Publications of A. R. Fernie

Siqueira, J. A., Martins, A. O., Wakin, T., Silva, M. F., Batista-Silva, W., Brito, F. A. L., Zsögön, A., Fernie, A. R., Nunes-Nesi, A. & Araújo, W. L. The Modulation of Growth and Metabolism in Solanum lycopersicum Contrast With the Leaf-Specific Regulation of Wild Tomato Species. Plant, Cell and Environment 48, 1201–1214 (2025).

Urrea-Castellanos, R., Calderan-Rodrigues, M. J., Artins, A., Musialak-Lange, M., Macharanda-Ganesh, A., Fernie, A. R., Wahl, V. & Caldana, C. The Regulatory-associated protein of target of rapamycin 1B (RAPTOR 1B) interconnects with the photoperiod pathway to promote flowering in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America 122, (2025).

Vicente, R., Fernie, A. R. & Uberegui, E. High-throughput screening of wheat leaf dark respiration identifies significant genetic control. Journal of Experimental Botany 76, 904–908 (2025).

Yin, H., Liu, W., Hu, X., Jia, J., Liu, M., Wei, J., Cheng, Y., Gong, X., Li, Q., Yan, W., Jia, J., Gao, L., Fernie, A. R. & Chen, W. A wheat phytohormone atlas spanning major tissues across the entire life cycle provides novel insights into cytokinin and jasmonic acid interplay. Molecular Plant 18, 366–382 (2025).

Yoshida, T. & Fernie, A. R. The protein phosphatases of abscisic acid coreceptors mediate carbon metabolism in Arabidopsis. Theoretical and Experimental Plant Physiology 37, (2025).

Zhang, J., Alseekh, S., Fernie, A. R., Qian, D. & Huang, L. Chemical Characterization of Lipids Provides New Insights into Goji Berry Metabolism. ACS Food Science & Technology 5, 761–769 (2025).

Alseekh, S., Klemmer, A., Yan, J., Guo, T. & Fernie, A. R. Embracing plant plasticity or robustness as a means of ensuring food security. Nature Communications 16, (2025).

Casatejada-Anchel, R., Torres-Moncho, A., Anoman, A. D., Budhagatapalli, N., Pérez-Lorences, E., Alcántara-Enguídanos, A., Rosa-Téllez, S., de Souza, L. P., Kumlehn, J., Fernie, A. R., Muñoz-Bertomeu, J. & Ros, R. Metabolic engineering of the serine/glycine network as a means to improve the nitrogen content of crops. Plant Biotechnology Journal 23, 268–280 (2025).

Kappel, S., Frieboes, M. J., Yokoyama, R., Kappel, C., Tóth, S. Z., Fernie, A. R., Jahns, P., Smirnoff, N., Aarabi, F. & Armbruster, U. Developmental and environmental effects on VTC2-dependent leaf ascorbate accumulation and functions. Journal of Experimental Botany (2025). doi:10.1093/jxb/eraf035

Liu, M.-Y., Jiao, Z., Lou, H., Tang, D., Tian, X., Zhou, B.-W., Ruan, J., Fernie, A. R. & Zhang, Q. A glutamine synthetase-DOF transcription factor module regulates N remobilization from source to sink tissues in tea plants. Plant Physiology 197, (2025).

López, C. M., Alseekh, S., Rivas, F. J. M., Fernie, A. R., Prieto, P. & Alamillo, J. M. CRISPR/Cas9 editing of two adenine phosphoribosyl transferase coding genes reveals the functional specialization of adenine salvage proteins in common bean. Journal of Experimental Botany 76, 346–362 (2025).

López-Tubau, J. M., Laibach, N., Burciaga-Monge, A., Alseekh, S., Deng, C. Y., Fernie, A. R., Altabella, T. & Ferrer, A. Differential impact of impaired steryl ester biosynthesis on the metabolome of tomato fruits and seeds. Physiologia Plantarum 177, (2025).

Nascimento, C. P., da Fonseca-Pereira, P., Ferreira-Silva, M., Rosado-Souza, L., Linka, N., Fernie, A. R., Araújo, W. L. & Nunes-Nesi, A. Functional analysis of the extraplastidial TRX system in germination and early stages of development of Arabidopsis thaliana. Plant Science 350, (2025).

Tiozon, R. J. N., Pasion-Uy, E., Alseekh, S., Sartagoda, K. J. D., Gempesaw, S., Tolentino, J. H. G., Fernie, A. R. & Sreenivasulu, N. Lipidomics-based association study reveals genomic signatures of anti-cancer qualities of pigmented rice sprouts. Frontiers in Plant Science 16, (2025).

Wu, S., Zhang, S., Liu, C.-M., Fernie, A. R. & Yan, S. Recent Advances in Mass Spectrometry-based Protein Interactome Studies. Molecular & Cellular Proteomics 24, (2025).

Yu, Y., Li, W., Liu, Y., Liu, Y., Zhang, Q., Ouyang, Y., Ding, W., Xue, Y., Zou, Y., Yan, J., Jia, A., Yan, J., Hao, X., Gou, Y., Zhai, Z., Liu, L., Zheng, Y., Zhang, B., Xu, J., Yang, N., Xiao, Y., Zhuo, L., Lai, Z., Yin, P., Liu, H.-J., Fernie, A. R., Jackson, D. & Yan, J. A Zea genus-specific micropeptide controls kernel dehydration in maize. Cell 188, 44–59 (2025).

D'Auria, J. C. & Fernie, A. R. The BAHD and the bold: the mitochondria's role in alkaloid artistry. Trends in Plant Science 29, 1290–1291 (2024).

Domer, A., Jasinska, W., Rosental, L., Shochat, E., Alseekh, S., Fernie, A. R., Brotman, Y. & Ovadia, O. Comparative analysis of the plasma metabolome of migrating passerines: novel insights into stopover metabolism. Journal of Avian Biology 2025, (2024).

Fontanet-Manzaneque, J. B., Laibach, N., Herrero-García, I., Coleto-Alcudia, V., Blasco-Escámez, D., Zhang, C., Orduña, L., Alseekh, S., Miller, S., Bjarnholt, N., Fernie, A. R., Matus, J. T. & Caño-Delgado, A. I. Untargeted mutagenesis of brassinosteroid receptor SbBRI1 confers drought tolerance by altering phenylpropanoid metabolism in Sorghum bicolor. Plant Biotechnology Journal 22, 3406–3423 (2024).

He, J., Hao, Y., He, Y., Li, W., Shi, Y., Khurshid, M., Lai, D., Ma, C., Wang, X., Li, J., Cheng, J., Fernie, A. R., Ruan, J., Zhang, K. & Zhou, M. Genome-wide associated study identifies FtPMEI13 gene conferring drought resistance in Tartary buckwheat. The Plant Journal 120, 2398–2419 (2024).