Publications of A. R. Fernie

de Souza, L. P., Alseekh, S., Brotman, Y. & Fernie, A. R. Network based strategies in metabolomics data analysis and interpretation: from molecular networking to biological interpretation. Expert Review of Proteomics 17, 243–255 (2020).

Fernández-Marín, B., Gulías, J., Figueroa, C. M., Iñiguez, C., Clemente-Moreno, M. J., Nunes-Nesi, A., Fernie, A. R., Cavieres, L. A., Bravo, L. A., García-Plazaola, J. I. & Gago, J. How do vascular plants perform photosynthesis in extreme environments? An integrative ecophysiological and biochemical story. The Plant Journal 101, 979–1000 (2020).

Fernie, A. R., Bachem, C. W. B., Helariutta, Y., Neuhaus, H. E., Prat, S., Ruan, Y.-L., Stitt, M., Sweetlove, L. J., Tegeder, M., Wahl, V., Sonnewald, S. & Sonnewald, U. Synchronization of developmental, molecular and metabolic aspects of source–sink interactions. Nature Plants 6, 55–66 (2020).

Gupta, K. J., Mur, L. A. J., Wany, A., Kumari, A., Fernie, A. R. & Ratcliffe, R. G. The role of nitrite and nitric oxide under low oxygen conditions in plants. New Phytologist 225, 1143–1151 (2020).

Liu, J., Fernie, A. R. & Yan, J. The past, present and future of maize improvement – domestication, genomics and functional genomic routes towards crop enhancement. Plant Communications 1, (2020).

Luo, C., Fernie, A. R. & Yan, J. Single-Cell Genomics and Epigenomics: Technologies and Applications in Plants. Trends in Plant Science 25, 1030–1040 (2020).

Nunes-Nesi, A., Cavalcanti, J. H. F. & Fernie, A. R. Characterization of In Vivo Function(s) of Members of the Plant Mitochondrial Carrier Family. Biomolecules 10, (2020).

Rosado-Souza, L., Fernie, A. R. & Aarabi, F. Ascorbate and Thiamin: Metabolic Modulators in Plant Acclimation Responses. Plants 9, (2020).

Salem, M. A., de Souza, L. P., Serag, A., Fernie, A. R., Farag, M. A., Ezzat, S. M. & Alseekh, S. Metabolomics in the Context of Plant Natural Products Research: From Sample Preparation to Metabolite Analysis. Metabolites 10, (2020).

Tohge, T. & Fernie, A. R. Co-Regulation of Clustered and Neo-Functionalized Genes in Plant-Specialized Metabolism. Plants 9, (2020).

Toleco, M. R., Naake, T., Zhang, Y. J., Heazlewood, J. L. & Fernie, A. R. Plant Mitochondrial Carriers: Molecular Gatekeepers That Help to Regulate Plant Central Carbon Metabolism. Plants 9, (2020).

Gago, J., Carriquí, M., Nadal, M., Clemente-Moreno, M. J., Coopman, R. E., Fernie, A. R. & Flexas, J. Photosynthesis Optimized across Land Plant Phylogeny. Trends in Plant Science 24, 947–958 (2019).

Gupta, K. J., Kumari, A., Florez-Sarasa, I. D., Fernie, A. R. & Igamberdiev, A. U. Interaction of nitric oxide with the components of the plant mitochondrial electron transport chain. Journal of Experimental Botany 69, 3413–3424 (2018).

Heyneke, E. & Fernie, A. R. Metabolic regulation of photosynthesis. Biochemical Society Transactions 46, 321–328 (2018).

Scossa, F., Benina, M., Alseekh, S., Zhang, Y. J. & Fernie, A. R. The Integration of Metabolomics and Next-Generation Sequencing Data to Elucidate the Pathways of Natural Product Metabolism in Medicinal Plants. Planta Media 84, 855–873 (2018).

Borghi, M., Fernie, A. R., Schiestl, F. P. & Bouwmeester, H. J. The Sexual Advantage of Looking, Smelling, and Tasting Good: The Metabolic Network that Produces Signals for Pollinators. Trends in Plant Science (2017). doi:10.1016/j.tplants.2016.12.009

de Souza, L. P., Naake, T., Tohge, T. & Fernie, A. R. From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics. GigaScience 6, 1–20 (2017).

Geigenberger, P., Thormählen, I., Daloso, D. M. & Fernie, A. R. The Unprecedented Versatility of the Plant‎ Thioredoxin System. Trends in Plant Science 22, 249–262 (2017).

Goldy, C., Svetaz, L. A., Bustamante, C. A., Allegrini, M., Valentini, G. H., Drincovich, M. F., Fernie, A. R. & Lara, M. V. Comparative proteomic and metabolomic studies between Prunus persica genotypes resistant and susceptible to Taphrina deformans suggest a molecular basis of resistance. Plant Physiology and Biochemistry 118, 245–255 (2017).

Timm, S., Florian, A., Fernie, A. R. & Bauwe, H. The regulatory interplay between photorespiration and photosynthesis. Journal of Experimental Botany 67, 2923–2929 (2016).