Publications of T. Tohge

Pham, P. A.; Wahl, V.; Tohge, T.; de Souza, L. P.; Zhang, Y.; Do, P. T.; Olas, J. J.; Stitt, M.; Araujo, W. L.; Fernie, A. R.: Analysis of knockout mutants reveals non-redundant functions of poly(ADP-ribose)polymerase isoforms in Arabidopsis. Plant Molecular Biology 89 (4-5), pp. 319 - 338 (2015)

Sade, D.; Shriki, O.; Cuadros-Inostroza, A. C.; Tohge, T.; Semel, Y.; Haviv, Y.; Willmitzer, L.; Fernie, A. R.; Czosnek, H.; Brotman, Y.: Comparative metabolomics and transcriptomics of plant response to Tomato yellow leaf curl virus infection in resistant and susceptible tomato cultivars. Metabolomics 11 (1), pp. 81 - 97 (2015)

Tohge, T.; Scossa, F.; Fernie, A. R.: Integrative Approaches to Enhance Understanding of Plant Metabolic Pathway Structure and Regulation. Plant Physiology 169 (3), pp. 1499 - 1511 (2015)

Tohge, T.; Zhang, Y.; Peterek, S.; Matros, A.; Rallapalli, G.; Tandron, Y. A.; Butelli, E.; Kallam, K.; Hertkorn, N.; Mock, H.-P. et al.; Martin, C.; Fernie, A. R.: Ectopic expression of snapdragon transcription factors facilitates the identification of genes encoding enzymes of anthocyanin decoration in tomato. The Plant Journal 83 (4), pp. 686 - 704 (2015)

Wang, T.; Tohge, T.; Ivakov, A.; Mueller-Roeber, B.; Fernie, A. R.; Mutwil, M.; Schippers, J. H. M.; Persson, S.: Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiology 169 (2), pp. 1027 - 1041 (2015)

Zhang, Y.; Butelli, E.; Alseekh, S.; Tohge, T.; Rallapalli, G.; Luo, J.; Kawar, P. G.; Hill, L.; Santino, A.; Fernie, A. R. et al.; Martin, C.: Multi-level engineering facilitates the production of phenylpropanoid compounds in tomato. Nature communications 6, 8635 (2015)

Bolger, A. M.; Scossa, F.; Bolger, A. M.; Lanz, C.; Maumus, F.; Tohge, T.; Quesneville, H.; Alseekh, S.; Sorensen, I.; Lichtenstein, G. et al.; Fich, E. A.; Conte, M.; Keller, H.; Schneeberger, K.; Schwacke, R.; Ofner, I.; Vrebalov, J.; Xu, Y.; Osorio, S.; Aflitos, S. A.; Schijlen, E.; Jimenez-Gomez, J. M.; Ryngajllo, M.; Kimura, S.; Kumar, R.; Koenig, D.; Headland, L. R.; Maloof, J. N.; Sinha, N.; van Ham, R. C. H. J.; Lankhorst, R. K.; Mao, L.; Vogel, A.; Arsova, B.; Panstruga, R.; Fei, Z.; Rose, J. K. C.; Zamir, D.; Carrari, F. F.; Giovannoni, J. J.; Weigel, D.; Usadel, B.; Fernie, A. R.: The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Genetics 46 (9), pp. 1034 - 1038 (2014)

Schwahn, K.; de Souza, L. P.; Fernie, A. R.; Tohge, T.: Metabolomics-assisted refinement of the pathways of steroidal glycoalkaloid biosynthesis in the tomato clade. Journal of Integrative Plant Biology 56 (9), pp. 864 - 875 (2014)

Fukushima, A.; Kusano, M.; Mejia, R. F.; Iwasa, M.; Kobayashi, M.; Hayashi, N.; Watanabe-Takahashi, A.; Narisawa, T.; Tohge, T.; Hur, M. et al.; Wurtele, E. S.; Nikolau, B. J.; Saito, K.: Metabolomic Characterization of Knockout Mutants in Arabidopsis: Development of a Metabolite Profiling Database for Knockout Mutants in Arabidopsis. Plant Physiology 165 (3), pp. 948 - 961 (2014)

Martins, S. C. V.; Araújo, W. L.; Tohge, T.; Fernie, A. R.; DaMatta, F. M.: In High-Light-Acclimated Coffee Plants the Metabolic Machinery Is Adjusted to Avoid Oxidative Stress Rather than to Benefit from Extra Light Enhancement in Photosynthetic Yield. PLoS One 9 (4), e94862 (2014)

Araujo, W. L.; Tohge, T.; Nunes-Nesi, A.; Obata, T.; Fernie, A. R.: Analysis of Kinetic Labeling of Amino Acids and Organic Acids by GC-MS. Methods in molecular biology 1090, pp. 107 - 119 (2014)

Florian, A.; Nikoloski, Z.; Sulpice, R.; Timm, S.; Araujo, W. L.; Tohge, T.; Bauwe, H.; Fernie, A. R.: Analysis of Short-Term Metabolic Alterations in Arabidopsis Following Changes in the Prevailing Environmental Conditions. Molecular Plant 7 (5 - SI), pp. 893 - 911 (2014)

Florian, A.; Timm, S.; Nikoloski, Z.; Tohge, T.; Bauwe, H.; Araujo, W. L.; Fernie, A. R.: Analysis of metabolic alterations in Arabidopsis following changes in the carbon dioxide and oxygen partial pressures. Journal of Integrative Plant Biology 56 (9 - SI), pp. 941 - 959 (2014)

Heise, R.; Arrivault, S.; Szecowka, M.; Tohge, T.; Nunes-Nesi, A.; Stitt, M.; Nikoloski, Z.; Fernie, A. R.: Flux profiling of photosynthetic carbon metabolism in intact plants. Nature Protocols 9 (8), pp. 1803 - 1824 (2014)

Hu, C.; Shi, J.; Quan, S.; Cui, B.; Kleessen, S.; Nikoloski, Z.; Tohge, T.; Alexander, D.; Guo, L.; Lin, H. et al.; Wang, J.; Cui, X.; Rao, J.; Luo, Q.; Zhao, X.; Fernie, A. R.; Zhang, D.: Metabolic variation between japonica and indica rice cultivars as revealed by non-targeted metabolomics. Scientific Reports 4, 5067 (2014)

Klie, S.; Osorio, S.; Tohge, T.; Drincovich, M. F.; Fait, A.; Giovannoni, J. J.; Fernie, A. R.; Nikoloski, Z.: Conserved Changes in the Dynamics of Metabolic Processes during Fruit Development and Ripening across Species. Plant Physiology 164 (1), pp. 55 - 68 (2014)

Lohse, M.; Nagel, A.; Herter, T.; May, P.; Schroda, M.; Zrenner, R.; Tohge, T.; Fernie, A. R.; Stitt, M.; Usadel, B.: Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data. Plant Cell Environment 37 (5), pp. 1250 - 1258 (2014)

Ruprecht, C.; Tohge, T.; Fernie, A. R.; Mortimer, C. L.; Kozlo, A.; Fraser, P. D.; Funke, N.; Cesarino, I.; Vanholme, R.; Boerjan, W. et al.; Morreel, K.; Burgert, I.; Gierlinger, N.; Bulone, V.; Schneider, V.; Stockero, A.; Navarro, J. P.; Pudel, F.; Tambuyser, B.; Hygate, J.; Bumstead, J.; Notley, L.; Persson, S.: Transcript and Metabolite Profiling for the Evaluation of Tobacco Tree and Poplar as Feedstock for the Bio-based Industry. Journal of visualized experiments: JoVE (87), e51393 (2014)

Tohge, T.; de Souza, L. P.; Fernie, A. R.: Genome‐enabled plant metabolomics. Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences 966, pp. 7 - 20 (2014)

Tohge, T.; Obata, T.; Fernie, A. R.: Biosynthesis of the Essential Respiratory Cofactor Ubiquinone from Phenylalanine in Plants. Molecular Plant 7 (9), pp. 1403 - 1405 (2014)