Naumann, M.; Hubberten, H. M.; Watanabe, M.; Hänsch, R.; Schöttler, M. A.; Hoefgen, R.: Sulfite Reductase Co-suppression in Tobacco Reveals Detoxification Mechanisms and Downstream Responses Comparable to Sulfate Starvation. Frontiers in Plant Science 9, 1423 (2018)

Pinsorn, P.; Oikawa, A.; Watanabe, M.; Sasaki, R.; Ngamchuachit, P.; Hoefgen, R.; Saito, K.; Sirikantaramas, S.: Metabolic variation in the pulps of two durian cultivars: Unraveling the metabolites that contribute to the flavor. Food Chemistry 268, pp. 118 - 125 (2018)

Salem, M.A.; Li, Y.; Bajdzienko, K.; Fisahn, J.; Watanabe, M.; Hoefgen, R.; Schöttler, M. A.; Giavalisco, P.: RAPTOR controls developmental growth transitions by altering the hormonal and metabolic balance. Plant Physiology 177 (2), pp. 565 - 593 (2018)

Watanabe, M.; Netzer, F.; Tohge, T.; Orf, I.; Brotman, Y.; Dubbert, D.; Fernie, A. R.; Rennenberg, H.; Hoefgen, R.; Herschbach, C.: Metabolome and Lipidome Profiles of Populus x canescens Twig Tissues During Annual Growth Show Phospholipid- Linked Storage and Mobilization of C, N, and S. Frontiers in Plant Science 9, 1292 (2018)

Watanabe, M.; Tohge, T.; Fernie, A. R.; Hoefgen, R.: The Effect of Single and Multiple SERAT Mutants on Serine and Sulfur Metabolism. Frontiers in Plant Science 9, 702 (2018)

Whitcomb, S. J.; Nguyen, H. C.; Brückner, F.; Hesse, H.; Hoefgen, R.: CYSTATHIONINE GAMMA-SYNTHASE activity in rice is developmentally regulated and strongly correlated with sulfate. Plant Science 270, pp. 234 - 244 (2018)

Fichtner, F.; Barbier, F. F.; Feil, R.; Watanabe, M.; Annunziata, M. G.; Chabikwa, T. G.; Hoefgen, R.; Stitt, M.; Beveridge, C. A.; Lunn, J. E.: Trehalose 6-phosphate is involved in triggering axillary bud outgrowth in garden pea (Pisum sativum L.). The Plant Journal 92 (4), pp. 611 - 623 (2017)

Heyneke, E.; Watanabe, M.; Erban, A.; Duan, G. Y.; Buchner, P.; Walther, D.; Kopka, J.; Hawkesford, M. J.; Hoefgen, R.: Characterization of the Wheat Leaf Metabolome during Grain Filling and under Varied N-Supply. Frontiers in Plant Science 8, 2048 (2017)

Ishiga, Y.; Watanabe, M.; Ishiga, T.; Tohge, T.; Matsuura, T.; Ikeda , Y.; Hoefgen, R.; Fernie, A. R.; Mysore, K.S.: The SAL-PAP Chioroplast Retrograde Pathway Contributes to Plant Immunity by Regulating Glucosinolate Pathway and Phytohormone Signaling. Molecular Plant-Microbe Interactions 30 (10), pp. 829 - 841 (2017)

Ploetner, B.; Nurmi, M.; Fischer, A.; Watanabe, M.; Schneeberger, K.; Holm, S.; Vaid, N.; Schöttler, M. A.; Walther, D.; Hoefgen, R. et al.; Weigel, D.; Laitinen, R.: Chlorosis caused by two recessively interacting genes reveals a role of RNA helicase in hybrid breakdown in Arabidopsis thaliana. The Plant Journal 91 (2), pp. 251 - 262 (2017)

Prodhan, M. A.; Jost, R.; Watanabe, M.; Hoefgen, R.; Lambers, H.; Finnegan, P. M.: Tight control of sulfur assimilation: an adaptive mechanism for a plant from a severely phosphorus-impoverished habitat. New Phytologist 215 (3), pp. 1068 - 1079 (2017)

Moschen, S.; Bengoa Luoni, S.; Di Rienzo, J. A.; del Pilar Caro, M.; Tohge, T.; Watanabe, M.; Hollmann, J.; Gonzalez, S.; Rivarola, M.; Garcia-Garcia, F. et al.; Dopazo, J.; Esteban Hopp, H.; Hoefgen, R.; Fernie, A. R.; Paniego, N.; Fernandez, P.; Heinz, R. A.: Integrating transcriptomic and metabolomic analysis to understand natural leaf senescence in sunflower. Plant Biotechnology Journal 14 (2), pp. 719 - 734 (2016)

Aarabi, F.; Kusajima, M.; Tohge, T.; Konishi, T.; Gigolashvili, T.; Takamune, M.; Sasazaki, Y.; Watanabe, M.; Nakashita, H.; Fernie, A. R. et al.; Saito, K.; Takahashi, H.; Hubberten, H. M.; Hoefgen, R.; Maruyama-Nakashita, A.: Sulfur deficiency–induced repressor proteins optimize glucosinolate biosynthesis in plants. Science Advances 2 (10), e1601087 (2016)

Figueroa, C. M.; Feil, R.; Ishihara, H.; Watanabe, M.; Kolling, K.; Krause, U.; Höhne, M.; Encke, B.; Plaxton, W. C.; Zeeman, S. C. et al.; Li, Z.; Schulze, W. X.; Hoefgen, R.; Stitt, M.; Lunn, J. E.: Trehalose 6-phosphate coordinates organic and amino acid metabolism with carbon availability. The Plant Journal 85 (3), pp. 410 - 423 (2016)

Prodhan, M. A.; Jost, R.; Watanabe, M.; Hoefgen, R.; Lambers, H.; Finnegan, P. M.: Tight control of nitrate acquisition in a plant species that evolved in an extremely phosphorus-impoverished environment. Plant, Cell and Environment 39 (12), pp. 2754 - 2761 (2016)

Tohge, T.; Wendenburg, R.; Ishihara, H.; Nakabayashi, R.; Watanabe, M.; Sulpice, R.; Hoefgen, R.; Takayama, H.; Saito, K.; Stitt, M. et al.; Fernie, A. R.: Characterization of a recently evolved flavonol-phenylacyltransferase gene provides signatures of natural light selection in Brassicaceae. Nature Communications 7, 12399 (2016)

Vicente, R.; Pérez, P.; Martínez-Carrasco, R.; Feil, R.; Lunn, J. E.; Watanabe, M.; Arrivault, S.; Stitt, M.; Hoefgen, R.; Morcuende, R.: Metabolic and Transcriptional Analysis of Durum Wheat Responses to Elevated CO2 at Low and High Nitrate Supply. Plant Cell Physiology 57 (10), pp. 2133 - 2146 (2016)

Bielecka, M.; Watanabe, M.; Morcuende, R.; Scheible, W.-R.; Hawkesford, M. J.; Hesse, H.; Hoefgen, R.: Transcriptome and metabolome analysis of plant sulphate starvation and resupply provides novel information on transcriptional regulation of metabolism associated with sulphur, nitrogen and phosphorus nutritional responses in Arabidopsis. Frontiers in Plant Science 5, 805 (2015)

Hubberten, H. M.; Sieh, D.; Zoeller, D.; Hoefgen, R.; Krajinski, F.: Medicago truncatula Mtha1-2 mutants loose metabolic responses to mycorrhizal colonization. Plant Signaling & Behavior 10 (6), e989025 (2015)

Zuchi, S.; Watanabe, M.; Hubberten, H. M.; Bromke, M. A.; Osorio, S.; Fernie, A. R.; Celletti, S.; Paolacci, A. R.; Catarcione, G.; Ciaffi, M. et al.; Hoefgen, R.; Astolfi, S.: The Interplay between Sulfur and Iron Nutrition in Tomato. Plant Physiology 169 (4), pp. 2624 - 2639 (2015)

Weits, D. A.; Giuntoli, B.; Kosmacz, M.; Parlanti, S.; Hubberten, H. M.; Riegler, H.; Hoefgen, R.; Perata, P.; van Dongen, J. T.; Licausi, F.: Plant cysteine oxidases control the oxygen-dependent branch of the N-end-rule pathway. Nature Communications 5, 3425 (2014)

Schmidt, R.; Schippers, J. H. M.; Mieulet, D.; Watanabe, M.; Hoefgen, R.; Guiderdoni, E.; Mueller-Roeber, B.: SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice. Molecular Plant 7 (2), pp. 404 - 421 (2014)

Weissgerber, T.; Watanabe, M.; Hoefgen, R.; Dahl, C.: Metabolomic profiling of the purple sulfur bacterium Allochromatium vinosum during growth on different reduced sulfur compounds and malate. Metabolomics 10 (6), pp. 1094 - 1112 (2014)

Schmidt, R.; Mieulet, D.; Hubberten, H. M.; Obata, T.; Hoefgen, R.; Fernie, A. R.; Fisahn, J.; Segundo, B. S.; Guiderdoni, E.; Schippers, J. H. M. et al.; Mueller-Roeber, B.: SALT-RESPONSIVE ERF1 Regulates Reactive Oxygen Species-Dependent Signaling during the Initial Response to Salt Stress in Rice. The Plant Cell 25 (6), pp. 2115 - 2131 (2013)

Bromke, M. A.; Hoefgen, R.; Hesse, H.: Phylogenetic aspects of the sulfate assimilation genes from Thalassiosira pseudonana. Amino Acids 44 (5), pp. 1253 - 1265 (2013)

Sieh, D.; Watanabe, M.; Devers, E. A.; Brueckner, F.; Hoefgen, R.; Krajinski, F.: The arbuscular mycorrhizal symbiosis influences sulfur starvation responses of Medicago truncatula. New Phytologist 197 (2), pp. 606 - 616 (2013)

Tahir, J.; Watanabe, M.; Jing, H. C.; Hunter, D. A.; Tohge, T.; Nunes-Nesi, A.; Brotman, Y.; Fernie, A. R.; Hoefgen, R.; Dijkwel, P. P.: Activation of R-mediated innate immunity and disease susceptibility is affected by mutations in a cytosolic O-acetylserine (thiol) lyase in Arabidopsis. The Plant Journal 73 (1), pp. 118 - 130 (2013)

Tohge, T.; Watanabe, M.; Hoefgen, R.; Fernie, A. R.: Shikimate and phenylalanine biosynthesis in the green lineage. Frontiers in Plant Science 4, p. 62 (2013)

Watanabe, M.; Balazadeh, S.; Tohge, T.; Erban, A.; Giavalisco, P.; Kopka, J.; Mueller-Roeber, B.; Fernie, A. R.; Hoefgen, R.: Comprehensive dissection of spatio-temporal metabolic shifts in primary, secondary and lipid metabolism during developmental senescence in Arabidopsis thaliana. Plant Physiology 162 (3), pp. 1290 - 1310 (2013)

Hubberten, H. M.; Drozd, A.; Tran, B. V.; Hesse, H.; Hoefgen, R.: Local and systemic regulation of sulfur homeostasis in roots of Arabidopsis thaliana. Plant Journal 72 (4), pp. 625 - 635 (2012)