cassava (Manihot esculenta Crantz) highlight bottlenecks of root yield. The Plant Journal 102 (6), pp. 1202 - 1219 (2020)
63.
Journal Article
Omidbakhshfard, M. A.; Sujeeth, N.; Gupta, S.; Omranian, N.; Guinan, K.J.; Brotman, Y.; Nikoloski, Z.; Fernie, A. R.; Mueller-Roeber, B.; Gechev, T.S.: A Biostimulant Obtained from the Seaweed Ascophyllum nodosum Protects Arabidopsis thaliana from Severe Oxidative Stress. International Journal of Molecular Sciences 21 (2), 474 (2020)
64.
Journal Article
Osorio, S.; Carneiro, R. T.; Lytovchenko, A.; McQuinn, R.; Sorensen, I.; Vallarino, J. G.; Giovannoni, J. J.; Fernie, A. R.; Rose, J. K. C.: Genetic and metabolic effects of ripening mutations and vine detachment on tomato fruit quality. Plant Biotechnology Journal 18 (1), pp. 106 - 118 (2020)
65.
Journal Article
Parween, S.; Anonuevo, J.J.; Butardo, V.M.; Misra, G.; Anacleto, R.; Llorente, C.; Kosik, O.; Romero, M.V.; Bandonill, E.H.; Mendioro, M.S. et al.; Lovegrove, A.; Fernie, A. R.; Brotman, Y.; Sreenivasulu, N.: Balancing the double-edged sword effect of increased resistant starch content and its impact on rice texture: its genetics and molecular physiological mechanisms. Plant Biotechnology Journal 18 (8), pp. 1763 - 1777 (2020)
66.
Journal Article
Pott, D. M.; de Abreu e Lima, F.; Soria, C.; Willmitzer, L.; Fernie, A. R.; Nikoloski, Z.; Osorio, S.; Vallarino, J. G.: Metabolic reconfiguration of strawberry physiology in response to postharvest practices. Food Chemistry 321, 126747 (2020)
67.
Journal Article
Pott, D. M.; Vallarino, J. G.; Osorio, S.: Metabolite Changes during Postharvest Storage: Effects on Fruit Quality Traits. Metabolites (accepted)
68.
Journal Article
Qiu, H.; Zhu, X.; Wan, H.; Xu, L.; Zhang, Q.; Hou, P.; Fan, Z.; Lyu, Y.; Ni, D.; Usadel, B. et al.; Fernie, A. R.; Wen, W.: Parallel Metabolomic and Transcriptomic Analysis Reveals Key Factors for Quality Improvement of Tea Plants. Journal of Agricultural and Food Chemistry 68 (19), pp. 5483 - 5495 (2020)
69.
Journal Article
Richter, A. S.; Tohge, T.; Fernie, A. R.; Grimm, B.: The genomes uncoupled -dependent signalling pathway coordinates plastid biogenesis with the synthesis of anthocyanins. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 375 (1801), 20190403 (2020)
70.
Journal Article
Rödiger, A.; Galonska, J.; Bergner, E.; Agne, B.; Helm, S.; Alseekh, S.; Fernie, A. R.; Thieme, D.; Hoehenwarter, W.; Hause, G. et al.; Pfannschmidt, T.; Baginsky, S.: Working day and night: Plastid casein kinase 2 catalyses phosphorylation of proteins with diverse functions in light- and dark-adapted plastids. The Plant Journal 104 (2), pp. 546 - 558 (2020)
71.
Journal Article
Rosa-Téllez, S.; Anoman, A.D.; Alcántara-Enguídanos, A.; Garza-Aguirre, R.A.; Alseekh, S.; Ros, R.: PGDH family genes differentially affect Arabidopsis tolerance to salt stress. Plant Science 290, 110284 (2020)
72.
Journal Article
Sakai, Y.; Koyama-Honda, I.; Tachikawa, M.; Knorr, R. L.; Mizushima, N.: Modeling Membrane Morphological Change during Autophagosome Formation. iScience 23 (9), 10146 (2020)
73.
Journal Article
Salem, M. A.; Radwan, R. A.; Mostafa, E. S.; Alseekh, S.; Fernie, A. R.; Ezzat, S. M.: Using an UPLC/MS-based untargeted metabolomics approach for assessing the antioxidant capacity and anti-aging potential of selected herbs. RSC Advances 10, pp. 31511 - 31524 (2020)
74.
Journal Article
Salem, M.A.; Yoshida, T.; de Souza, L. P.; Alseekh, S.; Bajdzienko, K.; Fernie, A. R.; Giavalisco, P.: An improved extraction method enables the comprehensive analysis of lipids, proteins, metabolites and phytohormones from a single sample of leaf tissue under water-deficit stress. The Plant Journal 103 (4), pp. 1614 - 1632 (2020)
75.
Journal Article
Scossa, F.; Fernie, A. R.: The evolution of metabolism: How to test evolutionary hypotheses at the genomic level. Computational and Structural Biotechnology Journal 18, pp. 482 - 500 (2020)
76.
Journal Article
Shameer, S.; Vallarino, J. G.; Fernie, A. R.; Ratcliffe, R. G.; Sweetlove, L. J.: Flux balance analysis of metabolism during growth by osmotic cell expansion and its application to tomato fruits. The Plant Journal 103 (1), pp. 68 - 82 (2020)
77.
Journal Article
Shapiguzov, A.; Nikkanen, L.; Fitzpatrick, D.; Vainonen, J. P.; Gossens, R.; Alseekh, S.; Aarabi, F.; Tiwari, A.; Blokhina, O.; Panzarová, K. et al.; Benedikty, Z.; Tyystjärvi, E.; Fernie, A. R.; Trtílek, M.; Aro, E.-M.; Rintamäki, E.; Kangasjärvi, J.: Dissecting the interaction of photosynthetic electron transfer with mitochondrial signalling and hypoxic response in the Arabidopsis rcd1 mutant. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 375 (1801), 20190413 (2020)
78.
Journal Article
Shi, T.; Zhu, A.; Jia, J.; Hu, X.; Chen, J.; Liu, W.; Ren, X.; Sun, D.; Fernie, A. R.; Cui, F. et al.; Chen, W.: Metabolomics analysis and metabolite-agronomic trait associations using kernels of wheat (Triticum aestivum) recombinant inbred lines. The Plant Journal 103 (1), pp. 279 - 292 (2020)
79.
Journal Article
Sonnewald, U.; Fernie, A. R.; Gruissem, W.; Schläpfer, P.; Anjanappa, R. B.; Chang, S.-H.; Ludewig, F.; Rascher, U.; Muller, O.; van Doorn, A. M. et al.; Rabbi, I. Y.; Zierer, W.: The Cassava Source-Sink project: Opportunities and challenges for crop improvement by metabolic engineering. The Plant Journal 103 (5), pp. 1655 - 1665 (2020)
80.
Journal Article
Sujeeth, N.; Mehterov, N.; Gupta, S.; Qureshi, M. K.; Fischer, A.; Proost, S.; Omidbakhshfard, M. A.; Obata, T.; Benina, M.; Staykov, N. et al.; Balazadeh, S.; Walther, D.; Fernie, A. R.; Mueller-Roeber, B.; Hille, J.; Gechev, T. S.: A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana. Cellular and Molecular Life Sciences 77, pp. 705 - 718 (2020)
81.
Journal Article
Suzuki, M.; Wu, S.; Mimura, M.; Alseekh, S.; Fernie, A. R.; Hanson, A. D.; McCarty, D. R.: Construction and applications of a B vitamin genetic resource for investigation of vitamin dependent metabolism in maize. The Plant Journal 101 (2), pp. 442 - 454 (2020)
82.
Journal Article
Thole, V.; Vain, P.; Yang, R.-Y.; Almeida Barros da Silva, J.; Enfissi, E.M.A.; Nogueira, M.; Price, E.J.; Alseekh, S.; Fernie, A. R.; Fraser, P.D. et al.; Hanson, P.; Martin, C.: Analysis of Tomato Post-Harvest Properties: Fruit Color, Shelf Life, and Fungal Susceptibility. Current protocols in plant biology 5 (2), e20108 (2020)
83.
Journal Article
Tohge, T.; Scossa, F.; Wendenburg, R.; Frasse, P.; Balbo, I.; Watanabe, M.; Alseekh, S.; Jadha, S. S.; Delfin, J. C.; Lohse, M. et al.; Giavalisco, P.; Usadel, B.; Zhang, Y.; Luo, J.; Bouzayen, M.; Fernie, A. R.: Exploiting natural variation in tomato to define pathway structure and metabolic regulation of fruit polyphenolics in the lycopersicum complex. Molecular Plant 13 (7), pp. 1027 - 1046 (2020)
84.
Journal Article
Vallarino, J. G.; Kubiszewski-Jakubiak, S.; Ruf, S.; Rößner, M.; Timm, S.; Bauwe, H.; Carrari, F.; Rentsch, D.; Bock, R.; Sweetlove, L.J. et al.; Fernie, A. R.: Multi-gene metabolic engineering of tomato plants results in increased fruit yield up to 23. Scientific Reports 10 (1), 17219 (2020)
85.
Journal Article
Vallarino, J.G.; Merchante, C.; Sánchez-Sevilla, J.F.; de Luis Balaguer, M.A.; Pott, D.M.; Ariza, M.T.; Casañal, A.; Posé, D.; Vioque, A.; Amaya, I. et al.; Willmitzer, L.; Solano, R.; Sozzani, R.; Fernie, A. R.; Botella, M.A.; Giovannoni, J.J.; Valpuesta, V.; Osorio, S.: Characterizing the involvement of FaMADS9 in the regulation of strawberry fruit receptacle development. Plant Biotechnology Journal 18 (4), pp. 929 - 943 (2020)
86.
Journal Article
Vergara-Diaz, O.; Vatter, T.; Kefauver, S. C.; Obata, T.; Fernie, A. R.; Araus, J. L.: Assessing durum wheat ear and leaf metabolomes in the field through hyperspectral data. The Plant Journal 102 (3), pp. 615 - 630 (2020)
87.
Journal Article
Vergara-Diaz, O.; Vatter, T.; Vicente, R.; Obata, T.; Nieto-Taladriz, M.T.; Aparicio, N.; Carlisle Kefauver, S.; Fernie, A. R.; Araus, J.L.: Metabolome Profiling Supports the Key Role of the Spike in Wheat Yield Performance. Cells 9 (4), 1025 (2020)
88.
Journal Article
Wan, H.; Liu, H.; Zhang, J.; Lyu, Y.; Li, Z.; He, Y.; Zhang, X.; Deng, X.; Brotman, Y.; Fernie, A. R. et al.; Cheng, Y.; Wen, W.: Lipidomic and transcriptomic analysis reveals reallocation of carbon flux from cuticular wax into plastid membrane lipids in a glossy “Newhall” navel orange mutant. Horticulture Research 7, 41 (2020)
89.
Journal Article
Watanabe, M.; Ueda, Y.; Kondo, K.; Ishikawa, S.; Tohge, T.; Burgos, A.; Brotman, Y.; Fernie, A. R.; Walther, D.; Hoefgen, R. et al.; Wissuwa, M.: Metabolomic markers and physiological adaptations for high phosphate utilization efficiency in rice. Plant, Cell and Environment 43 (9), pp. 2066 - 2079 (2020)
90.
Journal Article
Wen, W.; Alseekh, S.; Fernie, A. R.: Conservation and diversification of flavonoid metabolism in the plant kingdom. Current Opinion in Plant Biology 55, pp. 100 - 108 (2020)
91.
Journal Article
Zhan, C.; Lei, L.; Liu, Z.; Zhou, S.; Yang, C.; Zhu, X.; Guo, H.; Zhang, F.; Peng, M.; Zhang, M. et al.; Li, Y.; Yang, Z.; Sun, Y.; Shi, Y.; Li, K.; Liu, L.; Shen, S.; Wang, X.; Shao, J.; Jing, X.; Wang, Z.; Li, Y.; Czechowski, T.; Hasegewa, M.; Graham, I.; Tohge, T.; Qu, L.; Liu, X.; Fernie, A. R.; Chen, L.-L.; Yuan, M.; Luo, J.: Selection of a subspecies-specific diterpene gene cluster implicated in rice disease resistance. Nature Plants 6 (12), pp. 1447 - 1454 (2020)
92.
Journal Article
Zhan, C.; Lei, L.; Liu, Z.; Zhou, S.; Yang, C.; Zhu, X.; Guo, H.; Zhang, F.; Peng, M.; Zhang, M. et al.; Li, Y.; Yang, Z.; Sun, Y.; Shi, Y.; Li, K.; Liu, L.; Shen, S.; Wang, X.; Shao, J.; Jing, X.; Wang, Z.; Li, Y.; Czechowski, T.; Hasegawa, M.; Graham, I.; Tohge, T.; Qu, L.; Liu, X.; Fernie, A. R.; Chen, L.-L.; Yuan, M.; Luo, J.: Author Correction: Selection of a subspecies-specific diterpene gene cluster implicated in rice disease resistance (Nature Plants, (2020), 6, 12, (1447-1454), 10.1038/s41477-020-00816-7). Nature Plants (accepted)
93.
Journal Article
Zhang, W.; Alseekh, S.; Zhu, X.; Zhang, Q.; Fernie, A. R.; Kuang, H.; Wen, W.: Dissection of the domestication-shaped genetic architecture of lettuce primary metabolism. The Plant Journal 104 (3), pp. 613 - 630 (2020)
94.
Journal Article
Zhang, W.; Zhang, Y.; Qiu, H.; Guo, Y.; Wan, H.; Zhang, X.; Scossa, F.; Alseekh, S.; Zhang, Q.; Wang, P. et al.; Xu, L.; Schmidt, M.H.-W.; Jia, X.; Li, D.; Zhu, A.; Guo, F.; Chen, W.; Ni, D.; Usadel, B.; Fernie, A. R.; Wen, W.: Genome assembly of wild tea tree DASZ reveals pedigree and selection history of tea varieties. Nature Communications 11 (1), 3719 (2020)
95.
Journal Article
Zhang, Y.; Chen, M.; Siemiatkowska, B.; Toleco, M.R.; Jing, Y.; Strotmann, V.; Zhang, J.; Stahl, Y.; Fernie, A. R.: A Highly Efficient Agrobacterium-Mediated Method for Transient Gene Expression and Functional Studies in Multiple Plant Species. Plant Communications 1 (5), 100028 (2020)
96.
Journal Article
Zhang, Y.; Fernie, A. R.: On the Detection and Functional Significance of the Protein–Protein Interactions of Mitochondrial Transport Proteins. Biomolecules 10 (8), 1107 (2020)
97.
Journal Article
Zhang, Y.; Fernie, A. R.: Resolving the metabolon: is the proof in the metabolite? EMBO Reports 21 (8), e50774 (2020)
98.
Journal Article
Zhang, Y.; Krahnert, I.; Bolze, A.; Gibon, Y.; Fernie, A. R.: Adenine Nucleotide and Nicotinamide Adenine Dinucleotide Measurements in Plants. Current Protocols in Plant Biology 5 (3), e20115 (2020)
99.
Journal Article
Zhang, Y.; Sampathkumar, A.; Kerbler, S.M.-L.; Swart, C.; Hille, C.; Seerangan, K.; Graf, A.; Sweetlove, L.; Fernie, A. R.: A moonlighting role for enzymes of glycolysis in the co-localization of mitochondria and chloroplasts. Nature Communications 11 (1), 4509 (2020)
100.
Journal Article
Zhang, Y.; Skirycz, A.; Fernie, A. R.: An Abundance and Interaction Encyclopedia of Plant Protein Function. Trends in Plant Science 25 (7), pp. 627 - 630 (2020)
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